Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022382 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D015016 6.1e-94 347.4 171 100.0
CSS0011152 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D015016 8.0e-78 293.9 172 87.2
CSS0036155 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D015016 6.8e-45 184.5 161 64.0
CSS0040448 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D015016 4.4e-44 181.8 140 70.0
CSS0019100 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D003724 4.9e-43 178.3 121 79.3
CSS0043147 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D015016 3.1e-37 159.1 163 58.3
Dinv07525 Davidia involucrata HOM05D002352 ORTHO05D003724 3.4e-36 155.6 113 69.9
Rhsim02G0123500 Rhododendron simsii HOM05D002352 ORTHO05D003724 4.4e-36 155.2 119 66.4
MSTRG.7313 Avicennia marina HOM05D002352 ORTHO05D003724 5.8e-36 154.8 113 71.7
Actinidia07573 Actinidia chinensis HOM05D002352 ORTHO05D003724 2.2e-35 152.9 113 71.7
SGA_v2.0_scaffold22G09771 Striga asiatica HOM05D002352 ORTHO05D003724 2.2e-35 152.9 120 65.0
Dinv40531 Davidia involucrata HOM05D002352 ORTHO05D003724 2.9e-35 152.5 113 70.8
vmacro15889 Vaccinium macrocarpon HOM05D002352 ORTHO05D003724 6.4e-35 151.4 112 67.9
Solyc02g078640.3 Solanum lycopersicum HOM05D002352 ORTHO05D003724 1.1e-34 150.6 120 64.2
Sopen02g023500 Solanum pennellii HOM05D002352 ORTHO05D003724 1.1e-34 150.6 120 64.2
CAN.G1627.24 Capsicum annuum HOM05D002352 ORTHO05D003724 3.2e-34 149.1 120 63.3
COL.COLO4_22862 Corchorus olitorius HOM05D002352 ORTHO05D003724 3.2e-34 149.1 113 67.3
Lj2C285G5 Lonicera japonica HOM05D002352 ORTHO05D003724 5.4e-34 148.3 113 67.3
Aqoxy1G02582 Aquilegia oxysepala HOM05D002352 ORTHO05D003724 7.1e-34 147.9 113 67.3
Cpa.g.sc192.7 Carica papaya HOM05D002352 ORTHO05D003724 7.1e-34 147.9 113 65.5
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 7.1e-34 147.9 113 68.1
HanXRQChr04g0123991 Helianthus annuus HOM05D002352 ORTHO05D003724 9.3e-34 147.5 112 66.1
Sc17g0006350 Simmondsia chinensis HOM05D002352 ORTHO05D003724 3.5e-33 145.6 111 64.0
Migut.M01176 Erythranthe guttata HOM05D002352 ORTHO05D003724 4.6e-33 145.2 120 61.7
Manes.16G062100 Manihot esculenta HOM05D002352 ORTHO05D003724 6.0e-33 144.8 113 64.6
Potri.001G443200 Populus trichocarpa HOM05D002352 ORTHO05D003724 7.8e-33 144.4 113 63.7
DCAR_004114 Daucus carota HOM05D002352 ORTHO05D003724 1.3e-32 143.7 111 64.0
ECA236G2885 Erigeron canadensis HOM05D002352 ORTHO05D003724 1.3e-32 143.7 112 63.4
RhsimUnG0043500 Rhododendron simsii HOM05D002352 ORTHO05D003724 1.3e-32 143.7 113 64.6
SalBow8G3229 Salvia bowleyana HOM05D002352 ORTHO05D003724 2.3e-32 142.9 131 57.3
SGA_v2.0_scaffold100G29641 Striga asiatica HOM05D002352 ORTHO05D003724 2.3e-32 142.9 131 57.3
Sabra16G0301500 Salix brachista HOM05D002352 ORTHO05D003724 3.0e-32 142.5 113 62.8
unitig_46.g18629 Utricularia gibba HOM05D002352 ORTHO05D003724 3.9e-32 142.1 132 58.3
Lsat_1_v5_gn_7_19361 Lactuca sativa HOM05D002352 ORTHO05D003724 5.1e-32 141.7 111 64.0
Potri.011G153700 Populus trichocarpa HOM05D002352 ORTHO05D003724 5.1e-32 141.7 113 61.1
Peaxi162Scf00524g00056 Petunia axillaris HOM05D002352 ORTHO05D003724 6.6e-32 141.4 113 63.7
