Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022371 Camellia sinensis var. sinensis HOM05D006326 ORTHO05D007589 3.6e-38 161.0 76 100.0
CSS0039389 Camellia sinensis var. sinensis HOM05D006326 ORTHO05D007589 1.1e-18 96.3 63 74.6
Dinv07946 Davidia involucrata HOM05D006326 ORTHO05D007589 1.4e-18 95.9 63 74.6
Actinidia17957 Actinidia chinensis HOM05D006326 ORTHO05D007589 2.4e-18 95.1 63 74.6
Atru.chr1.1394 Acer truncatum HOM05D006326 ORTHO05D007589 3.2e-18 94.7 63 71.4
GSVIVG01033643001 Vitis vinifera HOM05D006326 ORTHO05D007589 3.2e-18 94.7 63 73.0
Actinidia37880 Actinidia chinensis HOM05D006326 ORTHO05D007589 9.2e-18 93.2 63 73.0
Oeu022970.2 Olea europaea HOM05D006326 ORTHO05D007589 1.6e-17 92.4 63 71.4
vmacro07781 Vaccinium macrocarpon HOM05D006326 ORTHO05D007589 2.7e-17 91.7 63 71.4
Dinv05303 Davidia involucrata HOM05D006326 ORTHO05D007589 2.3e-16 88.6 63 68.3
MSTRG.19798 Avicennia marina HOM05D006326 ORTHO05D007589 3.0e-16 88.2 63 66.7
SalBow6G7225 Salvia bowleyana HOM05D006326 ORTHO05D007589 3.0e-16 88.2 63 66.7
ClCG04G005630 Citrullus lanatus HOM05D006326 ORTHO05D007589 3.9e-16 87.8 63 66.7
MELO3C019097.2 Cucumis melo HOM05D006326 ORTHO05D007589 3.9e-16 87.8 63 66.7
Rhsim03G0036800 Rhododendron simsii HOM05D006326 ORTHO05D007589 5.1e-16 87.4 63 68.3
TAR623G0088 Trochodendron aralioides HOM05D006326 ORTHO05D007589 6.6e-16 87.0 63 69.8
Oeu057784.1 Olea europaea HOM05D006326 ORTHO05D007589 8.6e-16 86.7 63 68.3
Oeu057785.1 Olea europaea HOM05D006326 ORTHO05D007589 8.6e-16 86.7 63 68.3
CANSAT64G1393 Cannabis sativa HOM05D006326 ORTHO05D007589 1.1e-15 86.3 61 67.2
Hma1.2p1_0252F.1_g102780 Hydrangea macrophylla HOM05D006326 ORTHO05D007589 1.1e-15 86.3 63 65.1
Manes.09G004100 Manihot esculenta HOM05D006326 ORTHO05D007589 1.5e-15 85.9 64 64.1
AUR62018355 Chenopodium quinoa HOM05D006326 ORTHO05D007589 1.9e-15 85.5 63 66.7
CiPaw.10G040500 Carya illinoinensis HOM05D006326 ORTHO05D007589 2.5e-15 85.1 64 68.8
AUR62030307 Chenopodium quinoa HOM05D006326 ORTHO05D007589 3.3e-15 84.7 63 65.1
CsaV3_4G029490 Cucumis sativus L. HOM05D006326 ORTHO05D007589 3.3e-15 84.7 63 65.1
Lsat_1_v5_gn_9_29721 Lactuca sativa HOM05D006326 ORTHO05D007589 3.3e-15 84.7 63 66.7
ECA247G0820 Erigeron canadensis HOM05D006326 ORTHO05D007589 4.3e-15 84.3 63 65.1
Migut.J01646 Erythranthe guttata HOM05D006326 ORTHO05D007589 4.3e-15 84.3 63 65.1
Aqoxy1G00376 Aquilegia oxysepala HOM05D006326 ORTHO05D007589 5.6e-15 84.0 63 66.7
Sed0018260 Sechium edule HOM05D006326 ORTHO05D007589 7.3e-15 83.6 64 62.5
THA.LOC104815890 Tarenaya hassleriana HOM05D006326 ORTHO05D007589 7.3e-15 83.6 63 63.5
PSO384G3095 Papaver somniferum HOM05D006326 ORTHO05D007589 9.5e-15 83.2 63 63.5
Phvul.007G233400 Phaseolus vulgaris HOM05D006326 ORTHO05D007589 9.5e-15 83.2 63 63.5
VMungo0720G1800 Vigna mungo HOM05D006326 ORTHO05D007589 9.5e-15 83.2 63 63.5
BcaC07g40122 Brassica carinata HOM05D006326 ORTHO05D007589 1.2e-14 82.8 63 63.5
Aa31LG10G11560 Aethionema arabicum HOM05D006326 ORTHO05D007589 1.6e-14 82.4 79 54.4
