Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022405 Camellia sinensis var. sinensis HOM05D003549 ORTHO05D004223 4.4e-25 117.5 74 100.0
Actinidia19094 Actinidia chinensis HOM05D003549 ORTHO05D004223 8.4e-24 113.2 74 93.2
Haze_07495 Corylus avellana HOM05D003549 ORTHO05D004223 7.1e-23 110.2 74 89.2
CiPaw.11G028500 Carya illinoinensis HOM05D003549 ORTHO05D004223 1.6e-22 109.0 72 86.1
Glyma.04G181200 Glycine max HOM05D003549 ORTHO05D004223 1.6e-22 109.0 74 87.8
Phvul.001G059000 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 3.5e-22 107.8 74 83.8
Glyma.06G183700 Glycine max HOM05D003549 ORTHO05D004223 1.3e-21 105.9 74 85.1
Phvul.009G179900 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 1.7e-21 105.5 74 83.8
CiPaw.12G025200 Carya illinoinensis HOM05D003549 ORTHO05D004223 3.0e-21 104.8 72 76.4
Lj6g0023924 Lotus japonicus HOM05D003549 ORTHO05D004223 3.0e-21 104.8 74 81.1
Actinidia33056 Actinidia chinensis HOM05D000215 ORTHO05D003454 3.9e-21 104.4 74 85.1
Glyma.14G134200 Glycine max HOM05D003549 ORTHO05D004223 3.9e-21 104.4 74 82.4
Hma1.2p1_0176F.1_g077660 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 5.1e-21 104.0 74 85.1
arahy.Tifrunner.gnm1.ann1.G4GSC6 Arachis hypogaea HOM05D003549 ORTHO05D004223 8.7e-21 103.2 74 87.8
arahy.Tifrunner.gnm1.ann1.TT1NYY Arachis hypogaea HOM05D003549 ORTHO05D004223 8.7e-21 103.2 74 87.8
Ciclev10023184m.g Citrus clementina HOM05D003549 ORTHO05D004223 1.1e-20 102.8 74 85.1
Cc04_g12860 Coffea canephora HOM05D003549 ORTHO05D004223 1.1e-20 102.8 76 81.6
Lj1g0007079 Lotus japonicus HOM05D003549 ORTHO05D004223 1.1e-20 102.8 74 81.1
RcHm_v2.0_Chr7g0193821 Rosa chinensis HOM05D003549 ORTHO05D004223 1.1e-20 102.8 71 84.5
CsaV3_1G008390 Cucumis sativus L. HOM05D003549 ORTHO05D004223 1.5e-20 102.4 74 85.1
FAN04G1549 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.5e-20 101.7 71 84.5
FAN08G2999 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.5e-20 101.7 71 84.5
FAN13G2761 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.5e-20 101.7 71 84.5
Ca_16195_v3 Cicer arietinum L. HOM05D003549 ORTHO05D004223 3.3e-20 101.3 74 78.4
Lalb_Chr08g0236401 Lupinus albus HOM05D003549 ORTHO05D004223 3.3e-20 101.3 74 81.1
Potri.017G066900 Populus trichocarpa HOM05D003549 ORTHO05D004223 3.3e-20 101.3 74 85.1
ClCG01G013030 Citrullus lanatus HOM05D003549 ORTHO05D004223 4.3e-20 100.9 74 83.8
RcHm_v2.0_Chr7g0184521 Rosa chinensis HOM05D003549 ORTHO05D004223 4.3e-20 100.9 71 83.1
Actinidia04982 Actinidia chinensis HOM05D000215 ORTHO05D003454 5.6e-20 100.5 74 85.1
Glyma.17G198800 Glycine max HOM05D003549 ORTHO05D004223 5.6e-20 100.5 70 81.4
MD14G1183200 Malus domestica HOM05D003549 ORTHO05D004223 5.6e-20 100.5 73 83.6
Oeu000929.1 Olea europaea HOM05D003549 ORTHO05D004223 5.6e-20 100.5 74 87.8
TAR629G2438 Trochodendron aralioides HOM05D003549 ORTHO05D004223 5.6e-20 100.5 74 74.3
FvH4_5g05150 Fragaria vesca HOM05D003549 ORTHO05D004223 7.3e-20 100.1 71 84.5
FAN18G4010 Fragaria x ananassa HOM05D003549 ORTHO05D004223 7.3e-20 100.1 71 84.5
