Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022323 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 1.4e-21 105.5 60 100.0
CSS0036543 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 5.6e-18 93.6 60 85.0
Thecc.01G412500 Theobroma cacao HOM05D005524 ORTHO05D005392 1.4e-13 79.0 60 71.7
CSS0011241 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 1.9e-13 78.6 60 73.3
CSS0022867 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 1.9e-13 78.6 60 73.3
CSS0036301 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 1.9e-13 78.6 60 73.3
Potri.006G056200 Populus trichocarpa HOM05D005524 ORTHO05D005392 1.3e-11 72.4 62 66.1
Potri.001G268800 Populus trichocarpa HOM05D005524 ORTHO05D005392 3.0e-11 71.2 61 67.2
Hma1.2p1_0293F.1_g116270 Hydrangea macrophylla HOM05D005524 ORTHO05D005392 3.9e-11 70.9 64 70.3
Rhsim03G0011800 Rhododendron simsii HOM05D005524 ORTHO05D005392 3.9e-11 70.9 60 68.3
Potri.009G063600 Populus trichocarpa HOM05D005524 ORTHO05D005392 5.1e-11 70.5 61 65.6
Phvul.001G137100 Phaseolus vulgaris HOM05D005524 ORTHO05D005392 6.6e-11 70.1 57 66.7
Sabra16G0164700 Salix brachista HOM05D005524 ORTHO05D005392 8.6e-11 69.7 61 65.6
Eucgr.A02403 Eucalyptus grandis HOM05D005524 ORTHO05D005392 1.5e-10 68.9 62 69.4
Potri.016G052001 Populus trichocarpa HOM05D005524 ORTHO05D005392 1.9e-10 68.6 62 64.5
Dinv18091 Davidia involucrata HOM05D005524 ORTHO05D005392 3.3e-10 67.8 62 66.1
AT3G57690 Arabidopsis thaliana HOM05D005524 ORTHO05D005392 1.2e-09 65.9 62 62.9
Duzib093G2098 Durio zibethinus HOM05D005524 ORTHO05D005392 1.6e-09 65.5 63 63.5
Duzib106G1083 Durio zibethinus HOM05D005524 ORTHO05D005392 1.6e-09 65.5 63 61.9
Eucgr.H02490 Eucalyptus grandis HOM05D005524 ORTHO05D005392 1.6e-09 65.5 60 63.3
Manes.07G004601 Manihot esculenta HOM05D005524 ORTHO05D005392 1.6e-09 65.5 63 61.9
BcaB02g07583 Brassica carinata HOM05D005524 ORTHO05D005392 2.1e-09 65.1 62 61.3
BcaC08g44863 Brassica carinata HOM05D005524 ORTHO05D005392 2.1e-09 65.1 62 61.3
BolC6t37629H Brassica oleracea HOM05D005524 ORTHO05D005392 2.1e-09 65.1 62 61.3
BcaB02g08300 Brassica carinata HOM05D005524 ORTHO05D005392 3.6e-09 64.3 62 59.7
BcaB02g08302 Brassica carinata HOM05D005524 ORTHO05D005392 3.6e-09 64.3 62 59.7
BcaC02g09954 Brassica carinata HOM05D005524 ORTHO05D005392 3.6e-09 64.3 62 59.7
A04p02980 Brassica napus HOM05D005524 ORTHO05D005392 3.6e-09 64.3 62 59.7
C04p34740 Brassica napus HOM05D005524 ORTHO05D005392 3.6e-09 64.3 62 59.7
BolC4t25028H Brassica oleracea HOM05D005524 ORTHO05D005392 3.6e-09 64.3 62 59.7
BraA04t16021Z Brassica rapa HOM05D005524 ORTHO05D005392 3.6e-09 64.3 62 59.7
CSS0030443 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 3.6e-09 64.3 60 61.7
Sp4g24180 Schrenkiella parvula HOM05D005524 ORTHO05D005392 3.6e-09 64.3 62 64.5
A07p23640 Brassica napus HOM05D005524 ORTHO05D005392 4.7e-09 63.9 62 61.3
BraA07t30018Z Brassica rapa HOM05D005524 ORTHO05D005392 4.7e-09 63.9 62 61.3
CARHR137000 Cardamine hirsuta HOM05D005524 ORTHO05D005392 4.7e-09 63.9 62 61.3
Hma1.2p1_0621F.1_g190610 Hydrangea macrophylla HOM05D005524 ORTHO05D005392 4.7e-09 63.9 60 61.7
Aa31LG10G12450 Aethionema arabicum HOM05D005524 ORTHO05D005392 6.2e-09 63.5 61 59.0
AT2G41905 Arabidopsis thaliana HOM05D005524 ORTHO05D005392 6.2e-09 63.5 62 62.9
C06p24770 Brassica napus HOM05D005524 ORTHO05D005392 6.2e-09 63.5 62 59.7
Carub.0004s2422 Capsella rubella HOM05D005524 ORTHO05D005392 6.2e-09 63.5 62 61.3
CARHR167870 Cardamine hirsuta HOM05D005524 ORTHO05D005392 6.2e-09 63.5 62 61.3
BcaC02g07275 Brassica carinata HOM05D005524 ORTHO05D005392 8.1e-09 63.2 62 62.9
BcaC07g40352 Brassica carinata HOM05D005524 ORTHO05D005392 8.1e-09 63.2 62 58.1
A04p31910 Brassica napus HOM05D005524 ORTHO05D005392 8.1e-09 63.2 62 62.9
