Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022375 Camellia sinensis var. sinensis HOM05D021829 ORTHO05D109211 4.4e-50 201.1 106 100.0
CSS0025856 Camellia sinensis var. sinensis HOM05D021829 ORTHO05D110646 2.8e-44 181.8 106 93.4
CSS0036968 Camellia sinensis var. sinensis HOM05D021829 ORTHO05D000879 4.4e-42 174.5 108 90.7
CSS0044659 Camellia sinensis var. sinensis HOM05D021829 ORTHO05D000879 1.6e-28 129.4 108 75.0
CSS0005835 Camellia sinensis var. sinensis HOM05D021829 ORTHO05D000879 3.2e-24 115.2 106 66.0
CSS0028682 Camellia sinensis var. sinensis HOM05D021829 ORTHO05D109265 2.8e-20 102.1 104 60.6
vmacro20816 Vaccinium macrocarpon HOM05D000291 ORTHO05D000879 1.4e-16 89.7 76 67.1
Actinidia01277 Actinidia chinensis HOM05D000291 ORTHO05D000879 3.5e-15 85.1 76 68.4
CSS0003257 Camellia sinensis var. sinensis HOM05D000291 ORTHO05D000879 3.5e-15 85.1 106 53.8
Dinv25439 Davidia involucrata HOM05D000291 ORTHO05D000879 1.0e-14 83.6 79 63.3
Sabra18G0116600 Salix brachista HOM05D000291 ORTHO05D000879 2.5e-13 79.0 67 67.2
Hma1.2p1_1326F.1_g275810 Hydrangea macrophylla HOM05D000291 ORTHO05D000879 4.3e-13 78.2 79 60.8
Potri.018G142800 Populus trichocarpa HOM05D000291 ORTHO05D000879 7.3e-13 77.4 65 67.7
GSVIVG01010864001 Vitis vinifera HOM05D000291 ORTHO05D000879 2.1e-12 75.9 78 59.0
Potri.006G075800 Populus trichocarpa HOM05D000291 ORTHO05D000879 2.8e-12 75.5 67 62.7
Sabra06G0056500 Salix brachista HOM05D000291 ORTHO05D000879 2.8e-12 75.5 73 61.6
CiPaw.07G196800 Carya illinoinensis HOM05D000291 ORTHO05D000879 4.7e-12 74.7 76 59.2
VMungo1215G0077 Vigna mungo HOM05D000291 ORTHO05D000879 1.1e-11 73.6 54 75.9
Phvul.003G141500 Phaseolus vulgaris HOM05D000291 ORTHO05D000879 1.8e-11 72.8 89 52.8
Cfa013450 Carpinus fangiana HOM05D000291 ORTHO05D000879 3.1e-11 72.0 74 62.2
ClCG11G011780 Citrullus lanatus HOM05D000291 ORTHO05D000879 4.0e-11 71.6 76 60.5
Cpa.g.sc95.13 Carica papaya HOM05D000291 ORTHO05D000879 6.8e-11 70.9 58 69.0
Dinv41173 Davidia involucrata HOM05D000291 ORTHO05D000879 6.8e-11 70.9 81 56.8
Glyma.13G100400 Glycine max HOM05D000291 ORTHO05D000879 1.2e-10 70.1 72 59.7
Medtr2g037980 Medicago truncatula HOM05D000291 ORTHO05D000879 1.5e-10 69.7 49 75.5
Nitab4.5_0000007g0370 Nicotiana tabacum HOM05D000291 ORTHO05D000879 2.0e-10 69.3 78 52.6
CSS0039170 Camellia sinensis var. sinensis HOM05D000291 ORTHO05D000879 2.6e-10 68.9 58 72.4
CsaV3_2G008710 Cucumis sativus L. HOM05D000291 ORTHO05D000879 2.6e-10 68.9 76 56.6
Thecc.09G185800 Theobroma cacao HOM05D000291 ORTHO05D000879 3.4e-10 68.6 83 49.4
Ca_02104_v3 Cicer arietinum L. HOM05D000291 ORTHO05D000879 5.8e-10 67.8 41 85.4
Haze_22017 Corylus avellana HOM05D000291 ORTHO05D000879 9.9e-10 67.0 70 62.9
Atru.chr7.758 Acer truncatum HOM05D000291 ORTHO05D000879 1.3e-09 66.6 79 55.7
Atru.chr7.780 Acer truncatum HOM05D000291 ORTHO05D000879 1.3e-09 66.6 79 55.7
TAR383G0754 Trochodendron aralioides HOM05D000291 ORTHO05D000879 1.3e-09 66.6 79 55.7
CSS0022651 Camellia sinensis var. sinensis HOM05D000291 ORTHO05D000879 1.7e-09 66.2 43 76.7
Duzib168G0006 Durio zibethinus HOM05D000291 ORTHO05D000879 1.7e-09 66.2 82 54.9
Lj4g0023693 Lotus japonicus HOM05D000291 ORTHO05D000879 2.2e-09 65.9 48 75.0
Solyc12g017430.3 Solanum lycopersicum HOM05D000291 ORTHO05D000879 2.2e-09 65.9 69 53.6
Glyma.17G059500 Glycine max HOM05D000291 ORTHO05D000879 3.8e-09 65.1 47 76.6
Gohir.A05G002400 Gossypium hirsutum HOM05D000291 ORTHO05D000879 3.8e-09 65.1 74 52.7
Duzib150G0075 Durio zibethinus HOM05D000291 ORTHO05D000879 8.4e-09 63.9 73 54.8
COL.COLO4_07058 Corchorus olitorius HOM05D000291 ORTHO05D000879 1.1e-08 63.5 76 56.6