Sabra16G0299900 Salix brachista HOM05D002352 ORTHO05D003724 8.7e-32 141.0 113 61.9
Gohir.A05G113200 Gossypium hirsutum HOM05D002352 ORTHO05D003724 1.5e-31 140.2 113 63.7
Gohir.D05G113700 Gossypium hirsutum HOM05D002352 ORTHO05D003724 1.5e-31 140.2 113 63.7
QL05p065250 Quercus lobata HOM05D002352 ORTHO05D003724 1.5e-31 140.2 113 65.5
Nn012s41459 Nelumbo nucifera HOM05D002352 ORTHO05D003724 3.3e-31 139.0 120 60.8
Nn1g06636 Nelumbo nucifera HOM05D002352 ORTHO05D003724 3.3e-31 139.0 120 60.8
Ciclev10014013m.g Citrus clementina HOM05D002352 ORTHO05D003724 4.3e-31 138.7 135 55.6
Gorai.009G117700 Gossypium raimondii HOM05D002352 ORTHO05D003724 4.3e-31 138.7 113 62.8
Thecc.06G016700 Theobroma cacao HOM05D002352 ORTHO05D003724 4.3e-31 138.7 113 63.7
Duzib160G0039 Durio zibethinus HOM05D002352 ORTHO05D003724 5.6e-31 138.3 113 63.7
Atru.chr10.646 Acer truncatum HOM05D002352 ORTHO05D003724 7.3e-31 137.9 136 55.1
Cc02_g12860 Coffea canephora HOM05D002352 ORTHO05D003724 7.3e-31 137.9 121 58.7
Lj1C1209G5 Lonicera japonica HOM05D002352 ORTHO05D003724 9.6e-31 137.5 121 59.5
TWI60G0805 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 1.6e-30 136.7 121 58.7
unitig_37.g12343 Utricularia gibba HOM05D002352 ORTHO05D003724 1.6e-30 136.7 112 62.5
Eucgr.D00655 Eucalyptus grandis HOM05D002352 ORTHO05D003724 2.1e-30 136.3 113 64.6
Sabra11G0146000 Salix brachista HOM05D002352 ORTHO05D003724 2.8e-30 136.0 113 58.4
PGR004G1771 Punica granatum HOM05D002352 ORTHO05D003724 6.2e-30 134.8 131 55.7
CiPaw.08G016100 Carya illinoinensis HOM05D002352 ORTHO05D003724 8.1e-30 134.4 121 59.5
CiPaw.07G217200 Carya illinoinensis HOM05D002352 ORTHO05D003724 1.1e-29 134.0 113 61.9
RcHm_v2.0_Chr1g0383361 Rosa chinensis HOM05D002352 ORTHO05D003724 1.1e-29 134.0 113 63.7
TWI32G1048 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 1.1e-29 134.0 122 57.4
FAN01G0441 Fragaria x ananassa HOM05D002352 ORTHO05D003724 1.8e-29 133.3 113 63.7
FAN03G0871 Fragaria x ananassa HOM05D002352 ORTHO05D003724 1.8e-29 133.3 113 63.7
FAN10G0813 Fragaria x ananassa HOM05D002352 ORTHO05D003724 1.8e-29 133.3 113 63.7
FAN10G3833 Fragaria x ananassa HOM05D002352 ORTHO05D003724 1.8e-29 133.3 113 63.7
MBI19_g16739_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 2.4e-29 132.9 113 61.1
Glyma.10G207500 Glycine max HOM05D002352 ORTHO05D003724 3.1e-29 132.5 120 56.7
HanXRQChr13g0393551 Helianthus annuus HOM05D002352 ORTHO05D003724 3.1e-29 132.5 112 59.8
Hund21252 Selenicereus undatus HOM05D002352 ORTHO05D003724 4.0e-29 132.1 111 57.7
FvH4_7g33390 Fragaria vesca HOM05D002352 ORTHO05D003724 5.3e-29 131.7 113 63.7
EL10Ac8g20329 Beta vulgaris HOM05D002352 ORTHO05D003724 6.9e-29 131.3 111 57.7
AUR62014778 Chenopodium quinoa HOM05D002352 ORTHO05D003724 1.2e-28 130.6 110 57.3
AUR62016965 Chenopodium quinoa HOM05D002352 ORTHO05D003724 1.2e-28 130.6 111 57.7
CANSAT21G2414 Cannabis sativa HOM05D002352 ORTHO05D003724 2.0e-28 129.8 113 60.2
Phvul.007G099200 Phaseolus vulgaris HOM05D002352 ORTHO05D003724 2.0e-28 129.8 120 55.8
Ca_10540_v3 Cicer arietinum L. HOM05D002352 ORTHO05D003724 3.4e-28 129.0 113 60.2
Lalb_Chr21g0313661 Lupinus albus HOM05D002352 ORTHO05D003724 3.4e-28 129.0 113 58.4
Haze_05987 Corylus avellana HOM05D002352 ORTHO05D003724 4.5e-28 128.6 121 57.9
