Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022331 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.5e-301 1038.9 576 100.0
Actinidia25982 Actinidia chinensis HOM05D005450 ORTHO05D006880 1.1e-184 650.6 572 69.1
CSS0005386 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.9e-176 623.2 586 65.4
CSS0031650 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 2.5e-176 622.9 586 65.2
Actinidia03357 Actinidia chinensis HOM05D005450 ORTHO05D006880 1.3e-172 610.5 569 65.2
Dinv25238 Davidia involucrata HOM05D005450 ORTHO05D006880 2.7e-170 602.8 624 62.0
Rhsim11G0018700 Rhododendron simsii HOM05D005450 ORTHO05D006880 2.6e-157 559.7 658 56.7
Hma1.2p1_0303F.1_g118850 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 1.1e-152 544.3 595 60.2
vmacro00310 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 2.2e-148 530.0 459 68.0
Actinidia14788 Actinidia chinensis HOM05D005450 ORTHO05D006880 2.1e-138 496.9 553 56.4
TWI81G0857 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 5.7e-136 488.8 562 54.6
TWI60G0421 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 3.1e-134 483.0 562 56.0
Hma1.2p1_0303F.1_g118860 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 2.0e-133 480.3 462 63.6
Solyc08g076660.3 Solanum lycopersicum HOM05D005450 ORTHO05D006880 4.2e-131 472.6 586 51.2
PGSC0003DMG400017545 Solanum tuberosum HOM05D005450 ORTHO05D006880 6.1e-130 468.8 563 54.0
Prupe.5G032300 Prunus persica HOM05D005450 ORTHO05D006880 5.2e-129 465.7 594 51.2
Sopen08g025210 Solanum pennellii HOM05D005450 ORTHO05D006880 1.5e-128 464.2 560 52.3
TAR375G0838 Trochodendron aralioides HOM05D005450 ORTHO05D006880 2.6e-128 463.4 567 52.7
Lj2A234T41 Lonicera japonica HOM05D005450 ORTHO05D006880 4.4e-128 462.6 577 54.6
Cpa.g.c28481.1 Carica papaya HOM05D005450 ORTHO05D006880 9.8e-128 461.5 570 52.1
Thecc.03G305800 Theobroma cacao HOM05D005450 ORTHO05D006880 1.8e-126 457.2 566 53.4
RcHm_v2.0_Chr7g0210251 Rosa chinensis HOM05D005450 ORTHO05D006880 1.9e-123 447.2 603 49.3
SGA_v2.0_scaffold6G03148 Striga asiatica HOM05D005450 ORTHO05D001776 1.9e-123 447.2 605 51.6
Manes.15G193000 Manihot esculenta HOM05D005450 ORTHO05D006880 3.3e-123 446.4 575 52.0
Nn3g19446 Nelumbo nucifera HOM05D005450 ORTHO05D006880 4.7e-122 442.6 382 67.0
DCAR_008245 Daucus carota HOM05D005450 ORTHO05D006880 6.1e-122 442.2 575 48.5
VMungo1215G2703 Vigna mungo HOM05D005450 ORTHO05D006880 3.0e-121 439.9 604 49.8
Gohir.D12G209900 Gossypium hirsutum HOM05D005450 ORTHO05D006880 5.2e-121 439.1 570 51.2
PGR031G1299 Punica granatum HOM05D005450 ORTHO05D006880 6.8e-121 438.7 570 51.9
Gohir.A12G207500 Gossypium hirsutum HOM05D005450 ORTHO05D006880 2.6e-120 436.8 570 50.7
MD16G1272400 Malus domestica HOM05D005450 ORTHO05D006880 3.4e-120 436.4 585 48.5
Duzib205G1163 Durio zibethinus HOM05D005450 ORTHO05D006880 4.4e-120 436.0 566 52.1
Peaxi162Scf00170g01229 Petunia axillaris HOM05D005450 ORTHO05D006880 2.8e-119 433.3 561 51.5
Cc08_g03160 Coffea canephora HOM05D005450 ORTHO05D006880 3.7e-119 433.0 566 52.7
