Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022396 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 1.9e-136 489.2 254 100.0
vmacro15292 Vaccinium macrocarpon HOM05D006658 ORTHO05D008515 8.2e-111 404.1 251 82.5
Rhsim02G0017700 Rhododendron simsii HOM05D006658 ORTHO05D008515 2.4e-110 402.5 251 81.7
Actinidia00076 Actinidia chinensis HOM05D006658 ORTHO05D008515 2.5e-107 392.5 250 79.2
MBI17_g29609_MAGBIO Magnolia biondii HOM05D006658 ORTHO05D008515 3.0e-105 385.6 248 77.4
TAR365G0289 Trochodendron aralioides HOM05D006658 ORTHO05D008515 1.5e-104 383.3 251 76.1
TWI53G0915 Tripterygium wilfordii HOM05D006658 ORTHO05D008515 1.6e-103 379.8 253 74.7
Cfa015553 Carpinus fangiana HOM05D006658 ORTHO05D008515 1.1e-102 377.1 252 74.2
Haze_00994 Corylus avellana HOM05D006658 ORTHO05D008515 1.8e-102 376.3 252 74.2
Dinv38362 Davidia involucrata HOM05D006658 ORTHO05D008515 5.3e-102 374.8 251 76.9
Potri.008G199900 Populus trichocarpa HOM05D006658 ORTHO05D008515 6.9e-102 374.4 252 75.0
Manes.15G021400 Manihot esculenta HOM05D006658 ORTHO05D008515 9.0e-102 374.0 252 73.8
CiPaw.02G090200 Carya illinoinensis HOM05D006658 ORTHO05D008515 5.9e-101 371.3 252 72.2
MD13G1180000 Malus domestica HOM05D006658 ORTHO05D008515 1.7e-100 369.8 248 72.6
Atru.chr4.2671 Acer truncatum HOM05D006658 ORTHO05D008515 3.8e-100 368.6 252 72.6
QL06p005937 Quercus lobata HOM05D006658 ORTHO05D008515 6.5e-100 367.9 250 72.8
Eucgr.E03351 Eucalyptus grandis HOM05D006658 ORTHO05D008515 8.5e-100 367.5 252 72.2
FvH4_4g14170 Fragaria vesca HOM05D006658 ORTHO05D008515 1.1e-99 367.1 252 71.0
FAN12G0854 Fragaria x ananassa HOM05D006658 ORTHO05D008515 1.1e-99 367.1 252 71.0
RcHm_v2.0_Chr4g0419051 Rosa chinensis HOM05D006658 ORTHO05D008515 5.5e-99 364.8 252 71.0
Prupe.1G148500 Prunus persica HOM05D006658 ORTHO05D008515 9.4e-99 364.0 252 71.0
Sed0019307 Sechium edule HOM05D006658 ORTHO05D008515 4.6e-98 361.7 246 72.0
GSVIVG01017866001 Vitis vinifera HOM05D006658 ORTHO05D008515 6.1e-98 361.3 260 70.8
Cpa.g.sc16.52 Carica papaya HOM05D006658 ORTHO05D008515 7.9e-98 360.9 252 72.6
Sabra08G0161000 Salix brachista HOM05D006658 ORTHO05D008515 7.9e-98 360.9 264 71.6
MELO3C021391.2 Cucumis melo HOM05D006658 ORTHO05D008515 1.0e-97 360.5 246 71.1
Lsat_1_v5_gn_5_165480 Lactuca sativa HOM05D006658 ORTHO05D008515 1.0e-97 360.5 249 73.5
Ciclev10005116m.g Citrus clementina HOM05D006658 ORTHO05D008515 1.4e-97 360.1 252 71.0
Aqoxy2G03225 Aquilegia oxysepala HOM05D006658 ORTHO05D008515 2.3e-97 359.4 251 71.3
HanXRQChr12g0359491 Helianthus annuus HOM05D006658 ORTHO05D008515 2.3e-97 359.4 249 72.7
FAN22G2256 Fragaria x ananassa HOM05D006658 ORTHO05D008515 6.7e-97 357.8 241 73.0
