Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022341 Camellia sinensis var. sinensis HOM05D001619 ORTHO05D001541 2.4e-54 215.3 112 100.0
Actinidia17072 Actinidia chinensis HOM05D001619 ORTHO05D001541 6.9e-30 134.0 98 69.4
CSS0019824 Camellia sinensis var. sinensis HOM05D001619 ORTHO05D001541 6.9e-30 134.0 111 64.9
vmacro21770 Vaccinium macrocarpon HOM05D001619 ORTHO05D001541 1.1e-27 126.7 98 68.4
Actinidia15521 Actinidia chinensis HOM05D001619 ORTHO05D001541 1.9e-27 125.9 98 66.3
Dinv31986 Davidia involucrata HOM05D001619 ORTHO05D001541 7.2e-27 124.0 98 64.3
Rhsim06G0003500 Rhododendron simsii HOM05D001619 ORTHO05D001541 1.5e-24 116.3 98 64.3
Lj4A5T44 Lonicera japonica HOM05D001619 ORTHO05D001541 1.9e-19 99.4 96 55.2
DCAR_016797 Daucus carota HOM05D001619 ORTHO05D001541 6.7e-17 90.9 102 50.0
Oeu004547.1 Olea europaea HOM05D001619 ORTHO05D001541 6.7e-17 90.9 94 53.2
Hma1.2p1_0489F.1_g164070 Hydrangea macrophylla HOM05D001619 ORTHO05D001541 1.3e-15 86.7 104 56.7
Cc10_g13010 Coffea canephora HOM05D001619 ORTHO05D001541 8.2e-15 84.0 94 51.1
CiPaw.07G133900 Carya illinoinensis HOM05D001619 ORTHO05D001541 1.4e-14 83.2 109 44.0
QL02p015706 Quercus lobata HOM05D001619 ORTHO05D001541 5.3e-14 81.3 109 44.0
Nitab4.5_0001756g0070 Nicotiana tabacum HOM05D001619 ORTHO05D025938 9.1e-14 80.5 96 46.9
Lsat_1_v5_gn_8_27500 Lactuca sativa HOM05D001619 ORTHO05D001541 2.9e-12 75.5 95 46.3
PGSC0003DMG402009997 Solanum tuberosum HOM05D001619 ORTHO05D001541 2.9e-12 75.5 96 46.9
ECA233G5749 Erigeron canadensis HOM05D001619 ORTHO05D001541 6.5e-12 74.3 82 51.2
HanXRQChr08g0216181 Helianthus annuus HOM05D001619 ORTHO05D001541 1.1e-11 73.6 95 45.3
CAN.G1330.9 Capsicum annuum HOM05D001619 ORTHO05D001541 1.5e-11 73.2 97 46.4
DCAR_013941 Daucus carota HOM05D001619 ORTHO05D001541 2.5e-11 72.4 95 42.1
SalBow6G1245 Salvia bowleyana HOM05D001619 ORTHO05D001541 7.2e-11 70.9 78 47.4
Sopen04g036370 Solanum pennellii HOM05D001619 ORTHO05D001541 1.2e-10 70.1 96 43.8
Ciclev10001358m.g Citrus clementina HOM05D001619 ORTHO05D001541 2.1e-10 69.3 60 58.3
Prupe.5G005900 Prunus persica HOM05D001619 ORTHO05D001541 2.7e-10 68.9 108 41.7
Peaxi162Scf00680g00633 Petunia axillaris HOM05D001619 ORTHO05D001541 3.6e-10 68.6 62 54.8
Solyc04g082740.4 Solanum lycopersicum HOM05D001619 ORTHO05D001541 3.6e-10 68.6 96 43.8
Atru.chr13.66 Acer truncatum HOM05D001619 ORTHO05D001541 6.1e-10 67.8 105 41.0
MD06G1004600 Malus domestica HOM05D001619 ORTHO05D001541 1.0e-09 67.0 108 39.8
Oeu049863.1 Olea europaea HOM05D001619 ORTHO05D001541 1.0e-09 67.0 53 62.3