Gorai.008G225500 Gossypium raimondii HOM05D005450 ORTHO05D006880 6.3e-119 432.2 570 50.7
MSTRG.1990 Avicennia marina HOM05D005450 ORTHO05D006880 8.3e-119 431.8 589 48.2
MD06G1037000 Malus domestica HOM05D005450 ORTHO05D006880 7.0e-118 428.7 592 47.5
Nitab4.5_0000353g0110 Nicotiana tabacum HOM05D005450 ORTHO05D006880 1.6e-117 427.6 564 51.2
Phvul.002G139900 Phaseolus vulgaris HOM05D005450 ORTHO05D006880 2.3e-116 423.7 613 47.6
Hund11224 Selenicereus undatus HOM05D005450 ORTHO05D006880 3.9e-116 422.9 600 49.7
CsaV3_3G001550 Cucumis sativus L. HOM05D005450 ORTHO05D006880 3.3e-115 419.9 585 49.6
MELO3C013841.2 Cucumis melo HOM05D005450 ORTHO05D006880 9.5e-115 418.3 584 49.5
Nitab4.5_0002203g0010 Nicotiana tabacum HOM05D005450 ORTHO05D006880 2.8e-114 416.8 564 48.6
Potri.003G093900 Populus trichocarpa HOM05D005450 ORTHO05D006880 4.7e-114 416.0 567 48.9
FAN08G0023 Fragaria x ananassa HOM05D005450 ORTHO05D006880 8.0e-114 415.2 595 47.6
ECA233G1178 Erigeron canadensis HOM05D005450 ORTHO05D006880 1.0e-113 414.8 559 51.2
FvH4_5g22460 Fragaria vesca HOM05D005450 ORTHO05D006880 1.8e-113 414.1 595 47.7
FAN18G0707 Fragaria x ananassa HOM05D005450 ORTHO05D006880 1.8e-113 414.1 595 47.7
CiPaw.11G095800 Carya illinoinensis HOM05D005450 ORTHO05D006880 2.3e-113 413.7 386 62.7
FAN13G0945 Fragaria x ananassa HOM05D005450 ORTHO05D006880 3.1e-113 413.3 595 47.2
HanXRQChr13g0395441 Helianthus annuus HOM05D005450 ORTHO05D006880 4.0e-113 412.9 568 51.9
Potri.001G140300 Populus trichocarpa HOM05D005450 ORTHO05D006880 6.8e-113 412.1 571 48.7
FAN18G2323 Fragaria x ananassa HOM05D005450 ORTHO05D006880 8.9e-113 411.8 595 47.4
Sabra01G0109200 Salix brachista HOM05D005450 ORTHO05D006880 2.0e-112 410.6 569 49.0
FAN04G1305 Fragaria x ananassa HOM05D005450 ORTHO05D006880 2.6e-112 410.2 595 46.9
Migut.E00784 Erythranthe guttata HOM05D005450 ORTHO05D006880 9.8e-112 408.3 590 48.3
Eucgr.D02212 Eucalyptus grandis HOM05D005450 ORTHO05D006880 9.8e-112 408.3 585 46.3
Glyma.01G016900 Glycine max HOM05D005450 ORTHO05D006880 1.3e-111 407.9 583 48.0
Lsat_1_v5_gn_6_4021 Lactuca sativa HOM05D005450 ORTHO05D006880 1.3e-111 407.9 562 49.1
Sed0009079 Sechium edule HOM05D005450 ORTHO05D006880 1.3e-111 407.9 583 47.5
ClCG10G001470 Citrullus lanatus HOM05D005450 ORTHO05D006880 3.7e-111 406.4 584 47.6
Haze_08190 Corylus avellana HOM05D005450 ORTHO05D006880 8.3e-111 405.2 594 47.6
CANSAT21G1200 Cannabis sativa HOM05D005450 ORTHO05D006880 1.1e-110 404.8 563 48.0
vmacro14185 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 4.1e-110 402.9 461 56.6
Rhsim07G0129900 Rhododendron simsii HOM05D005450 ORTHO05D006880 1.2e-109 401.4 491 52.3
MBI04_g05750_MAGBIO Magnolia biondii HOM05D005450 ORTHO05D006880 3.5e-109 399.8 374 60.7
arahy.Tifrunner.gnm1.ann1.95XRJP Arachis hypogaea HOM05D005450 ORTHO05D006880 1.3e-108 397.9 593 47.9
arahy.Tifrunner.gnm1.ann1.M4GMJK Arachis hypogaea HOM05D005450 ORTHO05D006880 1.3e-108 397.9 593 47.9
HanXRQChr04g0099011 Helianthus annuus HOM05D005450 ORTHO05D006880 1.2e-106 391.3 556 48.6