PSO170G4721 Papaver somniferum HOM05D006658 ORTHO05D008515 8.8e-97 357.5 251 71.7
Os05g0400600 Oryza sativa ssp. japonica HOM05D006658 ORTHO05D008515 1.1e-96 357.1 250 70.4
CsaV3_6G005460 Cucumis sativus L. HOM05D006658 ORTHO05D008515 1.5e-96 356.7 246 70.7
Cc03_g02920 Coffea canephora HOM05D006658 ORTHO05D008515 2.0e-96 356.3 249 72.3
PSO407G0441 Papaver somniferum HOM05D006658 ORTHO05D008515 2.0e-96 356.3 251 71.7
Gorai.006G218300 Gossypium raimondii HOM05D006658 ORTHO05D008515 5.7e-96 354.8 249 71.5
ClCG06G005690 Citrullus lanatus HOM05D006658 ORTHO05D008515 7.4e-96 354.4 246 70.3
CANSAT78G1897 Cannabis sativa HOM05D006658 ORTHO05D008515 2.8e-95 352.4 252 68.3
Thecc.04G218900 Theobroma cacao HOM05D006658 ORTHO05D008515 4.8e-95 351.7 251 70.9
arahy.Tifrunner.gnm1.ann1.V9Y9T8 Arachis hypogaea HOM05D006658 ORTHO05D008515 4.1e-94 348.6 251 70.5
VMungo0540G0090 Vigna mungo HOM05D006658 ORTHO05D008515 1.2e-93 347.1 251 69.7
Phvul.006G155900 Phaseolus vulgaris HOM05D006658 ORTHO05D008515 1.5e-93 346.7 251 68.9
Glyma.15G101900 Glycine max HOM05D006658 ORTHO05D008515 7.7e-93 344.4 251 68.9
SalBow5G3198 Salvia bowleyana HOM05D006658 ORTHO05D008515 7.7e-93 344.4 248 69.8
Migut.N00139 Erythranthe guttata HOM05D006658 ORTHO05D008515 1.3e-92 343.6 248 69.4
arahy.Tifrunner.gnm1.ann1.Q3CYV3 Arachis hypogaea HOM05D006658 ORTHO05D008515 1.7e-92 343.2 251 69.3
Lj6g0017983 Lotus japonicus HOM05D006658 ORTHO05D008515 1.7e-92 343.2 251 69.7
CSS0004357 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 2.2e-92 342.8 229 79.9
PGR065G0004 Punica granatum HOM05D006658 ORTHO05D008515 6.5e-92 341.3 251 67.3
MSTRG.24762 Avicennia marina HOM05D006658 ORTHO05D008515 1.1e-91 340.5 250 66.8
HPP92_001401 Vanilla planifolia HOM05D006658 ORTHO05D008515 1.1e-91 340.5 249 69.9
Sc13g0003830 Simmondsia chinensis HOM05D006658 ORTHO05D008515 1.4e-91 340.1 249 67.5
CAN.G522.10 Capsicum annuum HOM05D006658 ORTHO05D008515 1.9e-91 339.7 244 70.1
ECA234G3592 Erigeron canadensis HOM05D006658 ORTHO05D008515 2.5e-91 339.3 250 69.6
Zm00001eb346810 Zea mays HOM05D006658 ORTHO05D008515 2.5e-91 339.3 250 67.2
ATR0626G018 Amborella trichopoda HOM05D006658 ORTHO05D007095 3.2e-91 339.0 236 72.0
FAN07G2752 Fragaria x ananassa HOM05D006658 ORTHO05D008515 4.2e-91 338.6 283 62.5
Lalb_Chr15g0087271 Lupinus albus HOM05D006658 ORTHO05D008515 7.2e-91 337.8 251 68.1
Sopen01g032090 Solanum pennellii HOM05D006658 ORTHO05D008515 7.2e-91 337.8 245 69.0
Solyc01g080300.4 Solanum lycopersicum HOM05D006658 ORTHO05D008515 9.4e-91 337.4 245 68.6
SGA_v2.0_scaffold107G30765 Striga asiatica HOM05D006658 ORTHO05D008515 1.2e-90 337.0 252 66.7