MD06G1177000 Malus domestica HOM05D003549 ORTHO05D004223 7.3e-20 100.1 73 80.8
Rhsim12G0163400 Rhododendron simsii HOM05D003549 ORTHO05D004223 7.3e-20 100.1 72 73.6
TAR622G0024 Trochodendron aralioides HOM05D003549 ORTHO05D004223 9.6e-20 99.8 74 83.8
TAR622G1417 Trochodendron aralioides HOM05D003549 ORTHO05D004223 9.6e-20 99.8 74 83.8
Psat5g114160 Pisum sativum HOM05D003549 ORTHO05D004223 1.3e-19 99.4 74 81.1
Prupe.5G175700 Prunus persica HOM05D003549 ORTHO05D004223 1.6e-19 99.0 73 83.6
Gohir.A07G060300 Gossypium hirsutum HOM05D003549 ORTHO05D004223 2.1e-19 98.6 74 86.5
HanXRQChr16g0517241 Helianthus annuus HOM05D003549 ORTHO05D004223 2.8e-19 98.2 76 81.6
Peaxi162Scf00017g02716 Petunia axillaris HOM05D003549 ORTHO05D004223 3.6e-19 97.8 75 77.3
Potri.001G334600 Populus trichocarpa HOM05D003549 ORTHO05D004223 3.6e-19 97.8 74 82.4
Nitab4.5_0000852g0140 Nicotiana tabacum HOM05D003549 ORTHO05D004223 4.8e-19 97.4 75 77.3
Nitab4.5_0003857g0060 Nicotiana tabacum HOM05D003549 ORTHO05D004223 4.8e-19 97.4 75 77.3
Medtr3g078130 Medicago truncatula HOM05D003549 ORTHO05D004223 6.2e-19 97.1 74 81.1
TAR371G0468 Trochodendron aralioides HOM05D003549 ORTHO05D004223 6.2e-19 97.1 74 86.5
Dinv09155 Davidia involucrata HOM05D003549 ORTHO05D004223 8.1e-19 96.7 74 78.4
Migut.D01775 Erythranthe guttata HOM05D003549 ORTHO05D004223 8.1e-19 96.7 75 84.0
THA.LOC104805767 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 8.1e-19 96.7 71 84.5
Nn8g39923 Nelumbo nucifera HOM05D003549 ORTHO05D004223 1.1e-18 96.3 74 71.6
PSO017G2368 Papaver somniferum HOM05D003549 ORTHO05D004223 1.1e-18 96.3 74 71.6
Thecc.03G009800 Theobroma cacao HOM05D003549 ORTHO05D004223 1.1e-18 96.3 75 82.7
MBI15_g31119_MAGBIO Magnolia biondii HOM05D003549 ORTHO05D004223 1.4e-18 95.9 73 83.6
ClCG08G009420 Citrullus lanatus HOM05D003549 ORTHO05D004223 3.1e-18 94.7 74 82.4
MELO3C026538.2 Cucumis melo HOM05D003549 ORTHO05D004223 3.1e-18 94.7 74 82.4
CsaV3_6G031560 Cucumis sativus L. HOM05D003549 ORTHO05D004223 3.1e-18 94.7 74 82.4
PSO478G4862 Papaver somniferum HOM05D003549 ORTHO05D004223 3.1e-18 94.7 74 70.3
GSVIVG01032498001 Vitis vinifera HOM05D003549 ORTHO05D004223 3.1e-18 94.7 74 74.3
Ciclev10017382m.g Citrus clementina HOM05D003549 ORTHO05D004223 6.9e-18 93.6 74 82.4
Sed0001837 Sechium edule HOM05D003549 ORTHO05D004223 6.9e-18 93.6 74 68.9
TPR.G30392 Trifolium pratense HOM05D003549 ORTHO05D004223 6.9e-18 93.6 82 76.8
TWI81G0050 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 9.0e-18 93.2 74 73.0
TWI81G1057 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 9.0e-18 93.2 74 73.0
Lsat_1_v5_gn_4_74920 Lactuca sativa HOM05D003549 ORTHO05D004223 1.5e-17 92.4 76 73.7
Solyc06g071390.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 1.5e-17 92.4 75 81.3
Sopen06g027670 Solanum pennellii HOM05D003549 ORTHO05D004223 1.5e-17 92.4 75 81.3
THA.LOC104823782 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 1.5e-17 92.4 75 81.3
Nn2g12408 Nelumbo nucifera HOM05D003549 ORTHO05D004223 2.0e-17 92.0 72 81.9