Lalb_Chr02g0152081 Lupinus albus HOM05D002352 ORTHO05D003724 4.5e-28 128.6 121 53.7
MD07G1304000 Malus domestica HOM05D002352 ORTHO05D003724 4.5e-28 128.6 113 59.3
Lj5g0002534 Lotus japonicus HOM05D002352 ORTHO05D003724 5.8e-28 128.3 120 55.8
MBI19_g04166_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 5.8e-28 128.3 107 60.7
Medtr1g094165 Medicago truncatula HOM05D002352 ORTHO05D003724 5.8e-28 128.3 113 59.3
Cfa000747 Carpinus fangiana HOM05D002352 ORTHO05D003724 7.6e-28 127.9 121 57.0
THA.LOC104798541 Tarenaya hassleriana HOM05D002352 ORTHO05D003724 7.6e-28 127.9 107 58.9
Psat6g181080 Pisum sativum HOM05D002352 ORTHO05D003724 9.9e-28 127.5 113 59.3
TPR.G10297 Trifolium pratense HOM05D002352 ORTHO05D003724 9.9e-28 127.5 113 57.5
Prupe.1G083500 Prunus persica HOM05D002352 ORTHO05D003724 1.3e-27 127.1 113 60.2
Glyma.20G183400 Glycine max HOM05D002352 ORTHO05D003724 1.7e-27 126.7 120 55.8
AT2G35630 Arabidopsis thaliana HOM05D002352 ORTHO05D003724 2.2e-27 126.3 107 58.9
Carub.0004s1734 Capsella rubella HOM05D002352 ORTHO05D003724 3.8e-27 125.6 107 58.9
Lsat_1_v5_gn_7_48800 Lactuca sativa HOM05D002352 ORTHO05D003724 4.9e-27 125.2 110 58.2
MD01G1232200 Malus domestica HOM05D002352 ORTHO05D003724 4.9e-27 125.2 113 58.4
Aa31LG9G15920 Aethionema arabicum HOM05D002352 ORTHO05D003724 6.4e-27 124.8 145 47.6
C03p22870 Brassica napus HOM05D002352 ORTHO05D003724 6.4e-27 124.8 107 57.9
BolC3t14686H Brassica oleracea HOM05D002352 ORTHO05D003724 6.4e-27 124.8 107 57.9
BraA03t11214Z Brassica rapa HOM05D002352 ORTHO05D003724 6.4e-27 124.8 107 57.9
MD07G1271900 Malus domestica HOM05D002352 ORTHO05D003724 6.4e-27 124.8 170 44.1
A03p19610 Brassica napus HOM05D002352 ORTHO05D003724 1.1e-26 124.0 107 57.0
SEGI_02636 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 1.1e-26 124.0 112 55.4
Ah.14g089230 Amaranthus hybridus HOM05D002352 ORTHO05D003724 1.4e-26 123.6 110 57.3
AL4G31700 Arabidopsis lyrata HOM05D002352 ORTHO05D003724 1.4e-26 123.6 107 57.9
arahy.Tifrunner.gnm1.ann1.XI7UL2 Arachis hypogaea HOM05D002352 ORTHO05D003724 1.9e-26 123.2 113 58.4
SHI23480 Sapria himalayana HOM05D002352 ORTHO05D016619 2.4e-26 122.9 111 56.8
BcaB01g03895 Brassica carinata HOM05D002352 ORTHO05D003724 3.2e-26 122.5 107 57.0
CARHR129850 Cardamine hirsuta HOM05D002352 ORTHO05D003724 3.2e-26 122.5 107 57.0
Thhalv10016124m.g Eutrema salsugineum HOM05D002352 ORTHO05D003724 3.2e-26 122.5 107 57.0
arahy.Tifrunner.gnm1.ann1.Q9T26T Arachis hypogaea HOM05D002352 ORTHO05D003724 4.2e-26 122.1 113 57.5
BcaB02g09406 Brassica carinata HOM05D002352 ORTHO05D003724 4.2e-26 122.1 107 57.0
BraA05t19946Z Brassica rapa HOM05D002352 ORTHO05D003724 5.4e-26 121.7 107 57.0
HPP92_018014 Vanilla planifolia HOM05D002352 ORTHO05D003724 5.4e-26 121.7 113 56.6
BcaC02g11684 Brassica carinata HOM05D002352 ORTHO05D003724 7.1e-26 121.3 107 56.1
C04p12410 Brassica napus HOM05D002352 ORTHO05D003724 7.1e-26 121.3 107 56.1
BolC4t22889H Brassica oleracea HOM05D002352 ORTHO05D003724 7.1e-26 121.3 107 56.1
HPP92_026673 Vanilla planifolia HOM05D002352 ORTHO05D003724 7.1e-26 121.3 113 56.6
A05p10050 Brassica napus HOM05D002352 ORTHO05D003724 1.6e-25 120.2 107 56.1