Medtr2g021220 Medicago truncatula HOM05D006658 ORTHO05D008515 1.6e-90 336.7 251 68.1
DCAR_027140 Daucus carota HOM05D006658 ORTHO05D008515 2.7e-90 335.9 252 69.4
PGSC0003DMG400004353 Solanum tuberosum HOM05D006658 ORTHO05D008515 2.7e-90 335.9 245 68.6
BcaB04g19174 Brassica carinata HOM05D006658 ORTHO05D008515 4.7e-90 335.1 251 68.1
Ca_00605_v3 Cicer arietinum L. HOM05D000887 ORTHO05D000908 6.1e-90 334.7 251 67.3
Gohir.A09G200700 Gossypium hirsutum HOM05D006658 ORTHO05D008515 7.9e-90 334.3 226 74.3
Peaxi162Scf00095g00723 Petunia axillaris HOM05D006658 ORTHO05D008515 5.1e-89 331.6 255 65.5
Gohir.D09G194900 Gossypium hirsutum HOM05D006658 ORTHO05D008515 6.7e-89 331.3 226 73.5
CARHR097540 Cardamine hirsuta HOM05D006658 ORTHO05D008515 1.1e-88 330.5 251 66.1
Thhalv10020897m.g Eutrema salsugineum HOM05D006658 ORTHO05D008515 1.1e-88 330.5 251 66.5
Carub.0003s2162 Capsella rubella HOM05D006658 ORTHO05D008515 2.0e-88 329.7 251 66.5
Sp3g19610 Schrenkiella parvula HOM05D006658 ORTHO05D008515 2.0e-88 329.7 251 66.5
TPR.G28916 Trifolium pratense HOM05D000887 ORTHO05D000908 7.4e-88 327.8 251 67.3
AT3G21580 Arabidopsis thaliana HOM05D006658 ORTHO05D008515 9.7e-88 327.4 251 66.1
BcaC01g03498 Brassica carinata HOM05D006658 ORTHO05D008515 9.7e-88 327.4 251 66.9
A03p42320 Brassica napus HOM05D006658 ORTHO05D008515 9.7e-88 327.4 251 66.9
BraA03t13384Z Brassica rapa HOM05D006658 ORTHO05D008515 9.7e-88 327.4 251 66.9
Aa31sc174G10 Aethionema arabicum HOM05D006658 ORTHO05D008515 4.8e-87 325.1 249 66.3
AL3G35700 Arabidopsis lyrata HOM05D006658 ORTHO05D008515 1.1e-86 323.9 251 65.7
Nitab4.5_0003070g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008515 4.1e-86 322.0 279 61.3
THA.LOC104820222 Tarenaya hassleriana HOM05D006658 ORTHO05D008515 2.0e-85 319.7 252 63.9
BolC3t17462H Brassica oleracea HOM05D006658 ORTHO05D008515 7.7e-85 317.8 251 65.3
EL10Ac4g08937 Beta vulgaris HOM05D006658 ORTHO05D008515 1.0e-84 317.4 251 64.1
C03p51780 Brassica napus HOM05D006658 ORTHO05D008515 1.3e-84 317.0 251 65.3
CDE02G1914 Ceratophyllum demersum HOM05D006658 ORTHO05D008515 8.5e-84 314.3 226 71.2
Psat5g176560 Pisum sativum HOM05D006658 ORTHO05D008515 2.1e-82 309.7 257 63.8
SEGI_40702 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 2.7e-82 309.3 250 60.8
COL.COLO4_21620 Corchorus olitorius HOM05D006658 ORTHO05D008515 1.1e-80 303.9 252 64.7
Nn4g26153 Nelumbo nucifera HOM05D006658 ORTHO05D008515 1.7e-79 300.1 247 62.3
Duzib212G0844 Durio zibethinus HOM05D006658 ORTHO05D008515 2.2e-79 299.7 206 73.3
AUR62004779 Chenopodium quinoa HOM05D006658 ORTHO05D008515 1.8e-78 296.6 226 66.8
Mapoly0015s0173 Marchantia polymorpha HOM05D006658 ORTHO05D008515 8.0e-74 281.2 243 58.4
