Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022283 Camellia sinensis var. sinensis HOM05D005131 ORTHO05D006645 8.0e-188 660.2 321 100.0
Actinidia37756 Actinidia chinensis HOM05D005131 ORTHO05D006645 4.1e-168 594.7 321 89.4
CiPaw.10G018800 Carya illinoinensis HOM05D005131 ORTHO05D006645 2.5e-165 585.5 320 85.3
vmacro07486 Vaccinium macrocarpon HOM05D005131 ORTHO05D006645 9.5e-165 583.6 321 86.0
GSVIVG01022599001 Vitis vinifera HOM05D005131 ORTHO05D006645 3.6e-164 581.6 321 85.4
HanXRQChr13g0398521 Helianthus annuus HOM05D005131 ORTHO05D006645 8.0e-164 580.5 315 85.4
Ciclev10012219m.g Citrus clementina HOM05D005131 ORTHO05D006645 1.7e-161 572.8 319 84.6
ECA233G5535 Erigeron canadensis HOM05D005131 ORTHO05D006645 2.9e-161 572.0 311 85.2
Lsat_1_v5_gn_6_33480 Lactuca sativa HOM05D005131 ORTHO05D006645 4.9e-161 571.2 327 82.0
Solyc06g007310.4 Solanum lycopersicum HOM05D005131 ORTHO05D006645 7.0e-160 567.4 314 85.4
Prupe.7G093300 Prunus persica HOM05D005131 ORTHO05D006645 1.6e-159 566.2 315 85.4
Sopen06g002230 Solanum pennellii HOM05D005131 ORTHO05D006645 1.6e-159 566.2 314 85.4
Sp5g09900 Schrenkiella parvula HOM05D005131 ORTHO05D006645 2.1e-159 565.8 321 83.5
MSTRG.5889 Avicennia marina HOM05D005131 ORTHO05D006645 2.7e-159 565.5 313 85.6
Glyma.19G200600 Glycine max HOM05D005131 ORTHO05D006645 2.7e-159 565.5 319 83.1
TWI74G0987 Tripterygium wilfordii HOM05D005131 ORTHO05D006645 3.5e-159 565.1 319 84.0
BcaC02g09261 Brassica carinata HOM05D005131 ORTHO05D006645 4.6e-159 564.7 321 83.5
PSO384G4687 Papaver somniferum HOM05D005131 ORTHO05D006645 4.6e-159 564.7 321 82.2
EL10Ac5g11853 Beta vulgaris HOM05D005131 ORTHO05D006645 6.0e-159 564.3 315 84.4
Potri.016G068400 Populus trichocarpa HOM05D005131 ORTHO05D006645 7.8e-159 563.9 315 84.4
AT3G52390 Arabidopsis thaliana HOM05D005131 ORTHO05D006645 1.0e-158 563.5 321 81.9
Nn2g14347 Nelumbo nucifera HOM05D005131 ORTHO05D006645 1.0e-158 563.5 317 84.9
Aqoxy2G00625 Aquilegia oxysepala HOM05D005131 ORTHO05D006645 1.3e-158 563.1 315 84.8
PSO339G6419 Papaver somniferum HOM05D005131 ORTHO05D006645 1.3e-158 563.1 321 82.6
VMungo1383G1979 Vigna mungo HOM05D005131 ORTHO05D006645 1.7e-158 562.8 317 83.0
Migut.J00690 Erythranthe guttata HOM05D005131 ORTHO05D006645 2.3e-158 562.4 312 84.9
TPR.G31287 Trifolium pratense HOM05D005131 ORTHO05D006645 2.3e-158 562.4 319 82.8
AL5G33050 Arabidopsis lyrata HOM05D005131 ORTHO05D006645 3.9e-158 561.6 321 81.9
Medtr7g106430 Medicago truncatula HOM05D005131 ORTHO05D006645 5.0e-158 561.2 319 81.8
MD12G1041900 Malus domestica HOM05D005131 ORTHO05D006645 8.6e-158 560.5 315 85.1
CARHR162160 Cardamine hirsuta HOM05D005131 ORTHO05D006645 1.9e-157 559.3 321 82.6
Ah.12g059320 Amaranthus hybridus HOM05D005131 ORTHO05D006645 2.5e-157 558.9 315 84.1
Ca_09063_v3 Cicer arietinum L. HOM05D005131 ORTHO05D006645 2.5e-157 558.9 319 81.5
FvH4_6g20480 Fragaria vesca HOM05D005131 ORTHO05D006645 2.5e-157 558.9 315 82.9
FAN05G1272 Fragaria x ananassa HOM05D005131 ORTHO05D006645 3.3e-157 558.5 315 82.5
