Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1830.1 897 100.0
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1662.9 823 97.6
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 0.0e+00 1469.5 832 85.6
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 0.0e+00 1433.3 831 82.9
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 0.0e+00 1388.6 830 79.4
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1387.5 836 78.5
CiPaw.05G242900 Carya illinoinensis HOM05D004962 ORTHO05D006249 0.0e+00 1386.3 835 78.8
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 0.0e+00 1384.0 826 79.5
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 0.0e+00 1383.2 826 79.1
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 0.0e+00 1380.9 829 78.3
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 0.0e+00 1375.5 826 79.2
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 0.0e+00 1372.1 833 77.4
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1359.7 776 84.4
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 0.0e+00 1348.6 835 77.6
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 0.0e+00 1348.6 831 77.5
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1346.3 824 77.2
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 0.0e+00 1343.2 828 77.4
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 0.0e+00 1340.5 836 76.4
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 0.0e+00 1340.1 965 68.1
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 0.0e+00 1339.7 828 75.5
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1339.3 832 76.8
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 0.0e+00 1337.8 834 76.1
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 0.0e+00 1337.4 835 75.8
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 0.0e+00 1336.6 821 78.3
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 0.0e+00 1332.0 827 76.1
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1329.7 833 76.6
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 0.0e+00 1329.3 825 76.0
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1326.2 825 76.1
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 0.0e+00 1324.3 829 76.7
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 0.0e+00 1324.3 826 76.2
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 0.0e+00 1324.3 828 76.1
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 0.0e+00 1323.5 827 75.8
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 0.0e+00 1323.1 831 75.7
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1322.4 829 76.6
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1322.0 829 76.6
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1321.2 829 75.9
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 0.0e+00 1320.8 825 76.0
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 0.0e+00 1320.1 831 75.5
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1318.5 829 76.8
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1317.8 836 75.4
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 0.0e+00 1317.8 832 75.6
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1316.6 835 76.0
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 0.0e+00 1315.1 832 75.2
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 0.0e+00 1314.7 828 74.9
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1312.7 829 76.2
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 0.0e+00 1312.4 827 76.4
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 0.0e+00 1311.2 835 74.9
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 0.0e+00 1309.7 835 75.3
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1309.7 835 75.7
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 0.0e+00 1309.7 832 75.6
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1309.3 832 74.8
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 0.0e+00 1305.0 828 75.0
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1304.7 836 74.6
vmacro10604 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 0.0e+00 1304.3 732 84.8
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 0.0e+00 1295.4 836 74.3
