Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022288 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 1.1e-178 629.8 313 100.0
CSS0003385 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 4.7e-177 624.4 313 99.4
Actinidia12605 Actinidia chinensis HOM05D006003 ORTHO05D007388 1.6e-145 519.6 316 82.6
Dinv13362 Davidia involucrata HOM05D006003 ORTHO05D007388 1.4e-144 516.5 313 81.5
vmacro11973 Vaccinium macrocarpon HOM05D006003 ORTHO05D007388 4.5e-143 511.5 318 80.8
Hma1.2p1_0050F.1_g028770 Hydrangea macrophylla HOM05D006003 ORTHO05D007388 5.1e-139 498.0 313 78.0
Rhsim06G0211900 Rhododendron simsii HOM05D006003 ORTHO05D007388 6.7e-139 497.7 332 75.6
TAR626G1650 Trochodendron aralioides HOM05D006003 ORTHO05D007388 2.2e-134 482.6 316 74.1
Atru.chr2.1938 Acer truncatum HOM05D006003 ORTHO05D007388 2.5e-130 469.2 313 73.2
Atru.chr2.1967 Acer truncatum HOM05D006003 ORTHO05D007388 2.2e-129 466.1 313 72.8
MD11G1270000 Malus domestica HOM05D006003 ORTHO05D007388 2.2e-129 466.1 312 72.1
Sabra11G0081200 Salix brachista HOM05D006003 ORTHO05D007388 8.2e-129 464.2 308 75.0
DCAR_019616 Daucus carota HOM05D006003 ORTHO05D007388 5.3e-128 461.5 316 71.5
Potri.011G104400 Populus trichocarpa HOM05D006003 ORTHO05D007388 9.1e-128 460.7 309 73.5
TWI39G0770 Tripterygium wilfordii HOM05D006003 ORTHO05D007388 1.5e-127 459.9 310 70.0
Ciclev10021233m.g Citrus clementina HOM05D006003 ORTHO05D007388 3.4e-127 458.8 313 71.2
Nitab4.5_0003230g0040 Nicotiana tabacum HOM05D006003 ORTHO05D007388 3.4e-127 458.8 313 71.6
Thecc.07G133000 Theobroma cacao HOM05D006003 ORTHO05D007388 3.4e-127 458.8 313 71.2
TAR624G1186 Trochodendron aralioides HOM05D006003 ORTHO05D007388 4.5e-127 458.4 360 63.9
Gorai.002G047000 Gossypium raimondii HOM05D006003 ORTHO05D007388 5.9e-127 458.0 313 71.6
Gohir.A01G047600 Gossypium hirsutum HOM05D006003 ORTHO05D007388 1.0e-126 457.2 313 71.6
Manes.15G098700 Manihot esculenta HOM05D006003 ORTHO05D007388 1.0e-126 457.2 308 70.8
Sabra11G0076500 Salix brachista HOM05D006003 ORTHO05D007388 1.7e-126 456.4 308 73.7
GSVIVG01014095001 Vitis vinifera HOM05D006003 ORTHO05D007388 1.7e-126 456.4 316 70.6
CAN.G375.51 Capsicum annuum HOM05D006003 ORTHO05D007388 2.9e-126 455.7 316 72.2
Eucgr.F03233 Eucalyptus grandis HOM05D006003 ORTHO05D007388 2.9e-126 455.7 316 70.6
Prupe.4G156300 Prunus persica HOM05D006003 ORTHO05D007388 5.5e-125 451.4 317 69.4
Nitab4.5_0000347g0030 Nicotiana tabacum HOM05D006003 ORTHO05D007388 1.0e-123 447.2 303 72.6
PGR031G3165 Punica granatum HOM05D006003 ORTHO05D007388 1.8e-123 446.4 313 69.3
CANSAT56G1876 Cannabis sativa HOM05D006003 ORTHO05D007388 8.8e-123 444.1 314 69.7
Cc05_g10700 Coffea canephora HOM05D006003 ORTHO05D007388 8.8e-123 444.1 316 69.9
PGSC0003DMG400007060 Solanum tuberosum HOM05D006003 ORTHO05D007388 2.0e-122 443.0 316 69.6