Phvul.001G196500 Phaseolus vulgaris HOM05D005131 ORTHO05D006645 3.3e-157 558.5 319 82.1
Gohir.D09G129600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 4.3e-157 558.1 321 82.6
Eucgr.A02573 Eucalyptus grandis HOM05D005131 ORTHO05D006645 5.6e-157 557.8 316 82.9
Manes.08G034500 Manihot esculenta HOM05D005131 ORTHO05D006645 5.6e-157 557.8 317 81.7
FAN05G3424 Fragaria x ananassa HOM05D005131 ORTHO05D006645 7.3e-157 557.4 315 82.5
Manes.09G044500 Manihot esculenta HOM05D005131 ORTHO05D006645 7.3e-157 557.4 317 83.6
CANSAT64G0057 Cannabis sativa HOM05D005131 ORTHO05D006645 1.6e-156 556.2 317 82.6
QL07p027488 Quercus lobata HOM05D005131 ORTHO05D006645 2.1e-156 555.8 302 85.8
RcHm_v2.0_Chr3g0476361 Rosa chinensis HOM05D005131 ORTHO05D006645 3.6e-156 555.1 315 82.2
Cc06_g06690 Coffea canephora HOM05D005131 ORTHO05D006645 6.2e-156 554.3 313 83.4
Aa31LG10G7440 Aethionema arabicum HOM05D005131 ORTHO05D006645 8.1e-156 553.9 319 82.8
Cpa.g.sc104.11 Carica papaya HOM05D005131 ORTHO05D006645 8.1e-156 553.9 304 85.9
Haze_20155 Corylus avellana HOM05D005131 ORTHO05D006645 8.1e-156 553.9 297 88.2
Sc22g0002890 Simmondsia chinensis HOM05D005131 ORTHO05D006645 8.1e-156 553.9 313 84.0
CsaV3_3G038080 Cucumis sativus L. HOM05D005131 ORTHO05D006645 1.1e-155 553.5 320 82.2
PGR004G1515 Punica granatum HOM05D005131 ORTHO05D006645 1.4e-155 553.1 317 81.7
BcaB02g08573 Brassica carinata HOM05D005131 ORTHO05D006645 3.1e-155 552.0 314 83.4
Atru.chr8.1330 Acer truncatum HOM05D005131 ORTHO05D006645 8.9e-155 550.4 305 84.6
Duzib128G0735 Durio zibethinus HOM05D005131 ORTHO05D006645 1.2e-154 550.1 321 82.2
ClCG10G018240 Citrullus lanatus HOM05D005131 ORTHO05D006645 2.0e-154 549.3 317 82.6
Lj1g0022682 Lotus japonicus HOM05D005131 ORTHO05D006645 3.4e-154 548.5 314 82.2
Thecc.05G106400 Theobroma cacao HOM05D005131 ORTHO05D006645 3.4e-154 548.5 321 81.6
Gorai.006G148500 Gossypium raimondii HOM05D005131 ORTHO05D006645 4.4e-154 548.1 314 82.5
AUR62030719 Chenopodium quinoa HOM05D005131 ORTHO05D006645 2.9e-153 545.4 312 83.7
THA.LOC104803758 Tarenaya hassleriana HOM05D005131 ORTHO05D006645 4.9e-153 544.7 315 81.0
Hund10854 Selenicereus undatus HOM05D005131 ORTHO05D006645 6.4e-153 544.3 316 81.6
Rhsim03G0063800 Rhododendron simsii HOM05D005131 ORTHO05D006645 1.1e-152 543.5 321 83.2
Lalb_Chr20g0111311 Lupinus albus HOM05D005131 ORTHO05D006645 2.7e-151 538.9 299 83.6
Carub.0005s1875 Capsella rubella HOM05D005131 ORTHO05D006645 3.5e-151 538.5 305 82.6
BraA04t16401Z Brassica rapa HOM05D005131 ORTHO05D006645 7.8e-151 537.3 316 81.3
PGSC0003DMG401020557 Solanum tuberosum HOM05D005131 ORTHO05D006645 1.7e-150 536.2 298 85.2
C04p40630 Brassica napus HOM05D005131 ORTHO05D006645 2.3e-150 535.8 316 81.3
BolC4t25644H Brassica oleracea HOM05D005131 ORTHO05D006645 2.3e-150 535.8 316 81.3
Thhalv10010578m.g Eutrema salsugineum HOM05D005131 ORTHO05D006645 6.6e-150 534.3 305 82.3
Haze_20150 Corylus avellana HOM05D005131 ORTHO05D006645 8.6e-150 533.9 298 86.2
