Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022432 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 2367.4 1257 100.0
CSS0015479 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 2346.2 1253 98.0
Actinidia36435 Actinidia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1816.2 1263 78.0
vmacro05404 Vaccinium macrocarpon HOM05D000726 ORTHO05D007554 0.0e+00 1785.8 1274 75.0
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 0.0e+00 1567.4 1209 72.4
TAR376G0399 Trochodendron aralioides HOM05D000726 ORTHO05D007554 0.0e+00 1534.2 1259 65.4
Haze_15292 Corylus avellana HOM05D000726 ORTHO05D007554 0.0e+00 1516.9 1272 65.3
QL06p039670 Quercus lobata HOM05D000726 ORTHO05D007554 0.0e+00 1482.2 1269 65.2
Cfa004123 Carpinus fangiana HOM05D000726 ORTHO05D007554 0.0e+00 1481.1 1273 63.8
Dinv26921 Davidia involucrata HOM05D000726 ORTHO05D007554 0.0e+00 1465.3 1015 76.7
Nitab4.5_0001417g0030 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1431.4 1262 60.9
Manes.13G112300 Manihot esculenta HOM05D000726 ORTHO05D007554 0.0e+00 1429.5 1263 61.4
MD02G1184600 Malus domestica HOM05D000726 ORTHO05D007554 0.0e+00 1408.3 1268 60.1
Atru.chr3.177 Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1406.3 1258 60.9
Ciclev10024730m.g Citrus clementina HOM05D000726 ORTHO05D007554 0.0e+00 1399.0 1262 60.1
Nitab4.5_0006813g0010 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1395.9 1280 59.5
Duzib147G0272 Durio zibethinus HOM05D000726 ORTHO05D007554 0.0e+00 1395.2 1259 61.2
RcHm_v2.0_Chr2g0138631 Rosa chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1394.0 1271 59.9
PGSC0003DMG400009094 Solanum tuberosum HOM05D000726 ORTHO05D007554 0.0e+00 1388.2 1260 59.6
Sopen03g007820 Solanum pennellii HOM05D000726 ORTHO05D007554 0.0e+00 1386.3 1260 59.6
Nn4g25316 Nelumbo nucifera HOM05D000726 ORTHO05D007554 0.0e+00 1384.8 1270 59.8
Potri.007G055400 Populus trichocarpa HOM05D000726 ORTHO05D007554 0.0e+00 1383.6 1257 61.2
FAN05G3645 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1382.5 1252 60.1
TWI09G1290 Tripterygium wilfordii HOM05D000726 ORTHO05D007554 0.0e+00 1381.7 1268 59.8
Solyc03g044020.4 Solanum lycopersicum HOM05D000726 ORTHO05D007554 0.0e+00 1379.4 1261 59.4
FvH4_6g31560 Fragaria vesca HOM05D000726 ORTHO05D007554 0.0e+00 1377.1 1252 60.1
Gorai.007G222900 Gossypium raimondii HOM05D000726 ORTHO05D007554 0.0e+00 1374.0 1253 58.3
Gohir.D11G207900 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1369.4 1253 58.2
FAN14G0573 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1368.6 1252 59.5
Gohir.A11G215400 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1364.4 1253 58.0
CANSAT01G3261 Cannabis sativa HOM05D000726 ORTHO05D007554 0.0e+00 1358.6 1274 58.3
CAN.G278.12 Capsicum annuum HOM05D000726 ORTHO05D007554 0.0e+00 1357.0 1259 59.0
MSTRG.23676 Avicennia marina HOM05D000726 ORTHO05D007554 0.0e+00 1354.3 1264 59.2