Duzib128G1973 Durio zibethinus HOM05D006326 ORTHO05D007589 2.1e-14 82.0 65 64.6
Prupe.7G034100 Prunus persica HOM05D006326 ORTHO05D007589 2.1e-14 82.0 66 65.2
COL.COLO4_37458 Corchorus olitorius HOM05D006326 ORTHO05D007589 2.8e-14 81.6 65 64.6
Haze_20235 Corylus avellana HOM05D006326 ORTHO05D007589 2.8e-14 81.6 64 67.2
Thhalv10005957m.g Eutrema salsugineum HOM05D006326 ORTHO05D007589 2.8e-14 81.6 63 63.5
Glyma.02G166100 Glycine max HOM05D006326 ORTHO05D007589 2.8e-14 81.6 63 61.9
BolC8t50813H Brassica oleracea HOM05D006326 ORTHO05D007589 3.6e-14 81.3 63 61.9
Glyma.10G102200 Glycine max HOM05D006326 ORTHO05D007589 3.6e-14 81.3 64 60.9
MD14G1089900 Malus domestica HOM05D006326 ORTHO05D007589 3.6e-14 81.3 58 69.0
Ah.13g076820 Amaranthus hybridus HOM05D002003 ORTHO05D002037 4.7e-14 80.9 63 61.9
ATR0317G072 Amborella trichopoda HOM05D006326 ORTHO05D007589 4.7e-14 80.9 63 61.9
BcaC07g39981 Brassica carinata HOM05D006326 ORTHO05D007589 4.7e-14 80.9 63 61.9
A09p49570 Brassica napus HOM05D006326 ORTHO05D007589 4.7e-14 80.9 63 61.9
C08p31960 Brassica napus HOM05D004518 ORTHO05D005434 4.7e-14 80.9 63 61.9
BraA09t40410Z Brassica rapa HOM05D006326 ORTHO05D007589 4.7e-14 80.9 63 61.9
Lj5g0016845 Lotus japonicus HOM05D006326 ORTHO05D007589 4.7e-14 80.9 63 61.9
PSO339G2802 Papaver somniferum HOM05D006326 ORTHO05D007589 4.7e-14 80.9 63 61.9
Gohir.A09G118300 Gossypium hirsutum HOM05D006326 ORTHO05D007589 6.2e-14 80.5 65 64.6
Gohir.D09G115200 Gossypium hirsutum HOM05D006326 ORTHO05D007589 6.2e-14 80.5 65 64.6
Gorai.006G132800 Gossypium raimondii HOM05D006326 ORTHO05D007589 6.2e-14 80.5 65 64.6
SGA_v2.0_scaffold69G23160 Striga asiatica HOM05D006326 ORTHO05D007589 6.2e-14 80.5 63 61.9
Thecc.05G128800 Theobroma cacao HOM05D006326 ORTHO05D007589 6.2e-14 80.5 65 64.6
Nitab4.5_0000237g0060 Nicotiana tabacum HOM05D006326 ORTHO05D007589 8.1e-14 80.1 63 63.5
CARHR166860 Cardamine hirsuta HOM05D006326 ORTHO05D007589 1.4e-13 79.3 63 60.3
unitig_60.g25479 Utricularia gibba HOM05D006326 ORTHO05D007589 1.4e-13 79.3 63 61.9
HanXRQChr15g0491141 Helianthus annuus HOM05D006326 ORTHO05D007589 1.8e-13 79.0 64 62.5
SGA_v2.0_scaffold66G22355 Striga asiatica HOM05D006326 ORTHO05D007589 1.8e-13 79.0 63 60.3
TWI74G0746 Tripterygium wilfordii HOM05D006326 ORTHO05D007589 2.4e-13 78.6 63 60.3
CiPaw.09G048500 Carya illinoinensis HOM05D006326 ORTHO05D007589 3.1e-13 78.2 64 64.1
Ciclev10011438m.g Citrus clementina HOM05D006326 ORTHO05D007589 3.1e-13 78.2 63 61.9
Lalb_Chr02g0156611 Lupinus albus HOM05D006326 ORTHO05D007589 3.1e-13 78.2 63 60.3
Peaxi162Scf00076g00325 Petunia axillaris HOM05D006326 ORTHO05D007589 3.1e-13 78.2 64 60.9
Potri.006G039900 Populus trichocarpa HOM05D006326 ORTHO05D007589 3.1e-13 78.2 63 58.7
Sabra06G0026900 Salix brachista HOM05D006326 ORTHO05D007589 3.1e-13 78.2 63 58.7
SabraUnG0002500 Salix brachista HOM05D006326 ORTHO05D007589 3.1e-13 78.2 63 58.7
Nitab4.5_0002982g0070 Nicotiana tabacum HOM05D006326 ORTHO05D007589 4.0e-13 77.8 63 61.9
Cc06_g19610 Coffea canephora HOM05D006326 ORTHO05D007589 6.8e-13 77.0 63 57.1