FAN08G3113 Fragaria x ananassa HOM05D001619 ORTHO05D001541 2.3e-09 65.9 112 36.6
COL.COLO4_12314 Corchorus olitorius HOM05D001619 ORTHO05D001541 3.0e-09 65.5 62 53.2
Glyma.15G047500 Glycine max HOM05D001619 ORTHO05D001541 3.0e-09 65.5 104 39.4
Nn8g40372 Nelumbo nucifera HOM05D001619 ORTHO05D001541 3.0e-09 65.5 111 37.8
Cpa.g.sc286.13 Carica papaya HOM05D001619 ORTHO05D001541 6.8e-09 64.3 104 39.4
FvH4_5g26010 Fragaria vesca HOM05D001619 ORTHO05D001541 8.8e-09 63.9 115 36.5
Migut.C00358 Erythranthe guttata HOM05D001619 ORTHO05D001541 1.2e-08 63.5 78 44.9
SGA_v2.0_scaffold220G42650 Striga asiatica HOM05D001619 ORTHO05D001541 1.2e-08 63.5 90 41.1
TPR.G32875 Trifolium pratense HOM05D001619 ORTHO05D001541 1.2e-08 63.5 58 58.6
Ca_01803_v3 Cicer arietinum L. HOM05D001619 ORTHO05D001541 2.0e-08 62.8 58 56.9
Ca_30470_v3 Cicer arietinum L. HOM05D001619 ORTHO05D001541 2.0e-08 62.8 58 56.9
Psat5g246760 Pisum sativum HOM05D001619 ORTHO05D001541 2.6e-08 62.4 100 42.0
Glyma.08G185200 Glycine max HOM05D001619 ORTHO05D001541 3.4e-08 62.0 104 38.5
arahy.Tifrunner.gnm1.ann1.X04J1J Arachis hypogaea HOM05D001619 ORTHO05D001541 5.7e-08 61.2 58 53.4
Nn2g12623 Nelumbo nucifera HOM05D001619 ORTHO05D001541 5.7e-08 61.2 60 51.7
arahy.Tifrunner.gnm1.ann1.7DN31D Arachis hypogaea HOM05D001619 ORTHO05D001541 1.3e-07 60.1 58 53.4
TAR381G0513 Trochodendron aralioides HOM05D001619 ORTHO05D001541 1.3e-07 60.1 72 45.8
FAN04G3031 Fragaria x ananassa HOM05D001619 ORTHO05D001541 2.2e-07 59.3 115 35.7
RcHm_v2.0_Chr7g0216621 Rosa chinensis HOM05D001619 ORTHO05D001541 3.7e-07 58.5 117 38.5
Medtr2g081050 Medicago truncatula HOM05D001619 ORTHO05D001541 4.8e-07 58.2 106 40.6
FAN13G2253 Fragaria x ananassa HOM05D001619 ORTHO05D001541 6.3e-07 57.8 113 37.2
Potri.002G005400 Populus trichocarpa HOM05D001619 ORTHO05D001541 6.3e-07 57.8 93 41.9
MBI01_g17252_MAGBIO Magnolia biondii HOM05D001619 ORTHO05D001541 1.4e-06 56.6 71 46.5
Sabra11G0071400 Salix brachista HOM05D001619 ORTHO05D001541 1.4e-06 56.6 93 39.8
Medtr2g007290 Medicago truncatula HOM05D001619 ORTHO05D001541 1.8e-06 56.2 58 50.0
Aa31LG7G5030 Aethionema arabicum HOM05D001619 ORTHO05D001541 2.4e-06 55.8 58 48.3
CANSAT78G1558 Cannabis sativa HOM05D001619 ORTHO05D001541 2.4e-06 55.8 116 34.5
TWI12G0029 Tripterygium wilfordii HOM05D001619 ORTHO05D001541 2.4e-06 55.8 106 34.0
Sabra02G0003800 Salix brachista HOM05D001619 ORTHO05D001541 4.1e-06 55.1 93 39.8
SGA_v2.0_scaffold227G43158 Striga asiatica HOM05D001619 ORTHO05D001541 5.4e-06 54.7 88 40.9


User provided reference genes

Program Settings