Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022308 Camellia sinensis var. sinensis HOM05D005262 ORTHO05D006590 1.8e-102 375.9 189 100.0
Dinv34128 Davidia involucrata HOM05D005262 ORTHO05D006590 6.7e-94 347.4 189 91.5
QL03p069106 Quercus lobata HOM05D005262 ORTHO05D006590 1.3e-89 333.2 188 86.7
QL93p1999_0168 Quercus lobata HOM05D005262 ORTHO05D006590 1.3e-89 333.2 188 86.7
CiPaw.05G130500 Carya illinoinensis HOM05D005262 ORTHO05D006590 9.4e-88 327.0 186 86.0
CAN.G293.9 Capsicum annuum HOM05D005262 ORTHO05D006590 6.1e-87 324.3 189 84.1
Solyc07g017410.3 Solanum lycopersicum HOM05D005262 ORTHO05D006590 1.4e-86 323.2 189 84.1
Sopen07g006120 Solanum pennellii HOM05D005262 ORTHO05D006590 1.4e-86 323.2 189 84.1
PGSC0003DMG400009555 Solanum tuberosum HOM05D005262 ORTHO05D006590 1.4e-86 323.2 189 84.1
GSVIVG01005152001 Vitis vinifera HOM05D005262 ORTHO05D006590 3.0e-86 322.0 188 86.2
GSVIVG01012217001 Vitis vinifera HOM05D005262 ORTHO05D006590 6.8e-86 320.9 189 85.2
Hma1.2p1_1954F.1_g308920 Hydrangea macrophylla HOM05D005262 ORTHO05D006590 1.5e-85 319.7 207 78.3
Sc04g0007950 Simmondsia chinensis HOM05D005262 ORTHO05D006590 1.5e-85 319.7 189 83.1
Nitab4.5_0001147g0090 Nicotiana tabacum HOM05D005262 ORTHO05D006590 2.6e-85 318.9 189 82.5
Nitab4.5_0005903g0020 Nicotiana tabacum HOM05D005262 ORTHO05D006590 4.4e-85 318.2 189 83.1
ClCG00G005120 Citrullus lanatus HOM05D005262 ORTHO05D006590 7.5e-85 317.4 186 82.8
ClCG05G024080 Citrullus lanatus HOM05D005262 ORTHO05D006590 7.5e-85 317.4 186 82.8
Cpa.g.sc57.36 Carica papaya HOM05D005262 ORTHO05D006590 1.1e-83 313.5 189 81.0
Lj8C474T0 Lonicera japonica HOM05D005262 ORTHO05D006590 5.4e-83 311.2 187 82.9
Oeu054855.1 Olea europaea HOM05D005262 ORTHO05D006590 9.1e-83 310.5 186 81.7
TWI23G0893 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 9.1e-83 310.5 189 80.4
Cfa008943 Carpinus fangiana HOM05D005262 ORTHO05D006590 1.2e-82 310.1 189 82.0
Lj7A251G27 Lonicera japonica HOM05D005262 ORTHO05D006590 2.7e-82 308.9 187 81.8
Sed0024226 Sechium edule HOM05D005262 ORTHO05D006590 2.7e-82 308.9 187 80.2
MELO3C012117.2 Cucumis melo HOM05D005262 ORTHO05D006590 7.7e-82 307.4 186 80.6
TWI59G0657 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 7.7e-82 307.4 189 79.9
TAR496G0001 Trochodendron aralioides HOM05D005262 ORTHO05D006590 1.0e-81 307.0 185 80.5
TAR629G1254 Trochodendron aralioides HOM05D005262 ORTHO05D006590 1.0e-81 307.0 185 80.5
Rhsim09G0138500 Rhododendron simsii HOM05D005262 ORTHO05D006590 1.7e-81 306.2 185 82.2
Peaxi162Scf00320g00123 Petunia axillaris HOM05D005262 ORTHO05D006590 3.8e-81 305.1 204 76.0
MD07G1136300 Malus domestica HOM05D005262 ORTHO05D006590 6.6e-81 304.3 187 80.7
Thecc.10G075900 Theobroma cacao HOM05D005262 ORTHO05D006590 1.9e-80 302.8 189 81.5
CsaV3_5G032960 Cucumis sativus L. HOM05D005262 ORTHO05D006590 4.2e-80 301.6 186 79.6
Prupe.2G171300 Prunus persica HOM05D005262 ORTHO05D006590 7.2e-80 300.8 187 80.7
Lj7C254T2 Lonicera japonica HOM05D005262 ORTHO05D006590 9.5e-80 300.4 188 80.9