Prupe.4G156400 Prunus persica HOM05D006003 ORTHO05D007388 4.4e-122 441.8 315 67.9
Sopen07g030420 Solanum pennellii HOM05D006003 ORTHO05D007388 9.7e-122 440.7 316 69.6
HanXRQChr14g0439341 Helianthus annuus HOM05D006003 ORTHO05D007388 4.8e-121 438.3 310 67.7
Solyc07g062150.3 Solanum lycopersicum HOM05D006003 ORTHO05D007388 1.1e-120 437.2 316 69.6
Lj8A146G66 Lonicera japonica HOM05D006003 ORTHO05D007388 2.4e-120 436.0 301 73.4
Cpa.g.sc77.63 Carica papaya HOM05D006003 ORTHO05D007388 3.4e-119 432.2 313 68.4
AUR62019651 Chenopodium quinoa HOM05D006003 ORTHO05D007388 5.9e-119 431.4 312 67.0
Lj1C824T4 Lonicera japonica HOM05D006003 ORTHO05D007388 1.7e-118 429.9 281 76.2
PGR083G1570 Punica granatum HOM05D006003 ORTHO05D007388 1.7e-118 429.9 311 66.2
Eucgr.F01368 Eucalyptus grandis HOM05D006003 ORTHO05D007388 3.8e-118 428.7 314 67.5
MD11G1270100 Malus domestica HOM05D006003 ORTHO05D007388 5.0e-118 428.3 314 65.9
FAN16G0946 Fragaria x ananassa HOM05D006003 ORTHO05D007388 8.5e-118 427.6 315 66.7
HanXRQChr13g0389731 Helianthus annuus HOM05D006003 ORTHO05D007388 8.5e-118 427.6 310 68.1
FvH4_3g17730 Fragaria vesca HOM05D006003 ORTHO05D007388 1.4e-117 426.8 315 67.0
Haze_09249 Corylus avellana HOM05D006003 ORTHO05D007388 1.9e-117 426.4 312 67.3
MELO3C016117.2 Cucumis melo HOM05D006003 ORTHO05D007388 1.9e-117 426.4 310 66.1
Medtr2g073350 Medicago truncatula HOM05D006003 ORTHO05D007388 3.2e-117 425.6 310 66.8
CsaV3_4G008190 Cucumis sativus L. HOM05D006003 ORTHO05D007388 5.5e-117 424.9 310 65.5
FAN25G0059 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.6e-116 423.3 325 64.0
ClCG07G010140 Citrullus lanatus HOM05D006003 ORTHO05D007388 6.1e-116 421.4 310 64.8
Peaxi162Scf00111g01321 Petunia axillaris HOM05D006003 ORTHO05D007388 6.7e-115 417.9 283 72.8
Ah.04g164020 Amaranthus hybridus HOM05D006003 ORTHO05D007388 8.8e-115 417.5 312 65.1
MSTRG.6692 Avicennia marina HOM05D006003 ORTHO05D007388 8.8e-115 417.5 318 66.4
Ca_03928_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 3.3e-114 415.6 310 65.8
Ca_30126_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 3.3e-114 415.6 310 65.8
Sed0005123 Sechium edule HOM05D006003 ORTHO05D007388 3.3e-114 415.6 310 64.2
Lj3g0003080 Lotus japonicus HOM05D006003 ORTHO05D007388 4.4e-114 415.2 307 67.1
Lj3g0000598 Lotus japonicus HOM05D006003 ORTHO05D007388 1.7e-113 413.3 307 67.1
QL08p024148 Quercus lobata HOM05D006003 ORTHO05D007388 2.8e-113 412.5 312 65.4
Cfa019519 Carpinus fangiana HOM05D006003 ORTHO05D007388 3.7e-113 412.1 294 68.0
Oeu005377.2 Olea europaea HOM05D006003 ORTHO05D007388 3.7e-113 412.1 279 72.4
Gohir.D01G038300 Gossypium hirsutum HOM05D006003 ORTHO05D007388 1.4e-112 410.2 296 70.3
Glyma.12G234000 Glycine max HOM05D006003 ORTHO05D007388 1.8e-112 409.8 310 66.5
EL10Ac4g08418 Beta vulgaris HOM05D006003 ORTHO05D007388 7.0e-112 407.9 314 64.0
