Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022344 Camellia sinensis var. sinensis HOM05D000033 ORTHO05D004097 6.1e-61 237.3 117 100.0
CSS0012143 Camellia sinensis var. sinensis HOM05D000033 ORTHO05D004097 3.4e-35 151.8 75 97.3
Hma1.2p1_0967F.1_g242310 Hydrangea macrophylla HOM05D000033 ORTHO05D004097 1.1e-22 110.2 92 56.5
Nitab4.5_0000015g0030 Nicotiana tabacum HOM05D000033 ORTHO05D004097 2.8e-21 105.5 100 54.0
Actinidia36073 Actinidia chinensis HOM05D000033 ORTHO05D004097 4.7e-21 104.8 86 58.1
Hma1.2p1_0697F.1_g204820 Hydrangea macrophylla HOM05D000033 ORTHO05D004097 3.1e-20 102.1 85 54.1
Dinv35042 Davidia involucrata HOM05D000033 ORTHO05D004097 6.8e-20 100.9 83 54.2
Peaxi162Scf00429g00013 Petunia axillaris HOM05D000033 ORTHO05D004097 6.8e-20 100.9 92 56.5
Lj7A589T62 Lonicera japonica HOM05D000033 ORTHO05D004097 3.4e-19 98.6 80 51.2
Actinidia33965 Actinidia chinensis HOM05D000033 ORTHO05D004097 7.5e-19 97.4 86 52.3
Dinv33510 Davidia involucrata HOM05D000033 ORTHO05D004097 7.5e-19 97.4 82 54.9
CAN.G742.35 Capsicum annuum HOM05D000033 ORTHO05D004097 9.8e-19 97.1 94 54.3
Nitab4.5_0004762g0060 Nicotiana tabacum HOM05D000033 ORTHO05D004097 1.7e-18 96.3 100 51.0
CSS0032933 Camellia sinensis var. sinensis HOM05D000033 ORTHO05D004097 3.7e-18 95.1 78 56.4
PGSC0003DMG400003002 Solanum tuberosum HOM05D000033 ORTHO05D004097 8.3e-18 94.0 93 54.8
Lju41A33T80 Lonicera japonica HOM05D000033 ORTHO05D004097 1.4e-17 93.2 85 49.4
Solyc11g071880.3 Solanum lycopersicum HOM05D000033 ORTHO05D004097 1.4e-17 93.2 93 54.8
Sopen11g029550 Solanum pennellii HOM05D000033 ORTHO05D004097 2.4e-17 92.4 93 54.8
Lsat_1_v5_gn_0_5781 Lactuca sativa HOM05D000033 ORTHO05D004097 7.0e-17 90.9 83 47.0
Cc07_g02440 Coffea canephora HOM05D000033 ORTHO05D004097 3.5e-16 88.6 83 53.0
SalBow1G4833 Salvia bowleyana HOM05D000033 ORTHO05D004097 4.6e-16 88.2 82 51.2
Ca_00659_v3 Cicer arietinum L. HOM05D000033 ORTHO05D004097 3.0e-15 85.5 78 47.4
Ca_00703_v3 Cicer arietinum L. HOM05D000033 ORTHO05D004097 3.0e-15 85.5 78 47.4
HanXRQChr15g0474511 Helianthus annuus HOM05D000033 ORTHO05D004097 3.9e-15 85.1 77 48.1
Oeu017426.1 Olea europaea HOM05D000033 ORTHO05D004097 3.9e-15 85.1 83 49.4
Prupe.3G281400 Prunus persica HOM05D000033 ORTHO05D004097 3.9e-15 85.1 75 53.3
Rhsim08G0169800 Rhododendron simsii HOM05D000033 ORTHO05D004097 3.9e-15 85.1 78 52.6
ECA246G2594 Erigeron canadensis HOM05D000033 ORTHO05D004097 5.1e-15 84.7 86 46.5
TWI12G0450 Tripterygium wilfordii HOM05D000033 ORTHO05D004097 6.6e-15 84.3 75 50.7
Lj1g0003826 Lotus japonicus HOM05D000033 ORTHO05D004097 8.6e-15 84.0 73 50.7
Aqoxy3G00952 Aquilegia oxysepala HOM05D000033 ORTHO05D004097 1.5e-14 83.2 83 49.4
Cpa.g.sc140.36 Carica papaya HOM05D000033 ORTHO05D004097 1.9e-14 82.8 83 49.4
Duzib147G1383 Durio zibethinus HOM05D000033 ORTHO05D004097 1.9e-14 82.8 87 47.1