RcHm_v2.0_Chr6g0276151 Rosa chinensis HOM05D006326 ORTHO05D007589 6.8e-13 77.0 66 62.1
Sc13g0001090 Simmondsia chinensis HOM05D006326 ORTHO05D007589 6.8e-13 77.0 63 60.3
unitig_0.g603 Utricularia gibba HOM05D006326 ORTHO05D007589 8.9e-13 76.6 64 62.5
CDE04G2458 Ceratophyllum demersum HOM05D006326 ORTHO05D007589 1.5e-12 75.9 63 57.1
FvH4_2g14070 Fragaria vesca HOM05D006326 ORTHO05D007589 1.5e-12 75.9 66 60.6
FAN15G3215 Fragaria x ananassa HOM05D006326 ORTHO05D007589 1.5e-12 75.9 66 60.6
FAN20G2839 Fragaria x ananassa HOM05D006326 ORTHO05D007589 1.5e-12 75.9 66 60.6
FAN24G3485 Fragaria x ananassa HOM05D006326 ORTHO05D007589 1.5e-12 75.9 66 60.6
Potri.016G036000 Populus trichocarpa HOM05D006326 ORTHO05D007589 1.5e-12 75.9 63 58.7
QL07p011201 Quercus lobata HOM05D006326 ORTHO05D007589 1.5e-12 75.9 66 60.6
Solyc12g020000.3 Solanum lycopersicum HOM05D006326 ORTHO05D007589 1.5e-12 75.9 63 60.3
Sopen12g010520 Solanum pennellii HOM05D006326 ORTHO05D007589 1.5e-12 75.9 63 60.3
SGA_v2.0_scaffold1000G53781 Striga asiatica HOM05D006326 ORTHO05D007589 1.5e-12 75.9 63 58.7
TWI53G1954 Tripterygium wilfordii HOM05D006326 ORTHO05D007589 2.0e-12 75.5 63 58.7
Carub.0005s2347 Capsella rubella HOM05D006326 ORTHO05D007589 2.6e-12 75.1 65 58.5
Hund19089 Selenicereus undatus HOM05D006326 ORTHO05D007589 2.6e-12 75.1 63 57.1
AL5G38090 Arabidopsis lyrata HOM05D006326 ORTHO05D007589 4.4e-12 74.3 65 58.5
HPP92_019182 Vanilla planifolia HOM05D006326 ORTHO05D007589 4.4e-12 74.3 63 57.1
Sp5g05840 Schrenkiella parvula HOM05D006326 ORTHO05D007589 7.6e-12 73.6 63 57.1
DCAR_013645 Daucus carota HOM05D002003 ORTHO05D002037 1.3e-11 72.8 63 57.1
Ca_05361_v3 Cicer arietinum L. HOM05D006326 ORTHO05D007589 2.2e-11 72.0 63 58.7
TPR.G7607 Trifolium pratense HOM05D006326 ORTHO05D007589 2.2e-11 72.0 63 58.7
Psat6g129480 Pisum sativum HOM05D006326 ORTHO05D007589 2.9e-11 71.6 63 58.7
Eucgr.B03116 Eucalyptus grandis HOM05D006326 ORTHO05D007589 1.4e-10 69.3 59 54.2
Medtr1g050510 Medicago truncatula HOM05D006326 ORTHO05D007589 1.9e-10 68.9 63 57.1
EL10Ac3g07247 Beta vulgaris HOM05D006326 ORTHO05D007589 2.4e-10 68.6 63 54.0
Pp3c14_4840 Physcomitrium patens HOM05D006326 ORTHO05D007589 7.1e-10 67.0 63 52.4
Pp3c1_21670 Physcomitrium patens HOM05D006326 ORTHO05D007589 7.1e-10 67.0 63 54.0
Zm00001eb185630 Zea mays HOM05D006326 ORTHO05D007589 9.2e-10 66.6 60 60.0
Mapoly0069s0088 Marchantia polymorpha HOM05D006326 ORTHO05D007589 7.8e-09 63.5 63 52.4
AagrBONN_evm.TU.Sc2ySwM_344.979 Anthoceros agrestis HOM05D006326 ORTHO05D007589 5.1e-08 60.8 63 49.2
SMO351G0508 Selaginella moellendorffii HOM05D006326 ORTHO05D007589 5.1e-08 60.8 63 47.6
arahy.Tifrunner.gnm1.ann1.0NJ1V1 Arachis hypogaea HOM05D006326 ORTHO05D007589 3.3e-07 58.2 63 49.2
arahy.Tifrunner.gnm1.ann1.Z1KKER Arachis hypogaea HOM05D006326 ORTHO05D007589 3.3e-07 58.2 63 49.2
SEGI_11590 Sequoiadendron giganteum HOM05D006326 ORTHO05D007589 7.3e-07 57.0 63 49.2
CAN.G51.3 Capsicum annuum HOM05D006326 ORTHO05D007589 2.8e-06 55.1 63 47.6


User provided reference genes

Program Settings