Lj7A95G20 Lonicera japonica HOM05D000726 ORTHO05D007554 0.0e+00 1337.8 1265 61.6
Peaxi162Scf00118g01929 Petunia axillaris HOM05D000726 ORTHO05D007554 0.0e+00 1330.5 1272 58.2
Migut.H00354 Erythranthe guttata HOM05D000726 ORTHO05D007554 0.0e+00 1329.7 1261 57.6
Aqoxy6G02647 Aquilegia oxysepala HOM05D000726 ORTHO05D007554 0.0e+00 1322.4 1267 57.1
Sc03g0002340 Simmondsia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1317.4 1248 57.6
COL.COLO4_11566 Corchorus olitorius HOM05D000726 ORTHO05D007554 0.0e+00 1311.2 1260 57.2
FAN02G1686 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1308.9 1198 60.4
Cc07_g07020 Coffea canephora HOM05D000726 ORTHO05D007554 0.0e+00 1308.1 1234 58.7
HanXRQChr12g0373111 Helianthus annuus HOM05D000726 ORTHO05D007554 0.0e+00 1305.4 1274 55.7
Sed0012994 Sechium edule HOM05D000726 ORTHO05D007554 0.0e+00 1303.5 1275 56.9
ClCG01G017520 Citrullus lanatus HOM05D000726 ORTHO05D007554 0.0e+00 1298.5 1282 57.3
MELO3C007629.2 Cucumis melo HOM05D000726 ORTHO05D007554 0.0e+00 1298.1 1283 56.7
CsaV3_6G044070 Cucumis sativus L. HOM05D000726 ORTHO05D007554 0.0e+00 1295.0 1270 57.2
Hund16395 Selenicereus undatus HOM05D000726 ORTHO05D007554 0.0e+00 1292.3 1251 57.6
Phvul.002G011500 Phaseolus vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 1291.2 1263 55.5
Glyma.01G193500 Glycine max HOM05D000726 ORTHO05D007554 0.0e+00 1285.8 1262 55.3
PGR102G1358 Punica granatum HOM05D000726 ORTHO05D007554 0.0e+00 1284.2 1267 55.4
Ca_24700_v3 Cicer arietinum L. HOM05D000726 ORTHO05D007554 0.0e+00 1276.9 1259 56.3
arahy.Tifrunner.gnm1.ann1.1ZHU8Z Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1275.4 1272 55.3
Atru.BG.105.p Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1271.1 1107 61.8
SGA_v2.0_scaffold15G07449 Striga asiatica HOM05D000726 ORTHO05D007554 0.0e+00 1271.1 1310 54.5
Lalb_Chr09g0323571 Lupinus albus HOM05D000726 ORTHO05D007554 0.0e+00 1268.4 1267 56.4
Medtr5g015600 Medicago truncatula HOM05D000726 ORTHO05D007554 0.0e+00 1268.4 1274 54.6
PSO675G6338 Papaver somniferum HOM05D000726 ORTHO05D007554 0.0e+00 1263.8 1284 55.3
VMungo1215G2083 Vigna mungo HOM05D000726 ORTHO05D007554 0.0e+00 1260.4 1263 54.1
Lsat_1_v5_gn_4_160781 Lactuca sativa HOM05D000726 ORTHO05D007554 0.0e+00 1258.4 1268 54.9
PSO541G0636 Papaver somniferum HOM05D000726 ORTHO05D007554 0.0e+00 1257.7 1271 55.6
EL10Ac6g15628 Beta vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 1251.9 1248 55.7
Lj2g0006912 Lotus japonicus HOM05D000726 ORTHO05D007554 0.0e+00 1251.9 1261 55.1
Eucgr.H02305 Eucalyptus grandis HOM05D000726 ORTHO05D007554 0.0e+00 1250.0 1256 55.6
TPR.G34847 Trifolium pratense HOM05D000726 ORTHO05D007554 0.0e+00 1241.5 1261 53.8
THA.LOC104819266 Tarenaya hassleriana HOM05D000726 ORTHO05D007554 0.0e+00 1239.2 1261 54.4
ECA232G2303 Erigeron canadensis HOM05D000726 ORTHO05D007554 0.0e+00 1234.2 1277 53.5