Atru.chr11.1609 Acer truncatum HOM05D005262 ORTHO05D006590 4.7e-79 298.1 185 77.8
Lj8C444T0 Lonicera japonica HOM05D005262 ORTHO05D006590 8.0e-79 297.4 209 73.7
MD01G1063000 Malus domestica HOM05D005262 ORTHO05D006590 8.0e-79 297.4 187 78.6
PSO063G7616 Papaver somniferum HOM05D005262 ORTHO05D006590 3.0e-78 295.4 189 75.7
TAR365G0711 Trochodendron aralioides HOM05D005262 ORTHO05D006590 3.0e-78 295.4 190 77.4
Ciclev10032849m.g Citrus clementina HOM05D005262 ORTHO05D006590 5.2e-78 294.7 189 76.2
Cc00_g16620 Coffea canephora HOM05D005262 ORTHO05D006590 5.2e-78 294.7 189 75.1
Aqoxy2G00811 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 6.8e-78 294.3 189 75.7
Duzib114G0995 Durio zibethinus HOM05D005262 ORTHO05D006590 1.2e-77 293.5 189 78.8
PSO832G0345 Papaver somniferum HOM05D005262 ORTHO05D006590 2.0e-77 292.7 189 74.6
SGA_v2.0_scaffold25G10746 Striga asiatica HOM05D005262 ORTHO05D006590 4.4e-77 291.6 186 76.9
Aqoxy1G02417 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 9.8e-77 290.4 189 75.7
Migut.O00263 Erythranthe guttata HOM05D005262 ORTHO05D006590 1.3e-76 290.0 182 78.0
PGR102G3250 Punica granatum HOM05D005262 ORTHO05D006590 2.8e-76 288.9 185 77.3
HPP92_008614 Vanilla planifolia HOM05D005262 ORTHO05D006590 1.1e-75 287.0 187 74.3
DCAR_013139 Daucus carota HOM05D005262 ORTHO05D006590 2.4e-75 285.8 186 75.3
SGA_v2.0_scaffold90G27753 Striga asiatica HOM05D005262 ORTHO05D006590 1.6e-74 283.1 186 74.7
HanXRQChr15g0476911 Helianthus annuus HOM05D005262 ORTHO05D006590 2.0e-74 282.7 187 73.8
Gohir.D04G003700 Gossypium hirsutum HOM05D005262 ORTHO05D006590 3.5e-74 282.0 189 76.7
Gorai.012G004900 Gossypium raimondii HOM05D005262 ORTHO05D006590 3.5e-74 282.0 189 76.7
AUR62032822 Chenopodium quinoa HOM05D005262 ORTHO05D006590 5.9e-74 281.2 187 72.7
QL07p005102 Quercus lobata HOM05D005262 ORTHO05D006590 5.9e-74 281.2 159 86.2
MSTRG.11557 Avicennia marina HOM05D005262 ORTHO05D006590 2.9e-73 278.9 186 72.6
FAN26G2856 Fragaria x ananassa HOM05D005262 ORTHO05D006590 2.9e-73 278.9 186 74.7
Gohir.A05G412300 Gossypium hirsutum HOM05D005262 ORTHO05D006590 3.8e-73 278.5 189 75.7
ECA246G3166 Erigeron canadensis HOM05D006399 ORTHO05D007988 5.0e-73 278.1 187 70.6
Os12g0209100 Oryza sativa ssp. japonica HOM05D005262 ORTHO05D006590 8.6e-73 277.3 182 73.1
FAN19G1549 Fragaria x ananassa HOM05D005262 ORTHO05D006590 1.9e-72 276.2 186 74.7
FAN23G1362 Fragaria x ananassa HOM05D005262 ORTHO05D006590 3.3e-72 275.4 186 74.7
Lj6g0009238 Lotus japonicus HOM05D005262 ORTHO05D006590 3.3e-72 275.4 189 70.9
Potri.010G165500 Populus trichocarpa HOM05D005262 ORTHO05D006590 4.3e-72 275.0 184 73.4
EL10Ac8g18975 Beta vulgaris HOM05D005262 ORTHO05D006590 7.3e-72 274.2 182 73.1
Nn4g23238 Nelumbo nucifera HOM05D005262 ORTHO05D006590 7.3e-72 274.2 152 88.8
Gohir.A10G054500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.6e-71 273.1 189 74.6
FvH4_1g30250 Fragaria vesca HOM05D005262 ORTHO05D006590 2.8e-71 272.3 185 74.1
Lj2g0009005 Lotus japonicus HOM05D005262 ORTHO05D006590 3.6e-71 271.9 189 71.4
