Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022309 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 2.4e-153 545.4 271 100.0
CSS0001500 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 1.4e-145 519.6 294 90.8
Dinv22371 Davidia involucrata HOM05D004279 ORTHO05D004979 3.5e-128 461.8 294 80.6
Lj1A851T62 Lonicera japonica HOM05D004279 ORTHO05D004979 2.1e-125 452.6 294 79.3
Dinv08329 Davidia involucrata HOM05D004279 ORTHO05D004979 2.4e-124 449.1 274 83.2
Actinidia35269 Actinidia chinensis HOM05D004279 ORTHO05D004979 2.4e-121 439.1 295 76.9
Rhsim04G0018800 Rhododendron simsii HOM05D004279 ORTHO05D004979 3.9e-119 431.8 295 76.3
TAR626G0357 Trochodendron aralioides HOM05D004279 ORTHO05D004979 2.5e-118 429.1 294 74.5
CSS0025917 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 5.6e-118 427.9 290 75.5
Lsat_1_v5_gn_5_7280 Lactuca sativa HOM05D004279 ORTHO05D004979 3.7e-117 425.2 295 75.3
Nn1g06689 Nelumbo nucifera HOM05D004279 ORTHO05D004979 6.2e-117 424.5 270 79.6
Hma1.2p1_1274F.1_g271930 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 1.8e-116 422.9 290 74.8
Nn1g03957 Nelumbo nucifera HOM05D004279 ORTHO05D004979 2.6e-115 419.1 294 73.5
HanXRQChr05g0156561 Helianthus annuus HOM05D004279 ORTHO05D004979 4.5e-115 418.3 295 74.2
PSO210G3340 Papaver somniferum HOM05D004279 ORTHO05D004979 5.8e-115 417.9 296 72.3
PSO832G3402 Papaver somniferum HOM05D004279 ORTHO05D004979 5.8e-115 417.9 296 72.3
Aqoxy4G01310 Aquilegia oxysepala HOM05D004279 ORTHO05D004979 6.4e-114 414.5 296 72.0
CSS0045555 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 3.2e-113 412.1 280 75.4
Hma1.2p1_1143F.1_g261130 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 4.2e-113 411.8 290 72.8
Actinidia18754 Actinidia chinensis HOM05D002936 ORTHO05D004979 1.6e-112 409.8 271 78.2
DCAR_009977 Daucus carota HOM05D004279 ORTHO05D004979 3.5e-112 408.7 294 73.1
PGSC0003DMG400019253 Solanum tuberosum HOM05D004279 ORTHO05D004979 1.5e-110 403.3 295 69.8
ECA236G3281 Erigeron canadensis HOM05D004279 ORTHO05D004979 2.5e-110 402.5 290 72.1
Nitab4.5_0000815g0050 Nicotiana tabacum HOM05D004279 ORTHO05D004979 2.5e-110 402.5 295 71.2
Peaxi162Scf01111g00012 Petunia axillaris HOM05D004279 ORTHO05D004979 2.5e-110 402.5 295 71.5
Solyc07g063460.3 Solanum lycopersicum HOM05D004279 ORTHO05D004979 2.5e-110 402.5 295 69.8
Sopen07g031640 Solanum pennellii HOM05D004279 ORTHO05D004979 2.5e-110 402.5 295 69.8
Nitab4.5_0009177g0010 Nicotiana tabacum HOM05D004279 ORTHO05D004979 3.3e-110 402.1 295 71.2
Migut.H01911 Erythranthe guttata HOM05D004279 ORTHO05D004979 7.4e-110 401.0 300 68.7
Cc05_g12550 Coffea canephora HOM05D004279 ORTHO05D004979 4.8e-109 398.3 300 68.7
HanXRQChr13g0386401 Helianthus annuus HOM05D004279 ORTHO05D004979 8.2e-109 397.5 292 70.5
MSTRG.12925 Avicennia marina HOM05D004279 ORTHO05D004979 2.6e-107 392.5 302 67.5