arahy.Tifrunner.gnm1.ann1.6361M0 Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1233.0 1255 54.7
DCAR_010826 Daucus carota HOM05D000726 ORTHO05D007554 0.0e+00 1223.0 1247 55.1
CARHR056360 Cardamine hirsuta HOM05D000726 ORTHO05D007554 0.0e+00 1203.0 1260 52.6
Ah.03g140460 Amaranthus hybridus HOM05D000726 ORTHO05D007554 0.0e+00 1199.1 1245 54.4
AL2G19510 Arabidopsis lyrata HOM05D000726 ORTHO05D007554 0.0e+00 1195.6 1266 52.1
Sabra07G0047700 Salix brachista HOM05D000726 ORTHO05D007554 0.0e+00 1187.9 1181 56.9
AUR62003999 Chenopodium quinoa HOM05D000726 ORTHO05D007554 0.0e+00 1187.6 1255 54.0
FAN09G4729 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1184.9 1200 56.8
Aa31LG2G2150 Aethionema arabicum HOM05D000726 ORTHO05D007554 0.0e+00 1178.7 1266 51.9
Sp5g19220 Schrenkiella parvula HOM05D000726 ORTHO05D007554 0.0e+00 1171.4 1261 51.0
Thhalv10023223m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1163.7 1261 51.1
AT1G64960 Arabidopsis thaliana HOM05D000726 ORTHO05D007554 0.0e+00 1162.5 1264 51.1
Thhalv10000018m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1147.5 1262 50.1
Psat2g171280 Pisum sativum HOM05D000726 ORTHO05D007554 0.0e+00 1137.5 1284 50.2
Thecc.01G071800 Theobroma cacao HOM05D000726 ORTHO05D007554 0.0e+00 1130.9 944 63.7
Prupe.6G221900 Prunus persica HOM05D000726 ORTHO05D007554 0.0e+00 1125.2 945 63.3
SHI31766 Sapria himalayana HOM05D000726 ORTHO05D007554 0.0e+00 1098.6 1260 50.3
C06p38860 Brassica napus HOM05D000726 ORTHO05D007554 0.0e+00 1098.2 1272 49.5
BolC6t38979H Brassica oleracea HOM05D000726 ORTHO05D007554 0.0e+00 1097.4 1272 49.4
BcaB03g15339 Brassica carinata HOM05D000726 ORTHO05D007554 0.0e+00 1091.6 1270 49.2
BraA07t30892Z Brassica rapa HOM05D000726 ORTHO05D007554 1.0e-310 1070.5 1273 50.2
Cpa.g.sc6.26 Carica papaya HOM05D000726 ORTHO05D007554 1.2e-303 1047.0 872 64.1
Carub.0002s1010 Capsella rubella HOM05D000726 ORTHO05D007554 4.8e-297 1025.0 1056 52.5
Thhalv10006613m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 9.4e-293 1010.7 1189 48.8
Thhalv10001287m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 9.8e-290 1000.7 1263 46.3
AUR62040247 Chenopodium quinoa HOM05D000726 ORTHO05D007554 1.8e-280 969.9 992 54.8
GSVIVG01000124001 Vitis vinifera HOM05D000726 ORTHO05D007554 1.1e-261 907.5 1049 51.9
A07p32680 Brassica napus HOM05D000726 ORTHO05D007554 1.5e-253 880.6 857 58.1
SalBow3G2688 Salvia bowleyana HOM05D000726 ORTHO05D007554 2.5e-245 853.2 911 52.9
CDE04G3158 Ceratophyllum demersum HOM05D000726 ORTHO05D007554 2.2e-241 840.1 1233 43.1
unitig_0.g505 Utricularia gibba HOM05D000726 ORTHO05D007554 3.9e-238 829.3 1296 41.0
ATR0208G028 Amborella trichopoda HOM05D000726 ORTHO05D007554 4.8e-236 822.4 876 52.2
Zm00001eb051460 Zea mays HOM05D000726 ORTHO05D007554 4.0e-235 819.3 1129 43.0
Os03g0616500 Oryza sativa ssp. japonica HOM05D000726 ORTHO05D007554 2.1e-183 647.5 802 44.5
SEGI_06920 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 7.5e-173 612.5 886 40.7