CAN.G628.73 Capsicum annuum HOM05D003549 ORTHO05D004223 2.6e-17 91.7 75 80.0
Duzib205G0517 Durio zibethinus HOM05D003549 ORTHO05D004223 2.6e-17 91.7 75 73.3
Manes.14G067300 Manihot esculenta HOM05D003549 ORTHO05D004223 2.6e-17 91.7 76 80.3
Sed0023520 Sechium edule HOM05D003549 ORTHO05D004223 3.4e-17 91.3 74 79.7
THA.LOC109116495 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 3.4e-17 91.3 74 71.6
PGSC0003DMG400027096 Solanum tuberosum HOM05D003549 ORTHO05D004223 4.5e-17 90.9 75 81.3
Peaxi162Scf00689g00329 Petunia axillaris HOM05D003549 ORTHO05D004223 7.6e-17 90.1 75 82.7
TWI15G0885 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 7.6e-17 90.1 74 70.3
PGSC0003DMG400024492 Solanum tuberosum HOM05D003549 ORTHO05D004223 1.3e-16 89.4 75 73.3
Dinv33505 Davidia involucrata HOM05D003549 ORTHO05D004223 1.7e-16 89.0 74 67.6
Aa31LG2G1940 Aethionema arabicum HOM05D003549 ORTHO05D004223 2.2e-16 88.6 74 73.0
Duzib084G0774 Durio zibethinus HOM05D003549 ORTHO05D004223 2.2e-16 88.6 75 73.3
ECA232G0606 Erigeron canadensis HOM05D003549 ORTHO05D004223 2.2e-16 88.6 74 71.6
Peaxi162Scf00535g00046 Petunia axillaris HOM05D003549 ORTHO05D004223 2.9e-16 88.2 75 69.3
QL02p076964 Quercus lobata HOM05D003549 ORTHO05D004223 2.9e-16 88.2 73 68.5
Solyc03g114170.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 3.8e-16 87.8 75 72.0
Aqoxy3G00995 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 4.9e-16 87.4 76 67.1
SGA_v2.0_scaffold90G27958 Striga asiatica HOM05D000215 ORTHO05D003454 4.9e-16 87.4 75 68.0
TWI60G0590 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 4.9e-16 87.4 74 67.6
Hund03159 Selenicereus undatus HOM05D003549 ORTHO05D004223 6.4e-16 87.0 70 78.6
Prupe.3G282400 Prunus persica HOM05D003549 ORTHO05D004223 1.1e-15 86.3 74 74.3
RcHm_v2.0_Chr2g0170951 Rosa chinensis HOM05D003549 ORTHO05D004223 1.9e-15 85.5 72 73.6
PSO832G2372 Papaver somniferum HOM05D003549 ORTHO05D004223 2.4e-15 85.1 73 67.1
Cpa.g.sc124.38 Carica papaya HOM05D003549 ORTHO05D004223 3.2e-15 84.7 75 77.3
PSO063G4497 Papaver somniferum HOM05D003549 ORTHO05D004223 3.2e-15 84.7 73 64.4
Sopen03g033240 Solanum pennellii HOM05D003549 ORTHO05D004223 3.2e-15 84.7 75 69.3
SalBow2G1727 Salvia bowleyana HOM05D003549 ORTHO05D004223 4.2e-15 84.3 75 65.3
Sp5g19250 Schrenkiella parvula HOM05D003549 ORTHO05D004223 5.4e-15 84.0 74 73.0
PGR083G2145 Punica granatum HOM05D003549 ORTHO05D004223 7.1e-15 83.6 74 77.0
FAN02G2804 Fragaria x ananassa HOM05D003549 ORTHO05D004223 9.3e-15 83.2 72 70.8
FAN05G0330 Fragaria x ananassa HOM05D003549 ORTHO05D004223 9.3e-15 83.2 72 70.8
FAN09G2996 Fragaria x ananassa HOM05D003549 ORTHO05D004223 9.3e-15 83.2 72 70.8
FAN09G4496 Fragaria x ananassa HOM05D003549 ORTHO05D004223 9.3e-15 83.2 72 70.8
AL2G18990 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 1.6e-14 82.4 75 77.3
Manes.06G103400 Manihot esculenta HOM05D003549 ORTHO05D004223 1.6e-14 82.4 47 87.2
FvH4_6g50520 Fragaria vesca HOM05D003549 ORTHO05D004223 2.1e-14 82.0 72 70.8