Pp3c16_5660 Physcomitrium patens HOM05D006658 ORTHO05D008515 1.1e-70 270.8 242 54.5
Psat1g186040 Pisum sativum HOM05D006658 ORTHO05D008515 4.1e-70 268.9 188 71.8
RcHm_v2.0_Chr2g0086241 Rosa chinensis HOM05D006658 ORTHO05D008515 1.6e-69 266.9 184 70.7
SMO361G0230 Selaginella moellendorffii HOM05D006658 ORTHO05D008515 1.0e-68 264.2 250 53.6
PGR004G0022 Punica granatum HOM05D006658 ORTHO05D008515 1.3e-68 263.8 198 66.2
RcHm_v2.0_Chr5g0064291 Rosa chinensis HOM05D006658 ORTHO05D008515 1.3e-68 263.8 184 70.1
unitig_61.g26008 Utricularia gibba HOM05D006658 ORTHO05D008515 3.2e-67 259.2 254 53.1
Hund26050 Selenicereus undatus HOM05D006658 ORTHO05D008515 5.5e-67 258.5 247 57.5
AUR62003399 Chenopodium quinoa HOM05D006658 ORTHO05D008515 1.0e-65 254.2 251 55.0
Nn1g02127 Nelumbo nucifera HOM05D006658 ORTHO05D008515 1.7e-60 236.9 200 64.0
AagrBONN_evm.TU.Sc2ySwM_228.2900 Anthoceros agrestis HOM05D006670 ORTHO05D008715 2.9e-60 236.1 250 47.2
Ah.06g191650 Amaranthus hybridus HOM05D006658 ORTHO05D008515 2.5e-59 233.0 193 61.7
Manes.07G121800 Manihot esculenta HOM05D006658 ORTHO05D008515 2.8e-58 229.6 159 71.7
CDE09G1086 Ceratophyllum demersum HOM05D002356 ORTHO05D002546 4.7e-58 228.8 161 72.7
RcHm_v2.0_Chr5g0045591 Rosa chinensis HOM05D006658 ORTHO05D008515 4.7e-58 228.8 184 63.0
Lj3A803G20 Lonicera japonica HOM05D006658 ORTHO05D008515 7.5e-56 221.5 183 62.8
Glyma.13G210900 Glycine max HOM05D006658 ORTHO05D008515 2.0e-53 213.4 184 60.3
SEGI_22040 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 1.6e-42 177.2 137 65.0
Cre12.g533950 Chlamydomonas reinhardtii HOM05D006658 ORTHO05D008515 3.1e-41 172.9 240 39.6
PRCOL_00004089 Prasinoderma coloniale HOM05D006658 ORTHO05D008515 1.9e-35 153.7 214 39.7
MCO01G250 Micromonas commoda HOM05D006658 ORTHO05D008515 2.1e-34 150.2 210 35.2
Peaxi162Scf00095g00724 Petunia axillaris HOM05D006658 ORTHO05D008515 1.2e-32 144.4 205 43.9
Oeu023652.1 Olea europaea HOM05D006658 ORTHO05D008515 2.9e-31 139.8 220 43.6
Psat2g070960 Pisum sativum HOM05D006658 ORTHO05D008515 1.2e-26 124.4 238 38.2
Nitab4.5_0000059g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008979 8.1e-26 121.7 207 42.0
Actinidia32371 Actinidia chinensis HOM05D006658 ORTHO05D008515 2.4e-25 120.2 82 78.0
Actinidia08452 Actinidia chinensis HOM05D006658 ORTHO05D008515 2.0e-24 117.1 82 74.4
HPP92_001340 Vanilla planifolia HOM05D006658 ORTHO05D008515 1.4e-22 110.9 82 63.4
HanXRQChr09g0256171 Helianthus annuus HOM05D006658 ORTHO05D008515 3.8e-15 86.3 64 62.5
HanXRQChr04g0123631 Helianthus annuus HOM05D034347 ORTHO05D227534 2.6e-08 63.5 46 73.9


User provided reference genes

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