Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022265 Camellia sinensis var. sinensis HOM05D008235 ORTHO05D009358 0.0e+00 1107.4 553 100.0
CSS0049607 Camellia sinensis var. sinensis HOM05D008235 ORTHO05D009358 5.3e-288 993.8 503 98.0
Actinidia35979 Actinidia chinensis HOM05D008235 ORTHO05D009358 1.4e-139 500.7 569 53.3
Actinidia34601 Actinidia chinensis HOM05D008235 ORTHO05D009358 1.1e-131 474.6 573 52.9
Dinv22732 Davidia involucrata HOM05D008235 ORTHO05D009358 1.8e-107 394.0 513 47.6
RhsimUnG0195000 Rhododendron simsii HOM05D008235 ORTHO05D009358 1.6e-106 391.0 697 42.0
Rhsim09G0027400 Rhododendron simsii HOM05D008235 ORTHO05D009358 8.3e-100 368.6 744 39.4
vmacro00622 Vaccinium macrocarpon HOM05D008235 ORTHO05D009358 6.8e-94 349.0 512 47.9
Dinv44188 Davidia involucrata HOM05D008235 ORTHO05D009358 1.2e-87 328.2 590 41.2
Haze_01504 Corylus avellana HOM05D008235 ORTHO05D009358 1.3e-65 255.0 547 35.8
QL10p049494 Quercus lobata HOM05D008235 ORTHO05D009358 6.8e-62 242.7 596 34.6
GSVIVG01010760001 Vitis vinifera HOM05D008235 ORTHO05D009358 3.8e-60 236.9 520 35.2
TAR365G0029 Trochodendron aralioides HOM05D008235 ORTHO05D009358 2.5e-56 224.2 543 35.2
Potri.017G029800 Populus trichocarpa HOM05D008235 ORTHO05D009358 1.5e-53 214.9 587 32.0
Potri.007G128500 Populus trichocarpa HOM05D008235 ORTHO05D009358 3.2e-51 207.2 591 32.3
Duzib212G0859 Durio zibethinus HOM05D008235 ORTHO05D009358 4.2e-51 206.8 602 32.6
Thecc.04G179500 Theobroma cacao HOM05D008235 ORTHO05D009358 3.3e-48 197.2 603 31.7
Nn1g09629 Nelumbo nucifera HOM05D008235 ORTHO05D009358 1.3e-47 195.3 641 32.1
Sabra07G0105000 Salix brachista HOM05D008235 ORTHO05D009358 5.3e-46 189.9 609 30.5
TAR636G0036 Trochodendron aralioides HOM05D008235 ORTHO05D009358 2.0e-45 188.0 478 31.6
Sabra17G0019200 Salix brachista HOM05D008235 ORTHO05D009358 9.9e-45 185.7 505 31.7
Gorai.005G128900 Gossypium raimondii HOM05D008235 ORTHO05D009358 1.3e-41 175.3 582 30.1
Ciclev10019428m.g Citrus clementina HOM05D008235 ORTHO05D009358 3.0e-41 174.1 592 31.2
Gohir.D02G114100 Gossypium hirsutum HOM05D008235 ORTHO05D009358 1.5e-40 171.8 600 30.2
MD04G1040900 Malus domestica HOM05D008235 ORTHO05D009358 1.9e-40 171.4 467 33.6
Gorai.011G142400 Gossypium raimondii HOM05D008235 ORTHO05D009358 2.8e-39 167.5 589 29.4
CANSAT78G2326 Cannabis sativa HOM05D008235 ORTHO05D009358 4.8e-39 166.8 457 32.4
Duzib268G0443 Durio zibethinus HOM05D008235 ORTHO05D009358 9.0e-38 162.5 398 32.9
CiPaw.01G099800 Carya illinoinensis HOM05D008235 ORTHO05D009358 2.0e-37 161.4 366 35.2
