Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022358 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 1.5e-43 179.1 89 100.0
CSS0047032 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 7.2e-38 160.2 89 89.9
Dinv33336 Davidia involucrata HOM05D006526 ORTHO05D008496 1.3e-18 96.3 76 64.5
Actinidia05903 Actinidia chinensis HOM05D006526 ORTHO05D008496 1.8e-17 92.4 54 77.8
Rhsim10G0006300 Rhododendron simsii HOM05D006526 ORTHO05D008496 7.0e-17 90.5 48 87.5
vmacro05958 Vaccinium macrocarpon HOM05D006526 ORTHO05D008496 7.0e-17 90.5 75 60.0
Actinidia36203 Actinidia chinensis HOM05D006526 ORTHO05D008496 3.5e-16 88.2 68 66.2
PGSC0003DMG400020254 Solanum tuberosum HOM05D006526 ORTHO05D008496 4.5e-16 87.8 74 63.5
Hma1.2p1_1278F.1_g272280 Hydrangea macrophylla HOM05D006526 ORTHO05D008496 5.9e-16 87.4 77 59.7
Solyc02g094150.4 Solanum lycopersicum HOM05D006526 ORTHO05D008496 7.7e-16 87.0 74 63.5
Sopen02g038780 Solanum pennellii HOM05D006526 ORTHO05D008496 7.7e-16 87.0 74 63.5
Peaxi162Scf00420g00560 Petunia axillaris HOM05D006526 ORTHO05D008496 2.3e-15 85.5 52 80.8
GSVIVG01033093001 Vitis vinifera HOM05D006526 ORTHO05D008496 2.3e-15 85.5 75 57.3
Cc07_g00840 Coffea canephora HOM05D006526 ORTHO05D008496 5.0e-15 84.3 79 55.7
CAN.G473.100 Capsicum annuum HOM05D006526 ORTHO05D008496 8.6e-15 83.6 74 60.8
Oeu005097.1 Olea europaea HOM05D006526 ORTHO05D008496 1.5e-14 82.8 75 53.3
Eucgr.J02351 Eucalyptus grandis HOM05D006526 ORTHO05D008496 3.3e-14 81.6 54 68.5
COL.COLO4_13261 Corchorus olitorius HOM05D006526 ORTHO05D008496 4.2e-14 81.3 73 56.2
Lju41C52G13 Lonicera japonica HOM05D002875 ORTHO05D003215 4.2e-14 81.3 54 72.2
Potri.001G330100 Populus trichocarpa HOM05D006526 ORTHO05D008496 5.5e-14 80.9 76 55.3
Nitab4.5_0002050g0140 Nicotiana tabacum HOM05D006526 ORTHO05D008496 7.2e-14 80.5 49 79.6
TWI56G1218 Tripterygium wilfordii HOM05D006526 ORTHO05D008496 9.5e-14 80.1 75 53.3
Manes.15G161000 Manihot esculenta HOM05D006526 ORTHO05D008496 1.6e-13 79.3 73 56.2
Hund04346 Selenicereus undatus HOM05D006526 ORTHO05D008496 2.1e-13 79.0 80 48.8
SGA_v2.0_scaffold47G17596 Striga asiatica HOM05D006526 ORTHO05D008496 2.8e-13 78.6 75 54.7
DCAR_000965 Daucus carota HOM05D006526 ORTHO05D008496 3.6e-13 78.2 73 54.8
Sabra16G0211400 Salix brachista HOM05D006526 ORTHO05D008496 3.6e-13 78.2 76 53.9
Duzib147G1379 Durio zibethinus HOM05D006526 ORTHO05D008496 4.7e-13 77.8 54 66.7
PGR042G1209 Punica granatum HOM05D006526 ORTHO05D008496 4.7e-13 77.8 54 64.8
Thecc.04G036000 Theobroma cacao HOM05D006526 ORTHO05D008496 4.7e-13 77.8 54 66.7
SalBow7G1947 Salvia bowleyana HOM05D006526 ORTHO05D008496 6.1e-13 77.4 72 54.2
AUR62003516 Chenopodium quinoa HOM05D006526 ORTHO05D008496 8.0e-13 77.0 65 55.4
Nn4g22325 Nelumbo nucifera HOM05D006526 ORTHO05D008496 8.0e-13 77.0 54 66.7