Oeu059254.1 Olea europaea HOM05D006003 ORTHO05D007388 9.1e-112 407.5 282 70.9
Migut.M00692 Erythranthe guttata HOM05D006003 ORTHO05D007388 1.2e-111 407.1 316 66.8
TPR.G12996 Trifolium pratense HOM05D006003 ORTHO05D007388 3.5e-111 405.6 275 70.9
Sc16g0007750 Simmondsia chinensis HOM05D006003 ORTHO05D007388 1.0e-110 404.1 280 66.8
Glyma.13G264900 Glycine max HOM05D006003 ORTHO05D007388 3.8e-110 402.1 308 65.6
Lalb_Chr20g0109151 Lupinus albus HOM05D006003 ORTHO05D007388 5.0e-110 401.7 314 65.6
HPP92_006378 Vanilla planifolia HOM05D006003 ORTHO05D007388 5.0e-110 401.7 307 64.2
FAN21G1616 Fragaria x ananassa HOM05D006003 ORTHO05D007388 2.5e-109 399.4 315 64.1
PSO541G5634 Papaver somniferum HOM05D006003 ORTHO05D007388 3.6e-108 395.6 327 59.9
Psat5g233200 Pisum sativum HOM05D006003 ORTHO05D007388 1.0e-107 394.0 310 63.9
PSO675G5422 Papaver somniferum HOM05D006003 ORTHO05D007388 1.4e-107 393.7 330 59.4
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 3.0e-107 392.5 311 63.7
SGA_v2.0_scaffold181G39767 Striga asiatica HOM05D006003 ORTHO05D007388 1.2e-106 390.6 326 61.7
Lsat_1_v5_gn_9_100380 Lactuca sativa HOM05D006003 ORTHO05D007388 1.5e-106 390.2 311 63.3
ECA240G1635 Erigeron canadensis HOM05D006003 ORTHO05D007388 1.3e-105 387.1 276 68.1
Dinv26706 Davidia involucrata HOM05D006003 ORTHO05D007388 9.1e-104 380.9 233 81.5
Duzib268G1415 Durio zibethinus HOM05D006003 ORTHO05D007388 9.1e-104 380.9 240 79.2
MD03G1247500 Malus domestica HOM05D006003 ORTHO05D007388 3.5e-103 379.0 276 68.1
MBI06_g08515_MAGBIO Magnolia biondii HOM05D006003 ORTHO05D007388 1.0e-102 377.5 282 65.2
Os09g0345700 Oryza sativa ssp. japonica HOM05D006003 ORTHO05D007388 5.0e-102 375.2 320 57.2
THA.LOC104813991 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 3.6e-100 369.0 314 58.9
SalBow8G3868 Salvia bowleyana HOM05D006003 ORTHO05D007388 8.8e-99 364.4 312 61.5
Nn6g34421 Nelumbo nucifera HOM05D006003 ORTHO05D007388 2.0e-98 363.2 240 74.2
CARHR072080 Cardamine hirsuta HOM05D006003 ORTHO05D007388 7.5e-98 361.3 307 59.9
ATR0602G094 Amborella trichopoda HOM05D006003 ORTHO05D007388 2.8e-97 359.4 277 64.3
AL2G38990 Arabidopsis lyrata HOM05D006003 ORTHO05D007388 2.8e-97 359.4 312 58.3
COL.COLO4_17472 Corchorus olitorius HOM05D006003 ORTHO05D007388 4.8e-97 358.6 313 60.4
AT1G78590 Arabidopsis thaliana HOM05D006003 ORTHO05D007388 9.1e-96 354.4 312 58.0
BraA07t31893Z Brassica rapa HOM05D006003 ORTHO05D007388 1.2e-95 354.0 312 58.0
Sp5g33680 Schrenkiella parvula HOM05D006003 ORTHO05D007388 1.2e-95 354.0 307 59.3
arahy.Tifrunner.gnm1.ann1.U60PIC Arachis hypogaea HOM05D006003 ORTHO05D007388 2.7e-95 352.8 310 59.4
BcaC08g47430 Brassica carinata HOM05D006003 ORTHO05D007388 2.7e-95 352.8 312 57.7
Thhalv10018897m.g Eutrema salsugineum HOM05D006003 ORTHO05D007388 2.7e-95 352.8 307 58.3