Manes.04G042909 Manihot esculenta HOM05D008235 ORTHO05D009358 7.6e-37 159.5 600 28.8
Gohir.A10G137600 Gossypium hirsutum HOM05D008235 ORTHO05D009358 4.2e-35 153.7 500 29.6
Manes.11G121000 Manihot esculenta HOM05D008235 ORTHO05D009358 3.3e-32 144.1 599 27.0
COL.COLO4_07668 Corchorus olitorius HOM05D008235 ORTHO05D009358 3.1e-30 137.5 347 32.3
CAN.G112.20 Capsicum annuum HOM05D014650 ORTHO05D022197 2.0e-29 134.8 514 28.6
Solyc05g050740.3 Solanum lycopersicum HOM05D014650 ORTHO05D009358 1.9e-27 128.3 520 27.3
Gohir.D10G129000 Gossypium hirsutum HOM05D008235 ORTHO05D009358 2.5e-27 127.9 461 27.5
ClCG07G015680 Citrullus lanatus HOM05D008235 ORTHO05D009358 2.1e-26 124.8 392 30.9
Cpa.g.sc9.283 Carica papaya HOM05D008235 ORTHO05D009358 6.1e-26 123.2 582 27.3
Sopen05g029150 Solanum pennellii HOM05D014650 ORTHO05D022197 7.9e-26 122.9 605 28.1
Gohir.A03G088800 Gossypium hirsutum HOM05D008235 ORTHO05D009358 1.0e-25 122.5 432 30.6
CsaV3_4G003430 Cucumis sativus L. HOM05D008235 ORTHO05D009358 3.9e-25 120.6 399 30.3
MELO3C017713.2 Cucumis melo HOM05D008235 ORTHO05D009358 5.1e-25 120.2 398 29.6
Cc03_g12910 Coffea canephora HOM05D008235 ORTHO05D009358 1.1e-24 119.0 396 30.1
Phvul.011G054200 Phaseolus vulgaris HOM05D008235 ORTHO05D009358 1.1e-24 119.0 388 29.4
Nitab4.5_0011467g0040 Nicotiana tabacum HOM05D014650 ORTHO05D009358 2.5e-24 117.9 314 32.5
Lalb_Chr22g0352131 Lupinus albus HOM05D008235 ORTHO05D009358 3.3e-24 117.5 390 30.5
THA.LOC104800392 Tarenaya hassleriana HOM05D009929 ORTHO05D009358 9.7e-24 115.9 460 27.6
VMungo1127G1046 Vigna mungo HOM05D008235 ORTHO05D009358 3.7e-23 114.0 392 30.6
Sed0015774 Sechium edule HOM05D008235 ORTHO05D009358 6.3e-23 113.2 395 30.6
Oeu053824.1 Olea europaea HOM05D008235 ORTHO05D009358 1.1e-22 112.5 505 27.7
Peaxi162Scf01052g00325 Petunia axillaris HOM05D014650 ORTHO05D009358 1.8e-22 111.7 544 27.8
arahy.Tifrunner.gnm1.ann1.TK6P88 Arachis hypogaea HOM05D008235 ORTHO05D009358 2.4e-22 111.3 394 30.5
Lj3g0014084 Lotus japonicus HOM05D008235 ORTHO05D009358 1.2e-21 109.0 395 29.9
THA.LOC104803712 Tarenaya hassleriana HOM05D009929 ORTHO05D009358 5.9e-21 106.7 473 25.4
Nitab4.5_0002598g0040 Nicotiana tabacum HOM05D014650 ORTHO05D009358 2.2e-20 104.8 270 33.7
arahy.Tifrunner.gnm1.ann1.V6VI7P Arachis hypogaea HOM05D008235 ORTHO05D009358 3.8e-20 104.0 390 29.7
Glyma.12G052200 Glycine max HOM05D008235 ORTHO05D009358 3.8e-20 104.0 413 31.0
Aqoxy2G04121 Aquilegia oxysepala HOM05D008235 ORTHO05D009358 1.9e-19 101.7 579 26.3
Glyma.13G344300 Glycine max HOM05D008235 ORTHO05D009358 3.6e-18 97.4 262 29.4