COL.COLO4_34070 Corchorus olitorius HOM05D000033 ORTHO05D004097 3.3e-14 82.0 86 46.5
Thecc.04G006400 Theobroma cacao HOM05D000033 ORTHO05D004097 4.3e-14 81.6 86 48.8
Psat1g180880 Pisum sativum HOM05D000033 ORTHO05D004097 1.2e-13 80.1 74 47.3
DCAR_021673 Daucus carota HOM05D000033 ORTHO05D004097 1.6e-13 79.7 87 47.1
CANSAT80G2692 Cannabis sativa HOM05D000033 ORTHO05D004097 2.1e-13 79.3 77 50.6
TAR629G0652 Trochodendron aralioides HOM05D000033 ORTHO05D004097 3.6e-13 78.6 82 47.6
TPR.G9931 Trifolium pratense HOM05D000033 ORTHO05D004097 4.7e-13 78.2 76 44.7
Haze_14651 Corylus avellana HOM05D000033 ORTHO05D004097 8.1e-13 77.4 77 48.1
Eucgr.K02865 Eucalyptus grandis HOM05D000033 ORTHO05D004097 8.1e-13 77.4 81 49.4
Phvul.008G152500 Phaseolus vulgaris HOM05D000033 ORTHO05D004097 8.1e-13 77.4 73 45.2
Duzib205G1293 Durio zibethinus HOM05D000033 ORTHO05D004097 1.8e-12 76.3 77 49.4
Migut.D01777 Erythranthe guttata HOM05D000033 ORTHO05D004097 1.8e-12 76.3 76 46.1
arahy.Tifrunner.gnm1.ann1.VU7K38 Arachis hypogaea HOM05D000033 ORTHO05D004097 2.3e-12 75.9 76 46.1
arahy.Tifrunner.gnm1.ann1.X13C0W Arachis hypogaea HOM05D000033 ORTHO05D004097 2.3e-12 75.9 73 47.9
Oeu014507.1 Olea europaea HOM05D000033 ORTHO05D004097 2.3e-12 75.9 78 46.2
Gohir.D09G166300 Gossypium hirsutum HOM05D000033 ORTHO05D004097 3.1e-12 75.5 86 44.2
Gorai.006G188100 Gossypium raimondii HOM05D000033 ORTHO05D004097 3.1e-12 75.5 86 44.2
Sed0002690 Sechium edule HOM05D000033 ORTHO05D004097 3.1e-12 75.5 79 40.5
Atru.chr6.2181 Acer truncatum HOM05D000033 ORTHO05D004097 5.2e-12 74.7 72 50.0
Hma1.2p1_2497F.1_g323350 Hydrangea macrophylla HOM05D000033 ORTHO05D004097 5.2e-12 74.7 77 46.8
VMungo1383G3100 Vigna mungo HOM05D000033 ORTHO05D004097 5.2e-12 74.7 73 46.6
GSVIVG01007793001 Vitis vinifera HOM05D000086 ORTHO05D004097 6.8e-12 74.3 78 44.9
Glyma.11G176301 Glycine max HOM05D000033 ORTHO05D004097 1.2e-11 73.6 74 43.2
Eucgr.J02180 Eucalyptus grandis HOM05D000033 ORTHO05D004097 1.5e-11 73.2 71 49.3
FAN09G2034 Fragaria x ananassa HOM05D000033 ORTHO05D004097 1.5e-11 73.2 77 46.8
Hma1.2p1_0176F.1_g077740 Hydrangea macrophylla HOM05D000033 ORTHO05D004097 2.6e-11 72.4 80 43.8
Aqoxy3G03048 Aquilegia oxysepala HOM05D000033 ORTHO05D004097 3.4e-11 72.0 80 45.0
ClCG09G018800 Citrullus lanatus HOM05D000033 ORTHO05D004097 3.4e-11 72.0 79 39.2
Ciclev10024093m.g Citrus clementina HOM05D000086 ORTHO05D004097 3.4e-11 72.0 80 41.2
Gohir.A09G170600 Gossypium hirsutum HOM05D000033 ORTHO05D004097 3.4e-11 72.0 85 42.4
Lj5A122T97 Lonicera japonica HOM05D000033 ORTHO05D004097 3.4e-11 72.0 79 44.3
Atru.chr6.2179 Acer truncatum HOM05D000033 ORTHO05D004097 4.4e-11 71.6 74 50.0
Aqoxy3G03047 Aquilegia oxysepala HOM05D000033 ORTHO05D004097 4.4e-11 71.6 80 45.0
CSS0006799 Camellia sinensis var. sinensis HOM05D000033 ORTHO05D004097 4.4e-11 71.6 77 44.2
Gohir.D07G066500 Gossypium hirsutum HOM05D000033 ORTHO05D004097 4.4e-11 71.6 82 42.7