DCAR_022481 Daucus carota HOM05D004279 ORTHO05D004979 2.9e-106 389.0 295 69.5
QL08p019074 Quercus lobata HOM05D004279 ORTHO05D004979 3.8e-106 388.7 295 69.8
Lsat_1_v5_gn_7_105700 Lactuca sativa HOM05D004279 ORTHO05D004979 6.5e-106 387.9 286 71.3
TWI38G1973 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 8.4e-106 387.5 296 68.9
TAR624G0257 Trochodendron aralioides HOM05D004279 ORTHO05D004979 2.5e-105 386.0 278 72.3
MSTRG.14375 Avicennia marina HOM05D004279 ORTHO05D004979 7.1e-105 384.4 302 67.5
TWI39G0076 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 1.2e-104 383.6 295 69.2
CiPaw.12G122100 Carya illinoinensis HOM05D004279 ORTHO05D004979 2.7e-104 382.5 293 70.0
ClCG11G018340 Citrullus lanatus HOM05D004279 ORTHO05D004979 2.7e-104 382.5 289 68.9
CANSAT11G2237 Cannabis sativa HOM05D004279 ORTHO05D004979 4.6e-104 381.7 294 69.0
MELO3C018223.2 Cucumis melo HOM05D004279 ORTHO05D004979 1.3e-103 380.2 293 68.6
CsaV3_3G044480 Cucumis sativus L. HOM05D004279 ORTHO05D004979 1.3e-103 380.2 293 68.6
Oeu055672.1 Olea europaea HOM05D004279 ORTHO05D004979 3.0e-103 379.0 301 65.1
Cpa.g.sc80.101 Carica papaya HOM05D004279 ORTHO05D004979 5.1e-103 378.3 291 69.8
SGA_v2.0_scaffold9G04950 Striga asiatica HOM05D004279 ORTHO05D004979 5.1e-103 378.3 300 67.3
Oeu008023.1 Olea europaea HOM05D004279 ORTHO05D004979 1.1e-102 377.1 301 64.1
Haze_09505 Corylus avellana HOM05D004279 ORTHO05D004979 1.5e-102 376.7 295 69.8
Cfa020528 Carpinus fangiana HOM05D004279 ORTHO05D004979 5.7e-102 374.8 295 69.8
CiPaw.11G174600 Carya illinoinensis HOM05D004279 ORTHO05D004979 7.4e-102 374.4 291 69.1
Gohir.D01G054400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 7.4e-102 374.4 291 70.1
Gorai.002G074300 Gossypium raimondii HOM05D004279 ORTHO05D004979 7.4e-102 374.4 291 70.1
RcHm_v2.0_Chr5g0034991 Rosa chinensis HOM05D004279 ORTHO05D004979 9.7e-102 374.0 290 67.6
Gorai.009G432300 Gossypium raimondii HOM05D004279 ORTHO05D004979 1.3e-101 373.6 291 68.4
SalBow7G1458 Salvia bowleyana HOM05D004279 ORTHO05D004979 1.3e-101 373.6 288 67.0
FAN16G2997 Fragaria x ananassa HOM05D004279 ORTHO05D004979 2.8e-101 372.5 290 67.6
FAN11G1457 Fragaria x ananassa HOM05D004279 ORTHO05D004979 3.7e-101 372.1 290 67.6
Potri.001G405200 Populus trichocarpa HOM05D004279 ORTHO05D004979 3.7e-101 372.1 291 67.4
Manes.15G084500 Manihot esculenta HOM05D004279 ORTHO05D004979 4.8e-101 371.7 297 68.0
FvH4_3g20760 Fragaria vesca HOM05D004279 ORTHO05D004979 8.2e-101 370.9 290 67.2
Gohir.A01G067200 Gossypium hirsutum HOM05D004279 ORTHO05D004979 8.2e-101 370.9 291 69.8
Prupe.4G187700 Prunus persica HOM05D004279 ORTHO05D004979 8.2e-101 370.9 285 67.7
PGR031G2155 Punica granatum HOM05D004279 ORTHO05D004979 8.2e-101 370.9 292 68.5
FAN21G3274 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.1e-100 370.5 290 67.2