FAN14G1319 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.1e-14 82.0 72 70.8
Sc04g0001880 Simmondsia chinensis HOM05D003549 ORTHO05D004223 2.1e-14 82.0 72 72.2
CARHR049490 Cardamine hirsuta HOM05D003549 ORTHO05D004223 2.7e-14 81.6 74 71.6
DCAR_021678 Daucus carota HOM05D003549 ORTHO05D004223 2.7e-14 81.6 71 76.1
Thhalv10022469m.g Eutrema salsugineum HOM05D003549 ORTHO05D004223 2.7e-14 81.6 74 71.6
ECA246G5096 Erigeron canadensis HOM05D003549 ORTHO05D004223 3.5e-14 81.3 65 81.5
Atru.chr9.2446 Acer truncatum HOM05D003549 ORTHO05D004223 6.0e-14 80.5 47 83.0
AL8G14410 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 6.0e-14 80.5 74 74.3
BcaB03g15337 Brassica carinata HOM05D003549 ORTHO05D004223 6.0e-14 80.5 74 64.9
CANSAT64G1109 Cannabis sativa HOM05D003549 ORTHO05D004223 7.9e-14 80.1 74 71.6
COL.COLO4_34052 Corchorus olitorius HOM05D003549 ORTHO05D004223 7.9e-14 80.1 75 78.7
Cpa.g.sc1914.1 Carica papaya HOM05D003549 ORTHO05D004223 2.3e-13 78.6 46 84.8
CAN.G781.29 Capsicum annuum HOM05D003549 ORTHO05D004223 3.0e-13 78.2 75 72.0
Eucgr.K02857 Eucalyptus grandis HOM05D003549 ORTHO05D004223 5.1e-13 77.4 68 79.4
QL10p012114 Quercus lobata HOM05D003549 ORTHO05D004223 5.1e-13 77.4 128 50.0
HPP92_002194 Vanilla planifolia HOM05D003549 ORTHO05D004223 5.1e-13 77.4 73 71.2
Cfa019097 Carpinus fangiana HOM05D003549 ORTHO05D004223 8.7e-13 76.6 125 52.8
Lalb_Chr11g0071151 Lupinus albus HOM05D003549 ORTHO05D004223 1.1e-12 76.3 74 75.7
Sc12g0005420 Simmondsia chinensis HOM05D003549 ORTHO05D004223 1.1e-12 76.3 72 73.6
Zm00001eb332940 Zea mays HOM05D003549 ORTHO05D004223 1.5e-12 75.9 74 64.9
A07p32720 Brassica napus HOM05D003549 ORTHO05D004223 1.9e-12 75.5 70 67.1
C06p38930 Brassica napus HOM05D003549 ORTHO05D004223 1.9e-12 75.5 70 67.1
BolC6t38985H Brassica oleracea HOM05D003549 ORTHO05D004223 1.9e-12 75.5 70 67.1
BraA07t30898Z Brassica rapa HOM05D003549 ORTHO05D004223 1.9e-12 75.5 70 67.1
ECA247G2394 Erigeron canadensis HOM05D003549 ORTHO05D004223 1.9e-12 75.5 75 69.3
Aqoxy3G00999 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 2.5e-12 75.1 74 71.6
Hma1.2p1_0802F.1_g220520 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 3.3e-12 74.7 70 60.0
Carub.0003s3029 Capsella rubella HOM05D003549 ORTHO05D004223 4.3e-12 74.3 74 73.0
SalBow5G5409 Salvia bowleyana HOM05D003549 ORTHO05D004223 5.6e-12 73.9 74 67.6
CAN.G208.13 Capsicum annuum HOM05D003549 ORTHO05D004223 7.4e-12 73.6 48 79.2
Duzib068G0952 Durio zibethinus HOM05D003549 ORTHO05D004223 7.4e-12 73.6 81 67.9
Rhsim08G0170600 Rhododendron simsii HOM05D003549 ORTHO05D004223 1.3e-11 72.8 72 61.1
TPR.G37556 Trifolium pratense HOM05D003549 ORTHO05D004223 1.3e-11 72.8 74 71.6
unitig_26.g9627 Utricularia gibba HOM05D000915 ORTHO05D001662 1.6e-11 72.4 73 63.0
AT5G45010 Arabidopsis thaliana HOM05D003549 ORTHO05D004223 4.8e-11 70.9 74 67.6
BcaB05g23601 Brassica carinata HOM05D003549 ORTHO05D004223 6.2e-11 70.5 68 58.8
DCAR_021565 Daucus carota HOM05D003549 ORTHO05D004223 1.8e-10 68.9 65 75.4