THA.LOC104808088 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 3.5e-95 352.4 311 58.2
A07p43860 Brassica napus HOM05D006003 ORTHO05D007388 4.5e-95 352.1 312 57.7
SHI27565 Sapria himalayana HOM05D006003 ORTHO05D007388 1.0e-94 350.9 253 66.8
C06p52490 Brassica napus HOM05D006003 ORTHO05D007388 1.3e-94 350.5 312 57.4
BolC6t40268H Brassica oleracea HOM05D006003 ORTHO05D007388 3.8e-94 349.0 312 57.1
BcaC03g15825 Brassica carinata HOM05D006003 ORTHO05D007388 8.6e-94 347.8 307 58.3
A02p22240 Brassica napus HOM05D006003 ORTHO05D007388 8.6e-94 347.8 307 58.3
Aa31LG4G2370 Aethionema arabicum HOM05D006003 ORTHO05D007388 1.9e-93 346.7 312 56.1
Carub.0002s2544 Capsella rubella HOM05D006003 ORTHO05D007388 1.9e-93 346.7 312 57.1
C02p35670 Brassica napus HOM05D006003 ORTHO05D007388 2.5e-93 346.3 307 58.0
BolC2t09587H Brassica oleracea HOM05D006003 ORTHO05D007388 2.5e-93 346.3 307 58.0
BraA02t07230Z Brassica rapa HOM05D006003 ORTHO05D007388 9.5e-93 344.4 307 58.0
CiPaw.11G156000 Carya illinoinensis HOM05D006003 ORTHO05D007388 2.1e-92 343.2 275 64.0
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 1.3e-89 334.0 266 62.0
CDE04G1397 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 2.2e-89 333.2 250 66.8
BcaB05g25146 Brassica carinata HOM05D006003 ORTHO05D007388 2.8e-89 332.8 299 57.5
Sc03g0010720 Simmondsia chinensis HOM05D006003 ORTHO05D007388 1.3e-86 323.9 291 57.0
Phvul.005G076600 Phaseolus vulgaris HOM05D006003 ORTHO05D007388 1.2e-82 310.8 221 69.7
SMO169G0094 Selaginella moellendorffii HOM05D006003 ORTHO05D007388 9.5e-77 291.2 276 52.9
Pp3c14_23600 Physcomitrium patens HOM05D006003 ORTHO05D007388 1.2e-76 290.8 279 52.3
Mapoly0214s0005 Marchantia polymorpha HOM05D006003 ORTHO05D007388 5.2e-75 285.4 316 48.4
CBR_g12698 Chara braunii HOM05D006003 ORTHO05D007388 1.0e-70 271.2 282 47.9
Zm00001eb098430 Zea mays HOM05D006003 ORTHO05D007388 1.1e-67 261.2 198 63.1
FAN11G1972 Fragaria x ananassa HOM05D006003 ORTHO05D007388 8.1e-52 208.4 191 55.0
MD03G1248900 Malus domestica HOM05D006003 ORTHO05D007388 3.1e-51 206.5 195 59.5
SalBow7G3240 Salvia bowleyana HOM05D006003 ORTHO05D007388 1.3e-46 191.0 170 55.9
RcHm_v2.0_Chr5g0029501 Rosa chinensis HOM05D006003 ORTHO05D007388 2.5e-45 186.8 135 67.4
MCO14G555 Micromonas commoda HOM05D006003 ORTHO05D007388 6.9e-43 178.7 279 40.9
AUR62039577 Chenopodium quinoa HOM05D006003 ORTHO05D007388 1.8e-38 164.1 109 67.9
RcHm_v2.0_Chr5g0029511 Rosa chinensis HOM05D006003 ORTHO05D007388 1.1e-35 154.8 114 66.7
Psat5g275400 Pisum sativum HOM05D006003 ORTHO05D007388 2.9e-25 120.2 113 51.3
PRCOL_00004450 Prasinoderma coloniale HOM05D006003 ORTHO05D007388 1.3e-12 78.2 276 29.7
CDE03G0511 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 3.7e-12 76.6 138 39.1


User provided reference genes

Program Settings