Ca_02973_v3 Cicer arietinum L. HOM05D005262 ORTHO05D006590 6.1e-71 271.2 189 73.5
HanXRQChr17g0545311 Helianthus annuus HOM05D005262 ORTHO05D006590 1.0e-70 270.4 184 71.2
Manes.01G033800 Manihot esculenta HOM05D005262 ORTHO05D006590 1.4e-70 270.0 188 71.8
Glyma.02G110400 Glycine max HOM05D005262 ORTHO05D006590 3.1e-70 268.9 189 73.0
Glyma.01G052200 Glycine max HOM05D005262 ORTHO05D006590 4.0e-70 268.5 189 72.5
CANSAT80G0446 Cannabis sativa HOM05D005262 ORTHO05D006590 3.4e-69 265.4 176 72.7
Gorai.011G060300 Gossypium raimondii HOM05D005262 ORTHO05D006590 3.4e-69 265.4 178 75.3
Sabra10G0125800 Salix brachista HOM05D005262 ORTHO05D006590 4.4e-69 265.0 206 67.5
ATR0810G029 Amborella trichopoda HOM05D005262 ORTHO05D006590 5.8e-69 264.6 187 70.1
VMungo1215G2947 Vigna mungo HOM05D005262 ORTHO05D006590 1.3e-68 263.5 189 70.4
Lalb_Chr12g0202851 Lupinus albus HOM05D005262 ORTHO05D006590 2.2e-68 262.7 189 69.3
Hund04408 Selenicereus undatus HOM05D005262 ORTHO05D006590 2.2e-68 262.7 271 54.2
TPR.G4647 Trifolium pratense HOM05D005262 ORTHO05D006590 2.2e-68 262.7 189 69.3
Haze_11969 Corylus avellana HOM05D001063 ORTHO05D000986 1.9e-67 259.6 157 82.2
Zm00001eb163570 Zea mays HOM05D005262 ORTHO05D006590 1.9e-67 259.6 185 68.6
Psat1g094200 Pisum sativum HOM05D005262 ORTHO05D006590 2.4e-67 259.2 189 70.4
COL.COLO4_28415 Corchorus olitorius HOM05D005262 ORTHO05D006590 3.2e-67 258.8 178 72.5
Phvul.003G046600 Phaseolus vulgaris HOM05D005262 ORTHO05D006590 3.2e-67 258.8 189 69.8
arahy.Tifrunner.gnm1.ann1.EK09V6 Arachis hypogaea HOM05D005262 ORTHO05D006590 9.2e-67 257.3 203 66.5
arahy.Tifrunner.gnm1.ann1.XG4VM3 Arachis hypogaea HOM05D005262 ORTHO05D006590 1.2e-66 256.9 203 66.0
Lsat_1_v5_gn_3_51960 Lactuca sativa HOM05D005262 ORTHO05D006590 1.6e-66 256.5 182 66.5
unitig_749.g14151 Utricularia gibba HOM05D005262 ORTHO05D006590 1.6e-66 256.5 182 67.0
Medtr2g087760 Medicago truncatula HOM05D005262 ORTHO05D006590 1.5e-64 250.0 189 66.7
Medtr8g006800 Medicago truncatula HOM05D005262 ORTHO05D006590 1.9e-64 249.6 189 66.1
CDE02G1435 Ceratophyllum demersum HOM05D005262 ORTHO05D006590 1.6e-63 246.5 188 65.4
SalBow6G1526 Salvia bowleyana HOM05D005262 ORTHO05D006590 2.8e-63 245.7 182 64.8
Eucgr.I00218 Eucalyptus grandis HOM05D005262 ORTHO05D006590 6.2e-63 244.6 165 75.2
AUR62005827 Chenopodium quinoa HOM05D006399 ORTHO05D007988 1.3e-60 236.9 191 62.3
SEGI_18406 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 3.2e-59 232.3 178 62.9
THA.LOC104818198 Tarenaya hassleriana HOM05D005262 ORTHO05D006590 5.4e-59 231.5 186 60.2
vmacro10351 Vaccinium macrocarpon HOM05D005262 ORTHO05D006590 4.6e-58 228.4 185 68.1
Aa31LG7G8380 Aethionema arabicum HOM05D005262 ORTHO05D006590 4.7e-55 218.4 185 58.4
CAN.G228.3 Capsicum annuum HOM05D005262 ORTHO05D006590 3.1e-54 215.7 207 58.5
CARHR025210 Cardamine hirsuta HOM05D005262 ORTHO05D006590 2.6e-53 212.6 185 56.8
Carub.0001s2427 Capsella rubella HOM05D005262 ORTHO05D006590 2.9e-52 209.1 185 55.7
AL1G38960 Arabidopsis lyrata HOM05D005262 ORTHO05D006590 1.4e-51 206.8 185 55.7