CAN.G650.26 Capsicum annuum HOM05D003549 ORTHO05D004223 2.4e-10 68.6 48 72.9
Os01g0273000 Oryza sativa ssp. japonica HOM05D003549 ORTHO05D004223 4.0e-10 67.8 72 62.5
A02p23950 Brassica napus HOM05D003549 ORTHO05D004223 6.9e-10 67.0 69 72.5
HanXRQChr02g0037231 Helianthus annuus HOM05D003549 ORTHO05D004223 1.2e-09 66.2 76 65.8
Hma1.2p1_0967F.1_g242260 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 1.5e-09 65.9 82 51.2
Gohir.D07G065000 Gossypium hirsutum HOM05D003549 ORTHO05D004223 2.0e-09 65.5 48 75.0
Gorai.001G068500 Gossypium raimondii HOM05D003549 ORTHO05D004223 2.0e-09 65.5 48 75.0
Lsat_1_v5_gn_1_26640 Lactuca sativa HOM05D000122 ORTHO05D004223 2.6e-09 65.1 74 64.9
EL10Ac5g10777 Beta vulgaris HOM05D003549 ORTHO05D004223 3.4e-09 64.7 68 70.6
AUR62036487 Chenopodium quinoa HOM05D003549 ORTHO05D004223 5.8e-09 63.9 70 71.4
Gohir.D12G274100 Gossypium hirsutum HOM05D003549 ORTHO05D004223 5.8e-09 63.9 72 68.1
Gorai.008G294500 Gossypium raimondii HOM05D003549 ORTHO05D004223 5.8e-09 63.9 72 68.1
C02p37800 Brassica napus HOM05D003549 ORTHO05D004223 7.6e-09 63.5 69 69.6
BolC2t09796H Brassica oleracea HOM05D003549 ORTHO05D004223 7.6e-09 63.5 69 56.5
AT1G64750 Arabidopsis thaliana HOM05D003549 ORTHO05D004223 1.3e-08 62.8 116 50.0
Aqoxy3G02997 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 1.7e-08 62.4 67 65.7
AUR62037088 Chenopodium quinoa HOM05D003549 ORTHO05D004223 1.7e-08 62.4 70 70.0
Mapoly0025s0126 Marchantia polymorpha HOM05D003549 ORTHO05D004223 8.4e-08 60.1 66 53.0
AUR62008230 Chenopodium quinoa HOM05D003549 ORTHO05D004223 1.4e-07 59.3 70 67.1
SMO139G0002 Selaginella moellendorffii HOM05D003549 ORTHO05D004223 1.4e-07 59.3 66 62.1
Sopen12g011080 Solanum pennellii HOM05D003549 ORTHO05D004223 1.4e-07 59.3 45 68.9
HPP92_011135 Vanilla planifolia HOM05D003549 ORTHO05D004223 1.4e-07 59.3 114 43.9
BraA02t07390Z Brassica rapa HOM05D003549 ORTHO05D004223 1.9e-07 58.9 85 57.6
Peaxi162Scf00548g00225 Petunia axillaris HOM05D003549 ORTHO05D004223 3.2e-07 58.2 49 57.1
SMO145G0027 Selaginella moellendorffii HOM05D003549 ORTHO05D004223 4.2e-07 57.8 63 63.5
CDE10G0156 Ceratophyllum demersum HOM05D003549 ORTHO05D004223 5.5e-07 57.4 71 57.7
Ah.13g075720 Amaranthus hybridus HOM05D003549 ORTHO05D004223 7.1e-07 57.0 64 67.2
CSS0021629 Camellia sinensis var. sinensis HOM05D003549 ORTHO05D004223 1.2e-06 56.2 35 82.9
DCAR_016492 Daucus carota HOM05D003549 ORTHO05D004223 1.6e-06 55.8 74 62.2
Medtr4g105790 Medicago truncatula HOM05D003549 ORTHO05D002335 3.5e-06 54.7 48 62.5
Haze_18696 Corylus avellana HOM05D003549 ORTHO05D004223 4.6e-06 54.3 30 86.7
GSVIVG01007782001 Vitis vinifera HOM05D003549 ORTHO05D439742 4.6e-06 54.3 74 64.9
CARHR055420 Cardamine hirsuta HOM05D003549 ORTHO05D004223 6.0e-06 53.9 116 44.0
Lalb_Chr23g0273191 Lupinus albus HOM05D003549 ORTHO05D004223 7.9e-06 53.5 30 90.0
Hund12012 Selenicereus undatus HOM05D003549 ORTHO05D004223 7.9e-06 53.5 68 60.3


User provided reference genes

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