Gohir.D05G360400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 1.1e-100 370.5 291 68.0
Duzib213G0014 Durio zibethinus HOM05D004279 ORTHO05D004979 1.4e-100 370.2 291 69.1
Duzib268G0928 Durio zibethinus HOM05D004279 ORTHO05D004979 4.1e-100 368.6 291 68.4
COL.COLO4_09461 Corchorus olitorius HOM05D004279 ORTHO05D004979 5.3e-100 368.2 291 68.4
Sabra16G0266200 Salix brachista HOM05D004279 ORTHO05D004979 9.0e-100 367.5 291 66.3
Eucgr.F01088 Eucalyptus grandis HOM05D004279 ORTHO05D004979 1.2e-99 367.1 291 68.0
FAN25G2565 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.2e-99 367.1 290 66.9
MD03G1221800 Malus domestica HOM05D004279 ORTHO05D004979 1.2e-99 367.1 285 67.4
Thecc.07G074500 Theobroma cacao HOM05D004279 ORTHO05D004979 1.2e-99 367.1 291 68.0
MD11G1239200 Malus domestica HOM05D004279 ORTHO05D004979 2.0e-99 366.3 285 65.6
Gohir.A04G027700 Gossypium hirsutum HOM05D004279 ORTHO05D004979 2.6e-99 365.9 291 66.7
Manes.03G114800 Manihot esculenta HOM05D004279 ORTHO05D004979 3.4e-99 365.5 297 66.7
Sed0000911 Sechium edule HOM05D004279 ORTHO05D004979 4.5e-99 365.2 289 66.4
Ca_01814_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 7.6e-99 364.4 293 67.9
Ca_30536_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 7.6e-99 364.4 293 67.9
Glyma.12G220600 Glycine max HOM05D004279 ORTHO05D004979 7.6e-99 364.4 293 67.2
TPR.G38955 Trifolium pratense HOM05D004279 ORTHO05D004979 7.6e-99 364.4 293 67.9
Lj3g0025503 Lotus japonicus HOM05D004279 ORTHO05D004979 1.7e-98 363.2 295 66.8
MBI02_g29384_MAGBIO Magnolia biondii HOM05D004279 ORTHO05D004979 1.7e-98 363.2 289 65.7
Sed0021920 Sechium edule HOM05D004279 ORTHO05D004979 1.7e-98 363.2 294 66.3
unitig_0.g2258 Utricularia gibba HOM05D004279 ORTHO05D004979 3.8e-98 362.1 300 61.7
AT5G54400 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 5.0e-98 361.7 292 66.4
Psat4g016400 Pisum sativum HOM05D004279 ORTHO05D004979 1.4e-97 360.1 293 67.6
Ciclev10009067m.g Citrus clementina HOM05D004279 ORTHO05D004979 3.2e-97 359.0 286 66.4
AL8G29740 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 4.2e-97 358.6 292 65.8
Sc16g0006820 Simmondsia chinensis HOM05D004279 ORTHO05D004979 4.2e-97 358.6 300 65.0
CARHR267680 Cardamine hirsuta HOM05D004279 ORTHO05D004979 7.2e-97 357.8 291 66.7
Phvul.005G085300 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 1.2e-96 357.1 293 67.2
VMungo1080G0833 Vigna mungo HOM05D004279 ORTHO05D004979 1.2e-96 357.1 293 67.2
Carub.0008s1473 Capsella rubella HOM05D004279 ORTHO05D004979 2.1e-96 356.3 292 65.8
Medtr2g080130 Medicago truncatula HOM05D004279 ORTHO05D004979 2.1e-96 356.3 290 67.2
Potri.011G128300 Populus trichocarpa HOM05D004279 ORTHO05D004979 3.6e-96 355.5 290 64.1
A02p10310 Brassica napus HOM05D004279 ORTHO05D004979 4.6e-96 355.1 292 65.8
BcaC09g48518 Brassica carinata HOM05D004279 ORTHO05D004979 6.1e-96 354.8 291 66.3