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 0.0e+00 1295.0 833 73.9
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1292.3 828 74.5
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 0.0e+00 1291.6 834 74.1
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 0.0e+00 1285.8 821 73.7
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1284.6 836 73.2
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 0.0e+00 1284.6 835 74.1
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1282.3 836 73.4
AUR62002806 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1279.6 832 73.7
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 0.0e+00 1278.5 834 73.3
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 0.0e+00 1275.8 829 73.1
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 0.0e+00 1275.4 835 73.4
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 0.0e+00 1272.7 829 73.2
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 0.0e+00 1270.4 831 73.4
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 0.0e+00 1264.2 871 70.1
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1262.3 851 70.6
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 0.0e+00 1260.0 848 72.5
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 0.0e+00 1259.2 829 73.6
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1251.9 835 72.7
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 0.0e+00 1243.8 928 66.7
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 0.0e+00 1239.2 855 71.0
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 0.0e+00 1228.0 823 72.1
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 0.0e+00 1195.6 830 68.7
TPR.G18855 Trifolium pratense HOM05D004962 ORTHO05D006249 0.0e+00 1185.2 761 74.1
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 0.0e+00 1183.3 831 68.2
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 0.0e+00 1181.4 830 68.0
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 0.0e+00 1181.0 828 68.0
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 0.0e+00 1179.9 825 67.9
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 0.0e+00 1178.3 829 67.9
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 0.0e+00 1176.4 830 68.0
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 0.0e+00 1176.0 827 68.0
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1172.1 828 67.8
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 0.0e+00 1170.2 827 67.7
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1169.8 828 67.5
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 0.0e+00 1169.5 832 66.9
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1166.0 827 67.6
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 0.0e+00 1163.3 831 67.7
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 0.0e+00 1154.8 831 67.0
ATR0759G035 Amborella trichopoda HOM05D004962 ORTHO05D006249 0.0e+00 1146.7 829 66.5
Zm00001eb033820 Zea mays HOM05D004962 ORTHO05D006249 0.0e+00 1146.0 828 66.1
Os08g0493900 Oryza sativa ssp. japonica HOM05D004962 ORTHO05D006249 0.0e+00 1140.2 831 64.6
CDE06G0233 Ceratophyllum demersum HOM05D004962 ORTHO05D006249 0.0e+00 1114.4 828 64.6
Ah.03g138470 Amaranthus hybridus HOM05D004962 ORTHO05D006249 8.8e-309 1063.5 666 75.4
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 7.4e-300 1033.9 826 61.5
Gohir.A10G178200 Gossypium hirsutum HOM05D004962 ORTHO05D006249 2.5e-287 992.3 639 73.6
TAR371G0254 Trochodendron aralioides HOM05D004962 ORTHO05D006249 9.4e-279 963.8 571 80.2
Cpa.g.sc65.71 Carica papaya HOM05D004962 ORTHO05D006249 2.7e-278 962.2 830 59.3
Mapoly0064s0032 Marchantia polymorpha HOM05D004962 ORTHO05D006249 3.0e-256 889.0 891 51.4
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 6.6e-248 861.3 857 50.6
SMO364G0112 Selaginella moellendorffii HOM05D004962 ORTHO05D006249 8.3e-243 844.3 847 51.9
unitig_699.g19525 Utricularia gibba HOM05D004962 ORTHO05D006249 3.0e-232 809.3 820 52.0
COL.COLO4_32127 Corchorus olitorius HOM05D004962 ORTHO05D006249 1.5e-183 647.5 462 68.2
COL.COLO4_32126 Corchorus olitorius HOM05D004962 ORTHO05D006249 9.4e-178 628.2 402 72.4