PGSC0003DMG400009667 Solanum tuberosum HOM05D000291 ORTHO05D000879 1.4e-08 63.2 77 49.4
Ca_21253_v3 Cicer arietinum L. HOM05D000291 ORTHO05D000879 1.9e-08 62.8 45 75.6
Gorai.009G002600 Gossypium raimondii HOM05D000291 ORTHO05D000879 2.4e-08 62.4 52 63.5
TPR.G5434 Trifolium pratense HOM05D000291 ORTHO05D000879 2.4e-08 62.4 50 66.0
CAN.G67.5 Capsicum annuum HOM05D000291 ORTHO05D000879 3.2e-08 62.0 81 44.4
MELO3C003976.2 Cucumis melo HOM05D000291 ORTHO05D000879 3.2e-08 62.0 74 52.7
Lalb_Chr13g0300021 Lupinus albus HOM05D000291 ORTHO05D000879 3.2e-08 62.0 52 65.4
MD16G1249100 Malus domestica HOM05D000291 ORTHO05D000879 3.2e-08 62.0 45 73.3
Psat1g145640 Pisum sativum HOM05D000291 ORTHO05D000879 3.2e-08 62.0 46 69.6
Sc18g0004190 Simmondsia chinensis HOM05D000291 ORTHO05D000879 3.2e-08 62.0 72 50.0
Lalb_Chr11g0074781 Lupinus albus HOM05D000291 ORTHO05D000879 5.4e-08 61.2 50 68.0
QL02p046816 Quercus lobata HOM05D000291 ORTHO05D000879 5.4e-08 61.2 69 58.0
MSTRG.19374 Avicennia marina HOM05D000291 ORTHO05D000879 1.6e-07 59.7 78 47.4
Glyma.15G165800 Glycine max HOM05D000291 ORTHO05D000879 1.6e-07 59.7 38 84.2
Nitab4.5_0001995g0060 Nicotiana tabacum HOM05D000291 ORTHO05D000879 1.6e-07 59.7 59 55.9
Psat4g013400 Pisum sativum HOM05D000291 ORTHO05D000879 1.6e-07 59.7 42 71.4
Lj6g0024154 Lotus japonicus HOM05D000291 ORTHO05D000879 2.1e-07 59.3 39 79.5
Medtr4g127440 Medicago truncatula HOM05D000291 ORTHO05D000879 2.1e-07 59.3 42 71.4
Nn8g40788 Nelumbo nucifera HOM05D000291 ORTHO05D000879 2.1e-07 59.3 71 56.3
Prupe.1G075800 Prunus persica HOM05D000291 ORTHO05D000879 3.5e-07 58.5 42 73.8
Eucgr.C02326 Eucalyptus grandis HOM05D000291 ORTHO05D000879 4.6e-07 58.2 36 80.6
Gohir.D05G003000 Gossypium hirsutum HOM05D000291 ORTHO05D000879 4.6e-07 58.2 51 60.8
Sc14g0001450 Simmondsia chinensis HOM05D000291 ORTHO05D000879 4.6e-07 58.2 78 48.7
TPR.G9000 Trifolium pratense HOM05D000291 ORTHO05D000879 7.8e-07 57.4 43 69.8
TWI34G0787 Tripterygium wilfordii HOM05D000291 ORTHO05D000879 7.8e-07 57.4 73 52.1
Glyma.09G059500 Glycine max HOM05D000291 ORTHO05D000879 1.3e-06 56.6 42 73.8
Hma1.2p1_0022F.1_g014490 Hydrangea macrophylla HOM05D000291 ORTHO05D000879 1.3e-06 56.6 80 50.0
TWI63G0722 Tripterygium wilfordii HOM05D000291 ORTHO05D000879 1.3e-06 56.6 78 48.7
Cc00_g20360 Coffea canephora HOM05D000291 ORTHO05D000879 1.7e-06 56.2 63 55.6
Nitab4.5_0000018g0040 Nicotiana tabacum HOM05D000291 ORTHO05D000879 1.7e-06 56.2 47 59.6
FAN07G2671 Fragaria x ananassa HOM05D000291 ORTHO05D000879 2.3e-06 55.8 46 67.4
FAN17G1456 Fragaria x ananassa HOM05D000291 ORTHO05D000879 2.3e-06 55.8 46 67.4
FAN22G1254 Fragaria x ananassa HOM05D000291 ORTHO05D000879 2.3e-06 55.8 46 67.4
Hund09060 Selenicereus undatus HOM05D000291 ORTHO05D000879 2.3e-06 55.8 43 69.8
Aqoxy7G02793 Aquilegia oxysepala HOM05D000291 ORTHO05D000879 3.9e-06 55.1 71 52.1
Oeu055539.1 Olea europaea HOM05D000291 ORTHO05D000879 3.9e-06 55.1 40 70.0
Ah.09g230230 Amaranthus hybridus HOM05D000291 ORTHO05D000879 5.1e-06 54.7 43 67.4
MSTRG.26543 Avicennia marina HOM05D000291 ORTHO05D000879 5.1e-06 54.7 77 48.1
Peaxi162Scf00124g00044 Petunia axillaris HOM05D000291 ORTHO05D000879 5.1e-06 54.7 79 45.6
PGR044G0232 Punica granatum HOM05D000291 ORTHO05D000879 6.6e-06 54.3 46 71.7
Sed0015547 Sechium edule HOM05D000291 ORTHO05D000879 6.6e-06 54.3 73 50.7
MD13G1242200 Malus domestica HOM05D000291 ORTHO05D000879 8.6e-06 53.9 64 51.6
Peaxi162Scf00006g02414 Petunia axillaris HOM05D000291 ORTHO05D000879 8.6e-06 53.9 73 42.5


User provided reference genes

Program Settings