Aa31LG8G2770 Aethionema arabicum HOM05D004279 ORTHO05D004979 7.9e-96 354.4 291 66.0
BolC2t07801H Brassica oleracea HOM05D004279 ORTHO05D004979 7.9e-96 354.4 292 65.4
BraA02t06098Z Brassica rapa HOM05D004279 ORTHO05D004979 7.9e-96 354.4 292 65.4
Thhalv10021257m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 1.0e-95 354.0 291 66.3
BolC1t04855H Brassica oleracea HOM05D004279 ORTHO05D004979 1.4e-95 353.6 291 66.3
CARHR090590 Cardamine hirsuta HOM05D004279 ORTHO05D004979 1.4e-95 353.6 291 66.0
Sp6g16410 Schrenkiella parvula HOM05D004279 ORTHO05D004979 1.4e-95 353.6 292 65.8
Aa31LG3G10340 Aethionema arabicum HOM05D004279 ORTHO05D004979 2.3e-95 352.8 293 65.5
AT3G15530 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 3.9e-95 352.1 291 65.6
A05p33880 Brassica napus HOM05D004279 ORTHO05D004979 3.9e-95 352.1 291 65.6
Carub.0003s1526 Capsella rubella HOM05D004279 ORTHO05D004979 3.9e-95 352.1 291 65.6
Sp3g13790 Schrenkiella parvula HOM05D004279 ORTHO05D004979 3.9e-95 352.1 291 65.6
THA.LOC104810491 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 3.9e-95 352.1 291 66.0
AL3G28110 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 6.7e-95 351.3 291 65.6
BcaB06g29588 Brassica carinata HOM05D004279 ORTHO05D004979 8.8e-95 350.9 292 65.1
C02p17040 Brassica napus HOM05D004279 ORTHO05D004979 1.1e-94 350.5 292 65.4
BraA05t22210Z Brassica rapa HOM05D004279 ORTHO05D004979 1.1e-94 350.5 291 65.6
BcaB04g20920 Brassica carinata HOM05D004279 ORTHO05D004979 1.5e-94 350.1 291 65.3
Eucgr.F03342 Eucalyptus grandis HOM05D004279 ORTHO05D004979 1.9e-94 349.7 293 64.2
BcaC05g28964 Brassica carinata HOM05D004279 ORTHO05D004979 2.5e-94 349.4 291 64.9
C05p51590 Brassica napus HOM05D004279 ORTHO05D004979 2.5e-94 349.4 291 64.9
BolC5t33846H Brassica oleracea HOM05D004279 ORTHO05D004979 2.5e-94 349.4 291 64.9
BraA01t03905Z Brassica rapa HOM05D004279 ORTHO05D004979 1.3e-93 347.1 273 68.5
Lalb_Chr25g0286631 Lupinus albus HOM05D004279 ORTHO05D004979 1.7e-93 346.7 290 66.2
BcaB05g22132 Brassica carinata HOM05D004279 ORTHO05D004979 2.8e-93 345.9 292 64.7
C01p48920 Brassica napus HOM05D004279 ORTHO05D004979 2.8e-93 345.9 273 68.1
A01p38550 Brassica napus HOM05D004279 ORTHO05D004979 4.8e-93 345.1 273 68.1
ECA246G0789 Erigeron canadensis HOM05D004279 ORTHO05D004979 1.1e-92 344.0 244 72.5
Lalb_Chr01g0016991 Lupinus albus HOM05D004279 ORTHO05D004979 3.1e-92 342.4 296 64.9
BcaC03g14314 Brassica carinata HOM05D004279 ORTHO05D004979 4.5e-91 338.6 280 65.0
THA.LOC104799915 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 4.5e-91 338.6 285 65.3
SGA_v2.0_scaffold73G24305 Striga asiatica HOM05D004279 ORTHO05D004979 7.7e-91 337.8 294 60.5
Ah.06g183670 Amaranthus hybridus HOM05D004279 ORTHO05D004979 2.1e-88 329.7 307 57.3
Glyma.06G249400 Glycine max HOM05D004279 ORTHO05D004979 2.3e-87 326.2 296 62.5