A04p07040 Brassica napus HOM05D005131 ORTHO05D006645 1.1e-149 533.5 315 81.0
Gohir.A09G133400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 1.6e-148 529.6 305 81.3
DCAR_009180 Daucus carota HOM05D005131 ORTHO05D006645 4.0e-147 525.0 298 82.2
Nitab4.5_0012238g0010 Nicotiana tabacum HOM05D005131 ORTHO05D006645 4.0e-147 525.0 319 80.3
COL.COLO4_29542 Corchorus olitorius HOM05D005131 ORTHO05D006645 2.0e-146 522.7 371 69.5
Sed0026420 Sechium edule HOM05D005131 ORTHO05D006645 2.0e-146 522.7 302 81.8
Os07g0158200 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 3.8e-145 518.5 310 78.1
TAR636G0548 Trochodendron aralioides HOM05D005131 ORTHO05D006645 9.2e-144 513.8 284 86.6
Hund14967 Selenicereus undatus HOM05D005131 ORTHO05D006645 3.0e-142 508.8 297 82.2
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 3.9e-142 508.4 291 81.8
FAN14G5766 Fragaria x ananassa HOM05D005131 ORTHO05D006645 9.9e-138 493.8 317 74.8
arahy.Tifrunner.gnm1.ann1.X3LXDK Arachis hypogaea HOM05D005131 ORTHO05D006645 3.8e-137 491.9 308 76.0
SEGI_21507 Sequoiadendron giganteum HOM05D005131 ORTHO05D006645 7.1e-136 487.6 317 70.7
Peaxi162Scf00012g02523 Petunia axillaris HOM05D005131 ORTHO05D006645 1.2e-135 486.9 314 76.8
CAN.G869.8 Capsicum annuum HOM05D005131 ORTHO05D006645 6.0e-135 484.6 265 86.4
ATR0697G267 Amborella trichopoda HOM05D005131 ORTHO05D006645 1.3e-134 483.4 294 76.5
Zm00001eb117460 Zea mays HOM05D005131 ORTHO05D006645 1.3e-134 483.4 299 75.9
SHI18412 Sapria himalayana HOM05D005131 ORTHO05D006645 1.1e-133 480.3 313 72.5
Dinv12349 Davidia involucrata HOM05D005131 ORTHO05D006645 1.5e-133 479.9 254 89.0
FAN02G0570 Fragaria x ananassa HOM05D005131 ORTHO05D006645 3.6e-132 475.3 270 82.6
Gohir.A13G054600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 5.8e-130 468.0 262 83.6
Gohir.A09G012800 Gossypium hirsutum HOM05D005131 ORTHO05D006645 2.9e-129 465.7 262 83.2
Mapoly0052s0020 Marchantia polymorpha HOM05D005131 ORTHO05D006645 3.2e-128 462.2 316 67.7
Gohir.A05G372400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 4.2e-128 461.8 262 83.2
Oeu035639.1 Olea europaea HOM05D005131 ORTHO05D006645 1.3e-126 456.8 254 85.0
Hma1.2p1_0079F.1_g041720 Hydrangea macrophylla HOM05D005131 ORTHO05D006645 1.1e-125 453.8 305 72.8
arahy.Tifrunner.gnm1.ann1.275XDC Arachis hypogaea HOM05D005131 ORTHO05D006645 2.8e-124 449.1 285 75.4
AagrBONN_evm.TU.Sc2ySwM_117.2339 Anthoceros agrestis HOM05D005131 ORTHO05D006645 2.6e-122 442.6 308 66.9
Nitab4.5_0000121g0080 Nicotiana tabacum HOM05D005131 ORTHO05D006645 7.9e-119 431.0 305 72.8
CAN.G741.26 Capsicum annuum HOM05D005131 ORTHO05D006645 2.4e-115 419.5 269 76.2
SMO334G0001 Selaginella moellendorffii HOM05D005131 ORTHO05D006645 4.2e-112 408.7 287 65.5
unitig_26.g9145 Utricularia gibba HOM05D005131 ORTHO05D006645 2.1e-111 406.4 258 76.0
AUR62036353 Chenopodium quinoa HOM05D005131 ORTHO05D006645 6.7e-110 401.4 234 82.1
Pp3c11_16390 Physcomitrium patens HOM05D005131 ORTHO05D006645 2.8e-108 396.0 317 58.7
MSTRG.18896 Avicennia marina HOM05D005131 ORTHO05D006645 8.2e-108 394.4 218 85.8