MD17G1037900 Malus domestica HOM05D000033 ORTHO05D004097 4.4e-11 71.6 79 40.5
Atru.chr9.2431 Acer truncatum HOM05D000033 ORTHO05D004097 5.8e-11 71.2 78 43.6
Gohir.A07G061800 Gossypium hirsutum HOM05D000033 ORTHO05D004097 5.8e-11 71.2 82 42.7
MBI15_g19750_MAGBIO Magnolia biondii HOM05D000033 ORTHO05D004097 5.8e-11 71.2 76 44.7
Gorai.001G070200 Gossypium raimondii HOM05D000033 ORTHO05D004097 7.5e-11 70.9 82 42.7
MD09G1036300 Malus domestica HOM05D000033 ORTHO05D004097 7.5e-11 70.9 75 44.0
FAN05G2186 Fragaria x ananassa HOM05D000033 ORTHO05D004097 9.9e-11 70.5 77 44.2
Actinidia04978 Actinidia chinensis HOM05D000033 ORTHO05D004097 1.3e-10 70.1 78 43.6
FAN02G0964 Fragaria x ananassa HOM05D000033 ORTHO05D004097 1.3e-10 70.1 77 44.2
FAN05G3545 Fragaria x ananassa HOM05D000033 ORTHO05D004097 1.3e-10 70.1 77 44.2
FvH4_6g50440 Fragaria vesca HOM05D000033 ORTHO05D004097 1.7e-10 69.7 77 44.2
FAN14G0425 Fragaria x ananassa HOM05D000033 ORTHO05D004097 1.7e-10 69.7 77 44.2
CiPaw.03G036100 Carya illinoinensis HOM05D000033 ORTHO05D004097 2.2e-10 69.3 77 40.3
DCAR_031304 Daucus carota HOM05D000033 ORTHO05D004097 2.2e-10 69.3 79 45.6
Solyc03g114080.2 Solanum lycopersicum HOM05D000033 ORTHO05D004097 2.2e-10 69.3 82 42.7
Ca_16201_v3 Cicer arietinum L. HOM05D000033 ORTHO05D004097 2.9e-10 68.9 86 45.3
Lj1g0022926 Lotus japonicus HOM05D000033 ORTHO05D004097 2.9e-10 68.9 82 45.1
Manes.14G068200 Manihot esculenta HOM05D000033 ORTHO05D004097 2.9e-10 68.9 70 48.6
Manes.16G004600 Manihot esculenta HOM05D000033 ORTHO05D004097 2.9e-10 68.9 72 47.2
MD14G1184300 Malus domestica HOM05D000033 ORTHO05D004097 3.7e-10 68.6 82 42.7
Prupe.5G176900 Prunus persica HOM05D000033 ORTHO05D004097 3.7e-10 68.6 82 45.1
Rhsim12G0162900 Rhododendron simsii HOM05D000033 ORTHO05D004097 3.7e-10 68.6 76 48.7
Eucgr.B00352 Eucalyptus grandis HOM05D000033 ORTHO05D004097 4.9e-10 68.2 78 42.3
MBI14_g41304_MAGBIO Magnolia biondii HOM05D000033 ORTHO05D004097 4.9e-10 68.2 77 41.6
RcHm_v2.0_Chr2g0170861 Rosa chinensis HOM05D000033 ORTHO05D004097 4.9e-10 68.2 73 43.8
PGSC0003DMG400024485 Solanum tuberosum HOM05D000033 ORTHO05D004097 4.9e-10 68.2 83 42.2
MD00G1171500 Malus domestica HOM05D000033 ORTHO05D004097 6.4e-10 67.8 83 43.4
MD06G1177700 Malus domestica HOM05D000033 ORTHO05D004097 6.4e-10 67.8 83 43.4
Dinv20680 Davidia involucrata HOM05D000033 ORTHO05D004097 8.3e-10 67.4 78 43.6
Atru.chr9.2432 Acer truncatum HOM05D000033 ORTHO05D004097 1.1e-09 67.0 71 42.3
Duzib084G0673 Durio zibethinus HOM05D000033 ORTHO05D004097 1.1e-09 67.0 73 45.2
Lj9C451T13 Lonicera japonica HOM05D000033 ORTHO05D004097 1.4e-09 66.6 79 45.6
Sopen03g033140 Solanum pennellii HOM05D000033 ORTHO05D004097 1.4e-09 66.6 82 41.5
Atru.chr9.2409 Acer truncatum HOM05D000033 ORTHO05D004097 1.9e-09 66.2 62 50.0
QL10p013606 Quercus lobata HOM05D000033 ORTHO05D004097 1.9e-09 66.2 76 46.1