AUR62017828 Chenopodium quinoa HOM05D006526 ORTHO05D008496 1.4e-12 76.3 65 53.8
Os08g0531300 Oryza sativa ssp. japonica HOM05D006526 ORTHO05D008496 1.4e-12 76.3 78 51.3
Migut.K01466 Erythranthe guttata HOM05D006526 ORTHO05D008496 1.8e-12 75.9 69 55.1
QL02p071425 Quercus lobata HOM05D006526 ORTHO05D008496 1.8e-12 75.9 77 54.5
PSO017G5829 Papaver somniferum HOM05D006526 ORTHO05D008496 3.0e-12 75.1 49 69.4
BcaB05g22967 Brassica carinata HOM05D006526 ORTHO05D008496 4.0e-12 74.7 53 60.4
Ciclev10015967m.g Citrus clementina HOM05D006526 ORTHO05D008496 4.0e-12 74.7 76 51.3
arahy.Tifrunner.gnm1.ann1.4N5YWB Arachis hypogaea HOM05D006526 ORTHO05D008496 5.2e-12 74.3 75 50.7
arahy.Tifrunner.gnm1.ann1.C96CVE Arachis hypogaea HOM05D006526 ORTHO05D008496 5.2e-12 74.3 75 50.7
Gohir.D09G036900 Gossypium hirsutum HOM05D006526 ORTHO05D008496 5.2e-12 74.3 54 64.8
Gorai.006G042000 Gossypium raimondii HOM05D006526 ORTHO05D008496 5.2e-12 74.3 54 64.8
Gohir.A09G035700 Gossypium hirsutum HOM05D006526 ORTHO05D008496 6.8e-12 73.9 54 63.0
unitig_88.g27695 Utricularia gibba HOM05D006526 ORTHO05D008496 6.8e-12 73.9 49 69.4
CARHR075020 Cardamine hirsuta HOM05D006526 ORTHO05D008496 8.9e-12 73.6 53 64.2
Cpa.g.sc171.15 Carica papaya HOM05D006526 ORTHO05D008496 8.9e-12 73.6 50 60.0
AT3G01920 Arabidopsis thaliana HOM05D006526 ORTHO05D008496 1.2e-11 73.2 48 64.6
CiPaw.03G055600 Carya illinoinensis HOM05D006526 ORTHO05D008496 1.2e-11 73.2 77 51.9
CDE05G3548 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 1.2e-11 73.2 67 55.2
PSO478G2106 Papaver somniferum HOM05D006526 ORTHO05D008496 1.5e-11 72.8 49 67.3
RcHm_v2.0_Chr2g0175561 Rosa chinensis HOM05D006526 ORTHO05D008496 2.0e-11 72.4 53 66.0
Ah.03g147500 Amaranthus hybridus HOM05D006526 ORTHO05D008496 2.6e-11 72.0 46 67.4
BcaB05g22970 Brassica carinata HOM05D006526 ORTHO05D008496 2.6e-11 72.0 53 58.5
CANSAT64G1234 Cannabis sativa HOM05D006526 ORTHO05D008496 2.6e-11 72.0 77 50.6
CsaV3_3G027000 Cucumis sativus L. HOM05D006526 ORTHO05D008496 2.6e-11 72.0 75 50.7
ATR0561G126 Amborella trichopoda HOM05D006526 ORTHO05D008496 3.4e-11 71.6 67 52.2
MSTRG.3258 Avicennia marina HOM05D006526 ORTHO05D008496 3.4e-11 71.6 47 70.2
Lsat_1_v5_gn_2_93080 Lactuca sativa HOM05D006526 ORTHO05D008496 3.4e-11 71.6 53 67.9
BcaC09g49919 Brassica carinata HOM05D006526 ORTHO05D008496 4.4e-11 71.2 53 54.7
A01p25030 Brassica napus HOM05D006526 ORTHO05D008496 4.4e-11 71.2 53 54.7
C01p31260 Brassica napus HOM05D006526 ORTHO05D008496 4.4e-11 71.2 53 54.7
BolC1t03065H Brassica oleracea HOM05D006526 ORTHO05D008496 4.4e-11 71.2 53 54.7
BraA01t02414Z Brassica rapa HOM05D006526 ORTHO05D008496 4.4e-11 71.2 53 54.7
CDE05G2481 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 4.4e-11 71.2 70 50.0
MELO3C014888.2 Cucumis melo HOM05D006526 ORTHO05D008496 4.4e-11 71.2 75 50.7