CBR_g41666 Chara braunii HOM05D005131 ORTHO05D006645 6.7e-102 374.8 315 58.4
MBI12_g38626_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 2.2e-100 369.8 222 78.4
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 1.7e-89 333.6 306 53.9
MCO14G398 Micromonas commoda HOM05D005131 ORTHO05D006645 1.3e-84 317.4 326 49.1
HPP92_012180 Vanilla planifolia HOM05D005131 ORTHO05D006645 2.6e-77 293.1 204 66.7
HPP92_013927 Vanilla planifolia HOM05D005131 ORTHO05D006645 8.3e-76 288.1 179 76.0
Haze_27322 Corylus avellana HOM05D005131 ORTHO05D006645 1.8e-75 287.0 298 51.3
PRCOL_00003277 Prasinoderma coloniale HOM05D005131 ORTHO05D006645 2.9e-73 279.6 288 45.8
MELO3C009548.2 Cucumis melo HOM05D000492 ORTHO05D000499 3.8e-73 279.3 170 79.4
HPP92_026830 Vanilla planifolia HOM05D005131 ORTHO05D006645 4.4e-69 265.8 165 75.8
CDE09G0133 Ceratophyllum demersum HOM05D005131 ORTHO05D006645 7.0e-67 258.5 170 72.9
MELO3C031004.2 Cucumis melo HOM05D005131 ORTHO05D006645 7.0e-67 258.5 145 84.1
HPP92_013928 Vanilla planifolia HOM05D005131 ORTHO05D006645 7.0e-59 231.9 132 81.8
Zm00001eb419840 Zea mays HOM05D005131 ORTHO05D006645 3.5e-58 229.6 184 62.0
Lj7A140G6 Lonicera japonica HOM05D005131 ORTHO05D006645 7.8e-58 228.4 182 65.4
Psat3g205680 Pisum sativum HOM05D005131 ORTHO05D006645 3.4e-53 213.0 117 84.6
Sabra16G0069400 Salix brachista HOM05D005131 ORTHO05D006645 5.8e-53 212.2 118 83.1
Zm00001eb002330 Zea mays HOM05D005131 ORTHO05D006645 7.0e-51 205.3 132 72.7
Cc04_g12370 Coffea canephora HOM05D005131 ORTHO05D006645 6.6e-49 198.7 108 87.0
MBI12_g38628_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 1.6e-47 194.1 104 87.5
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 5.4e-43 179.1 165 57.0
Zm00001eb083350 Zea mays HOM05D005131 ORTHO05D006645 5.2e-38 162.5 118 65.3
arahy.Tifrunner.gnm1.ann1.Y0MH84 Arachis hypogaea HOM05D005131 ORTHO05D006645 7.6e-37 158.7 172 51.7
Zm00001eb324820 Zea mays HOM05D005131 ORTHO05D006645 1.1e-35 154.8 105 68.6
Os08g0165800 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 8.6e-33 145.2 314 34.1
HPP92_012178 Vanilla planifolia HOM05D005131 ORTHO05D006645 1.5e-32 144.4 106 68.9
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 3.3e-32 143.3 324 34.3
Psat0s6170g0080 Pisum sativum HOM05D005131 ORTHO05D006645 4.4e-29 132.9 73 84.9
Psat3g205720 Pisum sativum HOM05D005131 ORTHO05D006645 2.5e-24 117.1 71 78.9
Os07g0157900 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 7.3e-24 115.5 119 53.8
MD14G1041100 Malus domestica HOM05D005131 ORTHO05D006645 1.8e-22 110.9 301 30.6
Pp3c7_11890 Physcomitrium patens HOM05D005131 ORTHO05D006645 2.1e-18 97.4 95 52.6
Zm00001eb429030 Zea mays HOM05D005131 ORTHO05D006645 3.5e-18 96.7 69 65.2
Zm00001eb324830 Zea mays HOM05D005131 ORTHO05D006645 1.0e-17 95.1 69 65.2
MCO10G056 Micromonas commoda HOM05D005131 ORTHO05D006645 2.0e-13 80.9 165 30.9
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 2.2e-12 77.4 294 26.9