C04p69380 Brassica napus HOM05D005524 ORTHO05D005392 8.1e-09 63.2 62 62.9
C08p33270 Brassica napus HOM05D005524 ORTHO05D005392 8.1e-09 63.2 62 58.1
BolC4t28440H Brassica oleracea HOM05D005524 ORTHO05D005392 8.1e-09 63.2 62 62.9
BolC8t50929H Brassica oleracea HOM05D005524 ORTHO05D005392 8.1e-09 63.2 62 58.1
BraA04t18649Z Brassica rapa HOM05D005524 ORTHO05D005392 8.1e-09 63.2 62 62.9
Duzib128G1940 Durio zibethinus HOM05D005524 ORTHO05D005392 8.1e-09 63.2 65 58.5
TWI73G1008 Tripterygium wilfordii HOM05D005524 ORTHO05D005392 8.1e-09 63.2 61 62.3
AL4G40250 Arabidopsis lyrata HOM05D005524 ORTHO05D005392 1.1e-08 62.8 62 61.3
A09p50540 Brassica napus HOM05D005524 ORTHO05D005392 1.1e-08 62.8 62 58.1
CSS0022662 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 1.4e-08 62.4 60 60.0
AL5G39310 Arabidopsis lyrata HOM05D005524 ORTHO05D005392 1.8e-08 62.0 63 61.9
BcaB06g29217 Brassica carinata HOM05D005524 ORTHO05D005392 1.8e-08 62.0 62 61.3
BcaNung07196 Brassica carinata HOM05D005524 ORTHO05D005392 2.3e-08 61.6 62 61.3
BraA09t40508Z Brassica rapa HOM05D005524 ORTHO05D005392 2.3e-08 61.6 62 56.5
TWI09G0988 Tripterygium wilfordii HOM05D005524 ORTHO05D005392 2.3e-08 61.6 61 62.3
BcaB01g03426 Brassica carinata HOM05D005524 ORTHO05D005392 3.1e-08 61.2 62 59.7
Atru.chr1.974 Acer truncatum HOM05D005524 ORTHO05D005392 4.0e-08 60.8 67 61.2
ClCG10G012450 Citrullus lanatus HOM05D005524 ORTHO05D005392 5.2e-08 60.5 62 59.7
Thecc.05G164300 Theobroma cacao HOM05D005524 ORTHO05D005392 5.2e-08 60.5 64 62.5
BcaC07g40149 Brassica carinata HOM05D005524 ORTHO05D005392 6.8e-08 60.1 62 59.7
Glyma.02G180200 Glycine max HOM05D005524 ORTHO05D005392 8.9e-08 59.7 59 64.4
Atru.chr1.1006 Acer truncatum HOM05D005524 ORTHO05D005392 1.2e-07 59.3 67 59.7
A03p23470 Brassica napus HOM05D005524 ORTHO05D005392 1.2e-07 59.3 62 59.7
BraA03t11563Z Brassica rapa HOM05D005524 ORTHO05D005392 1.2e-07 59.3 62 59.7
Sp5g04940 Schrenkiella parvula HOM05D005524 ORTHO05D005392 1.2e-07 59.3 63 60.3
PSO384G3061 Papaver somniferum HOM05D005524 ORTHO05D005392 2.0e-07 58.5 63 60.3
BcaC01g05321 Brassica carinata HOM05D005524 ORTHO05D005392 2.6e-07 58.2 62 58.1
C03p27990 Brassica napus HOM05D005524 ORTHO05D005392 2.6e-07 58.2 62 58.1
BolC3t15170H Brassica oleracea HOM05D005524 ORTHO05D005392 2.6e-07 58.2 62 58.1
SHI24452 Sapria himalayana HOM05D005524 ORTHO05D005392 2.6e-07 58.2 57 61.4
Ca_05436_v3 Cicer arietinum L. HOM05D005524 ORTHO05D005392 3.4e-07 57.8 57 57.9
Sed0016248 Sechium edule HOM05D005524 ORTHO05D005392 3.4e-07 57.8 64 59.4
CsaV3_3G032220 Cucumis sativus L. HOM05D005524 ORTHO05D005392 4.4e-07 57.4 60 58.3
Lj1g0001667 Lotus japonicus HOM05D005524 ORTHO05D005392 4.4e-07 57.4 57 61.4
CiPaw.13G003600 Carya illinoinensis HOM05D005524 ORTHO05D005392 7.6e-07 56.6 65 60.0
Hma1.2p1_0312F.1_g121430 Hydrangea macrophylla HOM05D005524 ORTHO05D005392 1.7e-06 55.5 61 59.0
Cc02_g27760 Coffea canephora HOM05D005524 ORTHO05D005392 2.2e-06 55.1 62 56.5
Lalb_Chr19g0132101 Lupinus albus HOM05D005524 ORTHO05D005392 3.7e-06 54.3 59 59.3
Cc02_g27740 Coffea canephora HOM05D005524 ORTHO05D005392 4.9e-06 53.9 62 54.8
Lalb_Chr01g0017541 Lupinus albus HOM05D005524 ORTHO05D005392 4.9e-06 53.9 59 57.6
Lalb_Chr01g0008091 Lupinus albus HOM05D005524 ORTHO05D005392 6.4e-06 53.5 59 62.7
ClCG09G004270 Citrullus lanatus HOM05D005524 ORTHO05D005392 8.4e-06 53.1 64 56.2
Haze_03228 Corylus avellana HOM05D000430 ORTHO05D000305 8.4e-06 53.1 67 56.7
Glyma.06G257800 Glycine max HOM05D005524 ORTHO05D025034 8.4e-06 53.1 59 57.6
Hma1.2p1_0728F.1_g209250 Hydrangea macrophylla HOM05D005524 ORTHO05D005392 8.4e-06 53.1 62 53.2
TPR.G3828 Trifolium pratense HOM05D005524 ORTHO05D005392 8.4e-06 53.1 59 54.2


User provided reference genes

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