HPP92_023439 Vanilla planifolia HOM05D004962 ORTHO05D006249 3.0e-152 543.5 401 67.1
Aa31LG10G4060 Aethionema arabicum HOM05D004962 ORTHO05D006249 3.7e-142 510.0 359 66.6
HPP92_023440 Vanilla planifolia HOM05D004962 ORTHO05D006249 1.1e-138 498.4 365 63.3
Actinidia16688 Actinidia chinensis HOM05D004962 ORTHO05D006249 4.3e-138 496.5 264 86.7
TAR371G0924 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.7e-110 404.8 230 82.2
Sed0004719 Sechium edule HOM05D004962 ORTHO05D006249 7.3e-106 389.4 823 33.9
Cfa023883 Carpinus fangiana HOM05D004962 ORTHO05D006249 6.2e-105 386.3 860 32.6
ClCG04G012840 Citrullus lanatus HOM05D004962 ORTHO05D001482 4.0e-104 383.6 484 46.1
MD07G1142000 Malus domestica HOM05D004962 ORTHO05D006249 5.3e-104 383.3 298 68.5
Cre10.g462750 Chlamydomonas reinhardtii HOM05D004962 ORTHO05D006249 3.7e-97 360.5 1177 26.4
Dinv31590 Davidia involucrata HOM05D004962 ORTHO05D006249 1.1e-96 359.0 202 82.7
SEGI_20231 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.4e-96 358.6 304 57.2
SEGI_12856 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.2e-92 345.5 266 62.4
TAR371G1111 Trochodendron aralioides HOM05D004962 ORTHO05D006249 2.3e-91 341.3 195 79.5
Dinv31591 Davidia involucrata HOM05D004962 ORTHO05D006249 6.7e-91 339.7 239 72.0
MD07G1141900 Malus domestica HOM05D004962 ORTHO05D006249 5.8e-87 326.6 192 78.6
MCO16G399 Micromonas commoda HOM05D004962 ORTHO05D006249 7.6e-87 326.2 785 30.8
BcaC07g37033 Brassica carinata HOM05D004962 ORTHO05D006249 4.2e-69 267.3 561 34.2
C08p04030 Brassica napus HOM05D004962 ORTHO05D006249 8.0e-52 209.9 193 52.8
A08p03840 Brassica napus HOM05D004962 ORTHO05D006249 2.8e-49 201.4 563 29.3
BraA08t32413Z Brassica rapa HOM05D004962 ORTHO05D006249 2.8e-49 201.4 563 29.3
SEGI_09159 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.3e-46 192.6 154 62.3
TAR371G0141 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.1e-40 172.9 102 76.5
vmacro10603 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 1.4e-40 172.6 109 78.0
PGSC0003DMG400024407 Solanum tuberosum HOM05D004962 ORTHO05D006249 7.0e-40 170.2 99 79.8
PGSC0003DMG400031444 Solanum tuberosum HOM05D004962 ORTHO05D006249 7.0e-32 143.7 78 84.6
Dinv31589 Davidia involucrata HOM05D004962 ORTHO05D006249 2.5e-29 135.2 96 68.8
TAR371G0959 Trochodendron aralioides HOM05D004962 ORTHO05D006249 7.3e-29 133.7 70 88.6
CBR_g37253 Chara braunii HOM05D004962 ORTHO05D000048 4.4e-26 124.4 209 38.8
TPR.G18842 Trifolium pratense HOM05D004962 ORTHO05D006249 2.2e-25 122.1 69 79.7
C08p04020 Brassica napus HOM05D004962 ORTHO05D006249 4.6e-23 114.4 69 76.8
Actinidia16687 Actinidia chinensis HOM05D004962 ORTHO05D006249 8.6e-22 110.2 53 84.9
TAR371G1015 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.1e-21 109.8 64 76.6
BcaB02g11086 Brassica carinata HOM05D004962 ORTHO05D006249 9.5e-21 106.7 93 53.8
SEGI_19116 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.2e-20 106.3 65 66.2
A05p20570 Brassica napus HOM05D004962 ORTHO05D040710 4.7e-20 104.4 114 52.6
BolC8t47195H Brassica oleracea HOM05D004962 ORTHO05D006249 4.7e-20 104.4 131 44.3
BraA05t20967Z Brassica rapa HOM05D004962 ORTHO05D040710 3.7e-17 94.7 113 48.7
BolC8t47194H Brassica oleracea HOM05D004962 ORTHO05D006249 7.1e-16 90.5 139 38.8
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 2.1e-15 89.0 59 59.3
RcHm_v2.0_Chr7g0200531 Rosa chinensis HOM05D004962 ORTHO05D006249 1.4e-08 66.2 86 45.3
ECA247G3798 Erigeron canadensis HOM05D000464 ORTHO05D006292 4.6e-07 61.2 146 30.1
SEGI_06199 Sequoiadendron giganteum HOM05D005323 ORTHO05D006820 7.8e-07 60.5 120 30.8
DCAR_026196 Daucus carota HOM05D000464 ORTHO05D006292 1.3e-06 59.7 148 29.7
Rhsim12G0170400 Rhododendron simsii HOM05D000464 ORTHO05D006292 1.3e-06 59.7 176 27.8
SHI17349 Sapria himalayana HOM05D000464 ORTHO05D006292 1.3e-06 59.7 147 27.9
Mapoly0049s0059 Marchantia polymorpha HOM05D005323 ORTHO05D006820 3.9e-06 58.2 120 29.2
SHI06205 Sapria himalayana HOM05D005323 ORTHO05D000023 5.1e-06 57.8 133 27.1
DCAR_007461 Daucus carota HOM05D000464 ORTHO05D006292 6.6e-06 57.4 146 27.4


User provided reference genes

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