Ah.09g235790 Amaranthus hybridus HOM05D002352 ORTHO05D003724 2.1e-25 119.8 111 57.7
Sed0013080 Sechium edule HOM05D002352 ORTHO05D003724 2.7e-25 119.4 113 55.8
Sp4g17870 Schrenkiella parvula HOM05D002352 ORTHO05D003724 4.6e-25 118.6 107 56.1
CDE05G2722 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 7.9e-25 117.9 107 54.2
CDE05G3196 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 1.0e-24 117.5 109 52.3
PSO541G4457 Papaver somniferum HOM05D002352 ORTHO05D003724 1.0e-24 117.5 113 53.1
Medtr8g023010 Medicago truncatula HOM05D002352 ORTHO05D003724 5.1e-24 115.2 112 56.2
ClCG01G025480 Citrullus lanatus HOM05D002352 ORTHO05D003724 1.5e-23 113.6 113 52.2
SEGI_16535 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 3.3e-23 112.5 113 51.3
ATR1127G018 Amborella trichopoda HOM05D002352 ORTHO05D003724 5.6e-23 111.7 136 49.3
MELO3C007036.2 Cucumis melo HOM05D002352 ORTHO05D003724 9.6e-23 110.9 113 51.3
CsaV3_6G052730 Cucumis sativus L. HOM05D002352 ORTHO05D003724 1.6e-22 110.2 113 51.3
Os01g0816400 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 4.0e-21 105.5 109 51.4
Oeu043712.2 Olea europaea HOM05D002352 ORTHO05D003724 5.8e-20 101.7 77 63.6
Zm00001eb369050 Zea mays HOM05D002352 ORTHO05D003724 7.6e-20 101.3 109 50.5
Zm00001eb149800 Zea mays HOM05D002352 ORTHO05D003724 1.3e-19 100.5 109 49.5
HanXRQChr11g0324561 Helianthus annuus HOM05D002352 ORTHO05D015016 2.2e-19 99.8 101 54.5
Zm00001eb214370 Zea mays HOM05D002352 ORTHO05D016619 5.5e-18 95.1 109 48.6
Hma1.2p1_1294F.1_g273870 Hydrangea macrophylla HOM05D002352 ORTHO05D015016 1.1e-15 87.4 114 50.0
Hma1.2p1_1431F.1_g282990 Hydrangea macrophylla HOM05D002352 ORTHO05D015016 1.5e-15 87.0 113 48.7
Lalb_Chr21g0313501 Lupinus albus HOM05D002352 ORTHO05D003724 1.6e-14 83.6 83 53.0
SMO230G0112 Selaginella moellendorffii HOM05D002352 ORTHO05D003724 1.4e-13 80.5 119 37.0
CSS0012113 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.8e-13 80.1 41 92.7
CSS0029081 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.8e-13 80.1 41 92.7
Nitab4.5_0009488g0020 Nicotiana tabacum HOM05D002352 ORTHO05D003724 5.3e-13 78.6 53 71.7
CSS0040212 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D007190 2.6e-12 76.3 45 80.0
Mapoly0009s0135 Marchantia polymorpha HOM05D002352 ORTHO05D003724 5.8e-12 75.1 107 34.6
MD07G1271400 Malus domestica HOM05D002352 ORTHO05D016619 1.7e-11 73.6 51 66.7
TPR.G38072 Trifolium pratense HOM05D002352 ORTHO05D014906 2.9e-11 72.8 113 40.7
AagrBONN_evm.TU.Sc2ySwM_228.3370 Anthoceros agrestis HOM05D002352 ORTHO05D003724 5.0e-11 72.0 114 35.1
TPR.G18787 Trifolium pratense HOM05D002352 ORTHO05D014906 5.0e-11 72.0 50 66.0
TAR626G1549 Trochodendron aralioides HOM05D002352 ORTHO05D003724 1.9e-10 70.1 63 60.3
Pp3c15_23870 Physcomitrium patens HOM05D002352 ORTHO05D003724 5.5e-10 68.6 108 37.0
Pp3c9_24390 Physcomitrium patens HOM05D002352 ORTHO05D003724 5.5e-10 68.6 108 36.1
Hma1.2p1_0356F.1_g134010 Hydrangea macrophylla HOM05D002352 ORTHO05D015016 4.6e-09 65.5 63 60.3
CSS0047837 Camellia sinensis var. sinensis HOM05D002793 ORTHO05D002965 9.7e-07 57.8 28 100.0
CBR_g39205 Chara braunii HOM05D002352 ORTHO05D003724 1.6e-06 57.0 77 32.5


User provided reference genes

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