Lalb_Chr05g0215901 Lupinus albus HOM05D005450 ORTHO05D006880 4.7e-106 389.4 574 47.4
Glyma.09G205900 Glycine max HOM05D005450 ORTHO05D006880 1.8e-105 387.5 583 46.1
Aqoxy3G02278 Aquilegia oxysepala HOM05D005450 ORTHO05D006880 2.3e-105 387.1 385 58.7
Sc22g0001610 Simmondsia chinensis HOM05D005450 ORTHO05D006880 1.5e-104 384.4 609 48.6
GSVIVG01013130001 Vitis vinifera HOM05D005450 ORTHO05D006880 1.5e-104 384.4 513 50.1
unitig_699.g19789 Utricularia gibba HOM05D005450 ORTHO05D001249 5.8e-104 382.5 555 47.0
EL10Ac5g12080 Beta vulgaris HOM05D005450 ORTHO05D006880 9.8e-104 381.7 606 45.7
Ciclev10014807m.g Citrus clementina HOM05D005450 ORTHO05D006880 1.9e-102 377.5 566 46.5
PSO782G2687 Papaver somniferum HOM05D005450 ORTHO05D006880 3.2e-102 376.7 384 58.6
Medtr5g029900 Medicago truncatula HOM05D005450 ORTHO05D006880 2.7e-101 373.6 584 47.3
COL.COLO4_16985 Corchorus olitorius HOM05D005450 ORTHO05D006880 4.6e-101 372.9 316 67.7
QL12p004713 Quercus lobata HOM05D005450 ORTHO05D006880 4.6e-101 372.9 560 47.9
Lj2g0023622 Lotus japonicus HOM05D005450 ORTHO05D006880 2.3e-100 370.5 384 57.8
Thhalv10000858m.g Eutrema salsugineum HOM05D005450 ORTHO05D006880 1.1e-99 368.2 573 46.2
PSO063G4121 Papaver somniferum HOM05D005450 ORTHO05D006880 1.1e-99 368.2 382 58.1
Sp2g11640 Schrenkiella parvula HOM05D005450 ORTHO05D006880 1.5e-99 367.9 555 45.6
Ca_25196_v3 Cicer arietinum L. HOM05D005450 ORTHO05D006880 3.3e-99 366.7 419 53.7
TPR.G8114 Trifolium pratense HOM05D005450 ORTHO05D006880 7.3e-99 365.5 401 54.6
Aa31LG9G6020 Aethionema arabicum HOM05D005450 ORTHO05D006880 3.1e-97 360.1 537 48.2
BraA06t27430Z Brassica rapa HOM05D005450 ORTHO05D006880 3.1e-97 360.1 388 56.7
BolC7t43556H Brassica oleracea HOM05D005450 ORTHO05D006880 5.2e-97 359.4 388 56.7
AL8G11490 Arabidopsis lyrata HOM05D005450 ORTHO05D006880 8.9e-97 358.6 391 56.0
A06p45580 Brassica napus HOM05D005450 ORTHO05D006880 8.9e-97 358.6 388 56.4
BcaC06g34338 Brassica carinata HOM05D005450 ORTHO05D006880 1.2e-96 358.2 388 56.4
C07p30200 Brassica napus HOM05D005450 ORTHO05D006880 1.2e-96 358.2 388 56.4
THA.LOC104806699 Tarenaya hassleriana HOM05D005450 ORTHO05D006880 1.2e-96 358.2 569 44.5
AUR62018696 Chenopodium quinoa HOM05D005450 ORTHO05D006880 1.5e-96 357.8 601 41.6
AUR62007307 Chenopodium quinoa HOM05D005450 ORTHO05D006880 2.9e-95 353.6 384 52.9
AT5G46840 Arabidopsis thaliana HOM05D005450 ORTHO05D006880 4.9e-95 352.8 390 56.7
Atru.chr6.1648 Acer truncatum HOM05D005450 ORTHO05D006880 1.4e-94 351.3 376 57.2
BcaC06g31440 Brassica carinata HOM05D005450 ORTHO05D006880 4.1e-94 349.7 392 55.6
Psat2g137240 Pisum sativum HOM05D005450 ORTHO05D006880 4.1e-94 349.7 341 60.4
Carub.0008s0107 Capsella rubella HOM05D005450 ORTHO05D006880 7.1e-94 349.0 578 45.2
Ah.12g055200 Amaranthus hybridus HOM05D005450 ORTHO05D006880 1.0e-92 345.1 493 47.1
CARHR174610 Cardamine hirsuta HOM05D005450 ORTHO05D006880 1.5e-91 341.3 389 54.0
CDE11G1012 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 5.8e-88 329.3 377 53.1