A01p30550 Brassica napus HOM05D005131 ORTHO05D033215 3.8e-12 76.6 42 85.7
BraA01t03187Z Brassica rapa HOM05D005131 ORTHO05D033215 3.8e-12 76.6 42 85.7
TAR633G0521 Trochodendron aralioides HOM05D005131 ORTHO05D006645 6.4e-12 75.9 51 62.7
BolC1t02473H Brassica oleracea HOM05D005131 ORTHO05D033215 1.1e-11 75.1 42 83.3
Zm00001eb392810 Zea mays HOM05D005131 ORTHO05D006645 1.4e-11 74.7 55 63.6
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 9.3e-11 72.0 283 26.9
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 2.1e-10 70.9 307 25.7
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.5e-10 70.1 288 25.3
Lsat_1_v5_gn_4_57340 Lactuca sativa HOM05D004773 ORTHO05D005943 3.5e-10 70.1 287 25.1
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 4.6e-10 69.7 309 25.9
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 6.0e-10 69.3 308 26.3
Migut.M01200 Erythranthe guttata HOM05D004773 ORTHO05D005943 1.0e-09 68.6 291 25.8
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.0e-09 67.0 288 25.3
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.0e-09 67.0 288 25.3
FAN02G0119 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.9e-09 66.6 288 25.0
FAN09G4020 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.9e-09 66.6 288 25.0
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 5.1e-09 66.2 288 25.3
CAN.G1767.1 Capsicum annuum HOM05D000162 ORTHO05D000090 8.7e-09 65.5 78 48.7
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 8.7e-09 65.5 288 25.3
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 8.7e-09 65.5 288 25.3
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 1.1e-08 65.1 210 28.1
HPP92_001431 Vanilla planifolia HOM05D004773 ORTHO05D005943 1.9e-08 64.3 301 25.2
FvH4_2g19461 Fragaria vesca HOM05D005131 ORTHO05D006645 3.3e-08 63.5 63 54.0
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.3e-08 63.5 210 28.1
Thecc.05G229300 Theobroma cacao HOM05D004773 ORTHO05D005943 3.3e-08 63.5 309 24.9
FAN02G4326 Fragaria x ananassa HOM05D004773 ORTHO05D005943 5.6e-08 62.8 218 28.0
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 7.4e-08 62.4 304 26.0
Eucgr.F01970 Eucalyptus grandis HOM05D004773 ORTHO05D005943 9.6e-08 62.0 195 30.3
FAN09G2979 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.6e-07 61.2 207 29.0
THA.LOC104802901 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 2.1e-07 60.8 308 23.4
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 2.8e-07 60.5 287 25.4
TAR317G0002 Trochodendron aralioides HOM05D004773 ORTHO05D005943 2.8e-07 60.5 302 24.2
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 3.7e-07 60.1 198 28.8
THA.LOC104802900 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 1.1e-06 58.5 296 25.7
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 1.8e-06 57.8 121 34.7
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 2.4e-06 57.4 309 24.9
ECA234G0571 Erigeron canadensis HOM05D000140 ORTHO05D000087 6.9e-06 55.8 286 23.4


User provided reference genes

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