Glyma.11G127600 Glycine max HOM05D008235 ORTHO05D009358 1.4e-17 95.5 379 28.0
Ca_20789_v3 Cicer arietinum L. HOM05D008235 ORTHO05D009358 1.1e-16 92.4 387 29.5
AUR62002309 Chenopodium quinoa HOM05D019141 ORTHO05D009358 2.0e-13 81.6 480 25.2
Sc13g0006760 Simmondsia chinensis HOM05D008235 ORTHO05D009358 2.6e-13 81.3 521 23.6
AL5G41340 Arabidopsis lyrata HOM05D009929 ORTHO05D009358 7.7e-13 79.7 528 24.4
Eucgr.A00083 Eucalyptus grandis HOM05D008235 ORTHO05D009358 1.7e-12 78.6 309 26.9
AT3G59430 Arabidopsis thaliana HOM05D009929 ORTHO05D009358 2.2e-12 78.2 531 23.9
Medtr4g067260 Medicago truncatula HOM05D008235 ORTHO05D009358 8.5e-12 76.3 422 27.3
Ah.13g072860 Amaranthus hybridus HOM05D019141 ORTHO05D009358 1.1e-11 75.9 401 25.7
Hund03161 Selenicereus undatus HOM05D019141 ORTHO05D009358 1.4e-11 75.5 255 31.8
EL10Ac3g05943 Beta vulgaris HOM05D019141 ORTHO05D009358 2.5e-11 74.7 492 24.6
Thhalv10005962m.g Eutrema salsugineum HOM05D009929 ORTHO05D009358 4.2e-11 73.9 456 25.9
Carub.0005s2617 Capsella rubella HOM05D009929 ORTHO05D009358 2.1e-10 71.6 536 24.6
A09p51710 Brassica napus HOM05D009929 ORTHO05D009358 1.0e-09 69.3 485 24.3
CARHR169830 Cardamine hirsuta HOM05D009929 ORTHO05D009358 3.0e-09 67.8 520 23.1
DCAR_023937 Daucus carota HOM05D008235 ORTHO05D009358 6.7e-09 66.6 125 33.6
PSO017G5357 Papaver somniferum HOM05D066249 ORTHO05D009358 6.7e-09 66.6 324 26.2
PSO675G1581 Papaver somniferum HOM05D066249 ORTHO05D009358 6.7e-09 66.6 361 27.1
Sp5g03710 Schrenkiella parvula HOM05D009929 ORTHO05D009358 8.8e-09 66.2 400 25.2
BcaC07g40472 Brassica carinata HOM05D009929 ORTHO05D009358 1.1e-08 65.9 386 24.6
AUR62015381 Chenopodium quinoa HOM05D019141 ORTHO05D009358 1.5e-08 65.5 504 23.8
Lsat_1_v5_gn_3_115581 Lactuca sativa HOM05D040109 ORTHO05D009358 2.0e-08 65.1 147 29.3
HanXRQChr03g0091101 Helianthus annuus HOM05D040109 ORTHO05D009358 2.6e-08 64.7 143 30.1
BcaC07g40284 Brassica carinata HOM05D009929 ORTHO05D009358 3.7e-07 60.8 491 23.0
C08p34440 Brassica napus HOM05D009929 ORTHO05D009358 3.7e-07 60.8 491 23.0
BolC8t51045H Brassica oleracea HOM05D009929 ORTHO05D009358 3.7e-07 60.8 491 23.0
BraA09t40607Z Brassica rapa HOM05D009929 ORTHO05D009358 4.8e-07 60.5 482 23.2
Aa31LG1G25120 Aethionema arabicum HOM05D009929 ORTHO05D006942 2.4e-06 58.2 513 22.4
Psat7g208600 Pisum sativum HOM05D008235 ORTHO05D009358 3.1e-06 57.8 82 37.8
PGSC0003DMG400007031 Solanum tuberosum HOM05D014650 ORTHO05D022197 9.1e-06 56.2 38 68.4


User provided reference genes

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