Glyma.12G148500 Glycine max HOM05D004279 ORTHO05D004979 3.9e-87 325.5 295 62.4
SHI28037 Sapria himalayana HOM05D004279 ORTHO05D004979 8.8e-87 324.3 286 59.8
THA.LOC104818054 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 2.0e-86 323.2 291 61.9
Phvul.011G148200 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 3.7e-85 318.9 295 62.4
AUR62015623 Chenopodium quinoa HOM05D004279 ORTHO05D004979 6.3e-85 318.2 306 55.9
AUR62029338 Chenopodium quinoa HOM05D004279 ORTHO05D004979 1.4e-84 317.0 306 56.2
HPP92_016704 Vanilla planifolia HOM05D004279 ORTHO05D004979 9.1e-84 314.3 295 59.7
EL10Ac4g08091 Beta vulgaris HOM05D004279 ORTHO05D004979 1.5e-83 313.5 310 54.5
VMungo1127G1925 Vigna mungo HOM05D004279 ORTHO05D004979 1.1e-81 307.4 295 60.3
GSVIVG01014410001 Vitis vinifera HOM05D004279 ORTHO05D004979 1.1e-78 297.4 193 78.8
SHI18877 Sapria himalayana HOM05D004279 ORTHO05D004979 1.5e-78 297.0 250 62.0
Glyma.13G280900 Glycine max HOM05D004279 ORTHO05D004979 1.7e-74 283.5 293 56.7
Thhalv10014468m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 1.2e-67 260.8 216 67.6
SHI27994 Sapria himalayana HOM05D004279 ORTHO05D004979 1.1e-65 254.2 266 51.9
ATR0693G409 Amborella trichopoda HOM05D004279 ORTHO05D004979 3.0e-63 246.1 272 51.5
HanXRQChr08g0235651 Helianthus annuus HOM05D004279 ORTHO05D004979 1.1e-60 237.7 152 77.0
SHI27891 Sapria himalayana HOM05D004279 ORTHO05D004979 7.2e-57 224.9 253 49.0
SHI27902 Sapria himalayana HOM05D004279 ORTHO05D004979 8.0e-56 221.5 252 50.4
CAN.G162.92 Capsicum annuum HOM05D004279 ORTHO05D004979 9.8e-54 214.5 144 73.6
Mapoly0019s0089 Marchantia polymorpha HOM05D004279 ORTHO05D004979 2.2e-53 213.4 278 46.0
SHI28023 Sapria himalayana HOM05D004279 ORTHO05D004979 1.7e-45 187.2 268 45.1
HanXRQChr08g0235661 Helianthus annuus HOM05D004279 ORTHO05D004979 1.2e-40 171.0 131 69.5
VMungo1127G2040 Vigna mungo HOM05D004279 ORTHO05D004979 6.2e-40 168.7 152 60.5
Atru.chr2.2812 Acer truncatum HOM05D004279 ORTHO05D004979 3.1e-39 166.4 124 68.5
Atru.chr2.2813 Acer truncatum HOM05D004279 ORTHO05D004979 2.4e-28 130.2 101 67.3
Haze_01531 Corylus avellana HOM05D004279 ORTHO05D004979 5.4e-28 129.0 114 60.5
QL06p019554 Quercus lobata HOM05D004279 ORTHO05D004979 2.3e-26 123.6 87 73.6
Haze_12044 Corylus avellana HOM05D004279 ORTHO05D004979 8.6e-26 121.7 112 59.8
CBR_g24389 Chara braunii HOM05D004279 ORTHO05D004979 1.2e-22 111.3 322 27.0
Haze_10444 Corylus avellana HOM05D004279 ORTHO05D004979 1.2e-22 111.3 98 62.2
Haze_13283 Corylus avellana HOM05D004279 ORTHO05D004979 1.7e-13 80.9 86 57.0
Haze_06332 Corylus avellana HOM05D004279 ORTHO05D004979 2.2e-13 80.5 72 58.3
SHI28022 Sapria himalayana HOM05D004279 ORTHO05D004979 1.8e-07 60.8 53 52.8
SHI26932 Sapria himalayana HOM05D009124 ORTHO05D012381 2.4e-07 60.5 69 47.8


User provided reference genes

Program Settings