HPP92_020907 Vanilla planifolia HOM05D005450 ORTHO05D006880 3.5e-85 320.1 370 53.8
ATR0665G143 Amborella trichopoda HOM05D005450 ORTHO05D006880 3.0e-84 317.0 601 41.1
Os03g0854300 Oryza sativa ssp. japonica HOM05D005450 ORTHO05D006880 3.0e-84 317.0 356 54.8
Zm00001eb210550 Zea mays HOM05D005450 ORTHO05D006880 3.3e-83 313.5 362 53.9
Lalb_Chr16g0381251 Lupinus albus HOM05D005450 ORTHO05D006880 6.9e-81 305.8 419 49.9
Sabra03G0063000 Salix brachista HOM05D005450 ORTHO05D006880 3.2e-78 297.0 419 49.9
CSS0028579 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 4.5e-64 250.0 141 87.9
CSS0022748 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.5e-59 235.0 132 88.6
AagrBONN_evm.TU.Sc2ySwM_228.2336 Anthoceros agrestis HOM05D005450 ORTHO05D006880 2.5e-51 207.6 355 42.0
CDE11G0708 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 3.3e-51 207.2 251 45.8
Mapoly0168s0008 Marchantia polymorpha HOM05D005450 ORTHO05D006880 3.2e-46 190.7 467 34.5
CSS0005944 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 9.4e-46 189.1 108 88.9
Pp3c17_19260 Physcomitrium patens HOM05D005450 ORTHO05D006880 1.5e-43 181.8 333 40.8
SEGI_20635 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 2.8e-42 177.6 306 41.2
CBR_g19667 Chara braunii HOM05D005450 ORTHO05D006880 8.2e-42 176.0 456 37.3
BcaC03g16894 Brassica carinata HOM05D005450 ORTHO05D006880 2.9e-39 167.5 193 48.7
MCO09G223 Micromonas commoda HOM05D005450 ORTHO05D006880 5.9e-32 143.3 322 35.4
arahy.Tifrunner.gnm1.ann1.HL18KG Arachis hypogaea HOM05D005450 ORTHO05D006880 1.2e-29 135.6 112 62.5
SHI51348 Sapria himalayana HOM05D005450 ORTHO05D006880 1.0e-28 132.5 228 42.1
BcaC03g16897 Brassica carinata HOM05D005450 ORTHO05D006880 2.0e-27 128.3 197 41.1
BolC2t10828H Brassica oleracea HOM05D005450 ORTHO05D006880 2.0e-27 128.3 197 41.1
C02p47920 Brassica napus HOM05D005450 ORTHO05D006880 1.3e-26 125.6 103 58.3
BolC2t10824H Brassica oleracea HOM05D005450 ORTHO05D006880 1.3e-26 125.6 103 58.3
Cre16.g659150 Chlamydomonas reinhardtii HOM05D005450 ORTHO05D006880 2.4e-25 121.3 361 31.9
C02p47970 Brassica napus HOM05D005450 ORTHO05D006880 9.1e-25 119.4 197 40.1
Lj2P235T37 Lonicera japonica HOM05D005450 ORTHO05D006880 3.6e-21 107.5 171 53.2
Actinidia09179 Actinidia chinensis HOM05D005450 ORTHO05D006880 2.2e-18 98.2 65 76.9
SEGI_27441 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 2.7e-16 91.3 278 32.0
Aa31sc427G40 Aethionema arabicum HOM05D005450 ORTHO05D006880 2.2e-15 88.2 148 48.6
Cfa024331 Carpinus fangiana HOM05D005450 ORTHO05D006880 2.3e-07 61.6 368 27.4
Ciclev10027463m.g Citrus clementina HOM05D000285 ORTHO05D000241 8.6e-07 59.7 207 24.2
C09p29040 Brassica napus HOM05D005450 ORTHO05D006880 1.1e-06 59.3 120 35.0
Cpa.g.sc1.353 Carica papaya HOM05D006053 ORTHO05D008381 4.3e-06 57.4 165 27.3
Lsat_1_v5_gn_9_66300 Lactuca sativa HOM05D006053 ORTHO05D008381 7.3e-06 56.6 238 24.4


User provided reference genes

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