Atru.chr6.2570 Acer truncatum HOM05D006526 ORTHO05D008496 5.7e-11 70.9 75 53.3
FAN09G0514 Fragaria x ananassa HOM05D002875 ORTHO05D003215 5.7e-11 70.9 58 62.1
Sp3g00170 Schrenkiella parvula HOM05D006526 ORTHO05D008496 7.5e-11 70.5 72 44.4
Aa31LG5G11040 Aethionema arabicum HOM05D006526 ORTHO05D008496 9.8e-11 70.1 52 55.8
Haze_14876 Corylus avellana HOM05D006526 ORTHO05D008496 9.8e-11 70.1 53 66.0
MD09G1010800 Malus domestica HOM05D006526 ORTHO05D008496 9.8e-11 70.1 49 67.3
AL3G10210 Arabidopsis lyrata HOM05D006526 ORTHO05D008496 1.3e-10 69.7 45 66.7
Prupe.3G306300 Prunus persica HOM05D006526 ORTHO05D008496 1.3e-10 69.7 63 58.7
TPR.G14866 Trifolium pratense HOM05D006526 ORTHO05D008496 1.3e-10 69.7 84 44.0
ClCG05G013530 Citrullus lanatus HOM05D006526 ORTHO05D008496 1.7e-10 69.3 72 51.4
Lalb_Chr14g0363401 Lupinus albus HOM05D006526 ORTHO05D008496 1.7e-10 69.3 73 49.3
THA.LOC104821121 Tarenaya hassleriana HOM05D006526 ORTHO05D008496 1.7e-10 69.3 71 47.9
Aqoxy3G01551 Aquilegia oxysepala HOM05D006526 ORTHO05D008496 2.2e-10 68.9 49 65.3
ECA238G1207 Erigeron canadensis HOM05D006526 ORTHO05D008496 2.2e-10 68.9 54 68.5
FvH4_6g53521 Fragaria vesca HOM05D006526 ORTHO05D008496 2.2e-10 68.9 54 64.8
Sed0022734 Sechium edule HOM05D006526 ORTHO05D008496 2.2e-10 68.9 71 49.3
Zm00001eb175140 Zea mays HOM05D006526 ORTHO05D008496 4.9e-10 67.8 52 57.7
Cfa007227 Carpinus fangiana HOM05D006526 ORTHO05D008496 8.3e-10 67.0 53 64.2
Thhalv10000573m.g Eutrema salsugineum HOM05D006526 ORTHO05D008496 1.1e-09 66.6 47 66.0
Glyma.19G091200 Glycine max HOM05D006526 ORTHO05D008496 1.4e-09 66.2 53 58.5
Psat3g163920 Pisum sativum HOM05D006526 ORTHO05D008496 2.4e-09 65.5 53 56.6
HanXRQChr14g0450751 Helianthus annuus HOM05D006526 ORTHO05D008496 3.1e-09 65.1 54 64.8
Carub.0003s0016 Capsella rubella HOM05D006526 ORTHO05D008496 5.4e-09 64.3 43 62.8
Lj1g0010270 Lotus japonicus HOM05D006526 ORTHO05D008496 5.4e-09 64.3 58 53.4
Phvul.001G093500 Phaseolus vulgaris HOM05D006526 ORTHO05D008496 7.0e-09 63.9 53 54.7
Glyma.16G056450 Glycine max HOM05D006526 ORTHO05D008496 4.5e-08 61.2 56 55.4
SMO137G0097 Selaginella moellendorffii HOM05D006526 ORTHO05D008496 8.6e-07 57.0 46 50.0
AagrBONN_evm.TU.Sc2ySwM_228.1921 Anthoceros agrestis HOM05D006526 ORTHO05D008496 1.1e-06 56.6 55 50.9
Pp3c2_22020 Physcomitrium patens HOM05D006526 ORTHO05D008496 1.5e-06 56.2 51 54.9
CDE06G2358 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 1.9e-06 55.8 33 75.8
FAN02G2201 Fragaria x ananassa HOM05D002323 ORTHO05D002470 5.6e-06 54.3 40 65.0
MBI11_g23476_MAGBIO Magnolia biondii HOM05D006526 ORTHO05D008496 5.6e-06 54.3 35 68.6
Nitab4.5_0010204g0040 Nicotiana tabacum HOM05D006526 ORTHO05D008496 9.5e-06 53.5 32 78.1


User provided reference genes

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