Thhalv10008835m.g Eutrema salsugineum HOM05D005262 ORTHO05D006590 1.4e-51 206.8 185 56.2
Sp1g22060 Schrenkiella parvula HOM05D005262 ORTHO05D006590 2.7e-50 202.6 185 55.1
AT1G26750 Arabidopsis thaliana HOM05D005262 ORTHO05D006590 7.8e-50 201.1 185 55.1
A07p13080 Brassica napus HOM05D005262 ORTHO05D006590 2.5e-48 196.1 185 54.1
RcHm_v2.0_Chr6g0271051 Rosa chinensis HOM05D005262 ORTHO05D006590 5.6e-48 194.9 175 62.9
BraA07t29079Z Brassica rapa HOM05D005262 ORTHO05D006590 2.1e-47 193.0 185 54.1
BcaC06g35126 Brassica carinata HOM05D005262 ORTHO05D006590 1.8e-46 189.9 185 53.0
BcaB03g14087 Brassica carinata HOM05D005262 ORTHO05D006590 5.2e-46 188.3 185 52.4
C07p19560 Brassica napus HOM05D005262 ORTHO05D006590 5.2e-46 188.3 185 52.4
BolC7t42473H Brassica oleracea HOM05D005262 ORTHO05D006590 5.2e-46 188.3 185 52.4
C05p24220 Brassica napus HOM05D005262 ORTHO05D006590 2.9e-44 182.6 185 51.4
A09p40160 Brassica napus HOM05D005262 ORTHO05D006590 2.4e-43 179.5 185 50.3
BraA09t39514Z Brassica rapa HOM05D005262 ORTHO05D006590 2.4e-43 179.5 185 50.3
Eucgr.L00661 Eucalyptus grandis HOM05D005262 ORTHO05D006590 2.1e-42 176.4 106 84.9
BolC5t31158H Brassica oleracea HOM05D005262 ORTHO05D006590 4.7e-39 165.2 148 57.4
Gohir.D10G056500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 2.9e-36 156.0 155 58.7
ClCG08G001930 Citrullus lanatus HOM05D005262 ORTHO05D006590 1.1e-35 154.1 111 70.3
BcaC05g26391 Brassica carinata HOM05D005262 ORTHO05D006590 3.2e-35 152.5 185 47.0
Oeu021067.1 Olea europaea HOM05D005262 ORTHO05D006590 9.9e-29 131.0 78 78.2
Lj3C1034G10 Lonicera japonica HOM05D006399 ORTHO05D007988 1.1e-27 127.5 80 78.8
Haze_01349 Corylus avellana HOM05D005262 ORTHO05D006590 7.1e-27 124.8 86 76.7
RcHm_v2.0_Chr7g0220341 Rosa chinensis HOM05D005262 ORTHO05D006590 7.1e-27 124.8 84 73.8
SEGI_29332 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.5e-24 117.1 87 64.4
Glyma.11G251200 Glycine max HOM05D005262 ORTHO05D006590 4.8e-23 112.1 73 71.2
SEGI_36558 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.5e-21 107.1 76 65.8
SEGI_23137 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 2.0e-21 106.7 81 64.2
SEGI_39727 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 4.5e-21 105.5 76 64.5
Pp3c14_7320 Physcomitrium patens HOM05D005262 ORTHO05D006590 4.9e-20 102.1 155 38.1
RcHm_v2.0_Chr7g0220351 Rosa chinensis HOM05D005262 ORTHO05D006590 8.4e-20 101.3 61 82.0
AagrBONN_evm.TU.Sc2ySwM_228.1458 Anthoceros agrestis HOM05D005262 ORTHO05D006590 3.2e-19 99.4 151 39.1
CBR_g30169 Chara braunii HOM05D005262 ORTHO05D006590 3.5e-18 95.9 159 34.0
Mapoly0001s0053 Marchantia polymorpha HOM05D005262 ORTHO05D006590 5.1e-17 92.0 119 41.2
SHI20784 Sapria himalayana HOM05D005262 ORTHO05D006590 3.3e-16 89.4 97 52.6
Eucgr.L00657 Eucalyptus grandis HOM05D005262 ORTHO05D006590 4.5e-13 79.0 91 56.0
FAN15G0396 Fragaria x ananassa HOM05D005262 ORTHO05D006590 2.9e-12 76.3 66 63.6
Zm00001eb076020 Zea mays HOM05D005262 ORTHO05D444176 2.8e-07 59.7 45 60.0


User provided reference genes

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