HPP92_014039 Vanilla planifolia HOM05D000726 ORTHO05D007554 7.5e-173 612.5 569 56.9
Mapoly0045s0033 Marchantia polymorpha HOM05D000726 ORTHO05D007554 1.5e-168 598.2 1122 35.3
SMO364G0657 Selaginella moellendorffii HOM05D000726 ORTHO05D007554 1.9e-168 597.8 799 43.6
AagrBONN_evm.TU.Sc2ySwM_117.495 Anthoceros agrestis HOM05D000726 ORTHO05D007554 8.0e-159 565.8 734 43.6
HPP92_028352 Vanilla planifolia HOM05D000726 ORTHO05D007554 8.6e-153 545.8 637 46.9
CiPaw.01G005400 Carya illinoinensis HOM05D000726 ORTHO05D007554 1.5e-141 508.4 431 64.7
Oeu003558.1 Olea europaea HOM05D000726 ORTHO05D007554 1.2e-122 445.7 361 67.0
SEGI_38739 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 6.6e-121 439.9 643 41.5
CiPaw.01G005300 Carya illinoinensis HOM05D000726 ORTHO05D007554 4.8e-119 433.7 460 55.0
HPP92_014040 Vanilla planifolia HOM05D000726 ORTHO05D007554 2.4e-102 378.3 663 36.5
Sabra16G0084600 Salix brachista HOM05D000726 ORTHO05D007554 1.2e-101 375.9 351 60.4
Sabra11G0026400 Salix brachista HOM05D000726 ORTHO05D007554 1.3e-100 372.5 344 61.6
Sabra11G0056500 Salix brachista HOM05D000726 ORTHO05D007554 4.2e-99 367.5 340 61.2
Glyma.11G048432 Glycine max HOM05D000726 ORTHO05D007554 7.1e-99 366.7 236 78.0
PRCOL_00006071 Prasinoderma coloniale HOM05D000726 ORTHO05D007554 4.4e-80 304.3 455 36.5
Glyma.11G048366 Glycine max HOM05D000726 ORTHO05D007554 1.2e-77 296.2 397 45.3
Cpa.g.sc6.25 Carica papaya HOM05D000726 ORTHO05D007554 1.7e-76 292.4 384 45.3
Cre06.g262800 Chlamydomonas reinhardtii HOM05D000726 ORTHO05D007554 2.5e-67 261.9 453 35.1
CBR_g29418 Chara braunii HOM05D000019 ORTHO05D000002 6.8e-65 253.8 346 38.7
RcHm_v2.0_Chr2g0138441 Rosa chinensis HOM05D000726 ORTHO05D007554 6.3e-63 247.3 381 43.0
Nn1g04578 Nelumbo nucifera HOM05D000726 ORTHO05D007554 9.4e-59 233.4 305 43.3
SEGI_24863 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 2.7e-45 188.7 294 37.1
Glyma.08G243550 Glycine max HOM05D000726 ORTHO05D025659 1.1e-38 166.8 174 50.0
ATR0208G027 Amborella trichopoda HOM05D000726 ORTHO05D007554 7.5e-32 144.1 326 37.4
SEGI_23696 Sequoiadendron giganteum HOM05D000726 ORTHO05D000001 4.7e-26 124.8 444 27.5
Nn1g04577 Nelumbo nucifera HOM05D000726 ORTHO05D007554 6.2e-26 124.4 134 53.7
Lj7C94G0 Lonicera japonica HOM05D000726 ORTHO05D007554 2.3e-25 122.5 203 40.9
Psat0s3193g0080 Pisum sativum HOM05D000726 ORTHO05D025659 2.5e-19 102.4 117 42.7
Psat3g174680 Pisum sativum HOM05D000726 ORTHO05D025659 2.5e-19 102.4 117 44.4
Psat3g172760 Pisum sativum HOM05D000726 ORTHO05D025659 7.3e-19 100.9 118 42.4
Psat3g174600 Pisum sativum HOM05D000726 ORTHO05D025659 7.3e-19 100.9 143 37.1
Lsat_1_v5_gn_2_113660 Lactuca sativa HOM05D000726 ORTHO05D007554 1.3e-12 80.1 61 63.9
Zm00001eb060820 Zea mays HOM05D000726 ORTHO05D007554 1.8e-09 69.7 147 31.3


User provided reference genes

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