CANSAT64G1796 Cannabis sativa HOM05D000033 ORTHO05D004097 3.2e-09 65.5 78 41.0
DCAR_016494 Daucus carota HOM05D000033 ORTHO05D004097 3.2e-09 65.5 79 40.5
HanXRQChr02g0037171 Helianthus annuus HOM05D000033 ORTHO05D004097 3.2e-09 65.5 81 38.3
TAR374G0626 Trochodendron aralioides HOM05D000033 ORTHO05D004097 3.2e-09 65.5 70 47.1
Lsat_1_v5_gn_4_73000 Lactuca sativa HOM05D000033 ORTHO05D004097 4.1e-09 65.1 81 42.0
Lsat_1_v5_gn_1_26480 Lactuca sativa HOM05D000033 ORTHO05D004097 5.4e-09 64.7 82 40.2
Phvul.009G180700 Phaseolus vulgaris HOM05D000033 ORTHO05D004097 9.2e-09 63.9 78 42.3
Psat5g113400 Pisum sativum HOM05D000033 ORTHO05D004097 9.2e-09 63.9 80 43.8
Nitab4.5_0001422g0040 Nicotiana tabacum HOM05D000033 ORTHO05D004097 1.2e-08 63.5 83 39.8
Sabra12G0055900 Salix brachista HOM05D000033 ORTHO05D004097 1.2e-08 63.5 82 40.2
Lalb_Chr08g0236331 Lupinus albus HOM05D000033 ORTHO05D004097 2.7e-08 62.4 78 43.6
Nitab4.5_0000499g0010 Nicotiana tabacum HOM05D000033 ORTHO05D004097 2.7e-08 62.4 78 41.0
Manes.17G123500 Manihot esculenta HOM05D000033 ORTHO05D004097 3.5e-08 62.0 72 41.7
Peaxi162Scf00496g00815 Petunia axillaris HOM05D000033 ORTHO05D004097 3.5e-08 62.0 78 41.0
Potri.012G078100 Populus trichocarpa HOM05D000033 ORTHO05D004097 6.0e-08 61.2 82 39.0
Medtr3g078250 Medicago truncatula HOM05D000033 ORTHO05D004097 7.8e-08 60.8 77 42.9
PGR083G0218 Punica granatum HOM05D000033 ORTHO05D004097 7.8e-08 60.8 73 42.5
Peaxi162Scf00017g02331 Petunia axillaris HOM05D000033 ORTHO05D004097 1.7e-07 59.7 78 39.7
SalBow2G1168 Salvia bowleyana HOM05D000033 ORTHO05D004097 1.7e-07 59.7 71 42.3
HanXRQChr16g0503641 Helianthus annuus HOM05D000033 ORTHO05D004097 2.3e-07 59.3 75 38.7
PGR044G1648 Punica granatum HOM05D000033 ORTHO05D004097 2.3e-07 59.3 75 37.3
HanXRQChr09g0272331 Helianthus annuus HOM05D000033 ORTHO05D004097 5.1e-07 58.2 74 40.5
arahy.Tifrunner.gnm1.ann1.TB9JY1 Arachis hypogaea HOM05D000033 ORTHO05D004097 1.1e-06 57.0 78 41.0
arahy.Tifrunner.gnm1.ann1.TU6B9Y Arachis hypogaea HOM05D000033 ORTHO05D004097 1.1e-06 57.0 78 41.0
vmacro16597 Vaccinium macrocarpon HOM05D000033 ORTHO05D004097 1.5e-06 56.6 76 39.5
DCAR_011218 Daucus carota HOM05D000033 ORTHO05D004097 2.5e-06 55.8 50 52.0
TAR622G0894 Trochodendron aralioides HOM05D000033 ORTHO05D004097 2.5e-06 55.8 74 39.2
RcHm_v2.0_Chr7g0193991 Rosa chinensis HOM05D000033 ORTHO05D004097 3.3e-06 55.5 75 38.7
Sc14g0000490 Simmondsia chinensis HOM05D000033 ORTHO05D002890 3.3e-06 55.5 61 42.6
Nitab4.5_0004762g0070 Nicotiana tabacum HOM05D000033 ORTHO05D283850 4.3e-06 55.1 52 50.0
PSO017G0800 Papaver somniferum HOM05D000033 ORTHO05D004097 5.6e-06 54.7 75 41.3
PSO478G4550 Papaver somniferum HOM05D000033 ORTHO05D004097 5.6e-06 54.7 75 40.0
FAN08G1315 Fragaria x ananassa HOM05D000033 ORTHO05D004097 9.5e-06 53.9 74 37.8


User provided reference genes

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