Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022246 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112219 9.4e-59 229.9 113 100.0
CSS0048600 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.0e-24 115.9 63 87.3
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 7.5e-24 114.0 61 90.2
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.2e-23 112.5 61 88.5
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 6.4e-23 110.9 61 88.5
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.4e-22 109.8 61 86.9
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 1.0e-20 103.6 61 82.0
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 6.6e-20 100.9 89 61.8
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.1e-19 100.1 89 61.8
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 2.5e-19 99.0 61 80.3
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 2.8e-18 95.5 63 77.8
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 4.7e-18 94.7 61 73.8
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 6.2e-18 94.4 62 79.0
CSS0015562 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.1e-17 93.6 57 80.7
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 1.1e-17 93.6 63 76.2
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 1.4e-17 93.2 63 74.6
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 3.1e-17 92.0 57 73.7
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 3.1e-17 92.0 57 73.7
PGSC0003DMG401007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 3.1e-17 92.0 57 73.7
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 4.0e-17 91.7 61 73.8
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 5.2e-17 91.3 61 75.4
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 5.2e-17 91.3 62 75.8
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 6.8e-17 90.9 63 74.6
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 1.2e-16 90.1 65 73.8
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 1.2e-16 90.1 75 62.7
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 1.5e-16 89.7 63 74.6
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 1.5e-16 89.7 61 70.5
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 2.0e-16 89.4 63 73.0
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 2.0e-16 89.4 61 73.8
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 2.6e-16 89.0 57 70.2
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 3.4e-16 88.6 63 76.2
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 5.8e-16 87.8 63 73.0
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 9.8e-16 87.0 61 72.1
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 1.3e-15 86.7 61 73.8
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 2.9e-15 85.5 57 77.2
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 2.9e-15 85.5 61 70.5
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 3.7e-15 85.1 60 73.3
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 3.7e-15 85.1 60 73.3
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 3.7e-15 85.1 62 71.0
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 4.9e-15 84.7 57 66.7
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 4.9e-15 84.7 58 72.4
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 6.4e-15 84.3 57 68.4
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 6.4e-15 84.3 57 68.4
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 8.3e-15 84.0 61 70.5
Eucgr.E01216 Eucalyptus grandis HOM05D004914 ORTHO05D006512 8.3e-15 84.0 61 70.5
Lalb_Chr05g0215361 Lupinus albus HOM05D004914 ORTHO05D006512 8.3e-15 84.0 61 72.1
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 8.3e-15 84.0 61 72.1
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 8.3e-15 84.0 62 71.0
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 8.3e-15 84.0 63 71.4
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 1.1e-14 83.6 61 65.6
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 1.9e-14 82.8 54 72.2
PSO717G0130 Papaver somniferum HOM05D004914 ORTHO05D006512 1.9e-14 82.8 61 68.9
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 1.9e-14 82.8 62 67.7
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 1.9e-14 82.8 62 69.4
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 2.4e-14 82.4 57 70.2
FAN04G0884 Fragaria x ananassa HOM05D004914 ORTHO05D006512 2.4e-14 82.4 63 66.7
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 2.4e-14 82.4 62 69.4
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 3.2e-14 82.0 62 69.4
FAN18G1875 Fragaria x ananassa HOM05D004914 ORTHO05D006512 3.2e-14 82.0 62 69.4
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 7.0e-14 80.9 58 69.0
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 7.0e-14 80.9 62 67.7
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 9.2e-14 80.5 62 69.4
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 1.2e-13 80.1 60 70.0
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 1.6e-13 79.7 57 61.4
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 1.6e-13 79.7 62 64.5
Ca_25087_v3 Cicer arietinum L. HOM05D004914 ORTHO05D006512 2.0e-13 79.3 63 66.7
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 2.0e-13 79.3 62 62.9
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 2.0e-13 79.3 57 70.2
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 2.7e-13 79.0 57 63.2
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 2.7e-13 79.0 57 63.2
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 2.7e-13 79.0 57 63.2
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 2.7e-13 79.0 58 65.5
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 2.7e-13 79.0 57 70.2
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 3.5e-13 78.6 57 61.4
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 3.5e-13 78.6 57 59.6
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 3.5e-13 78.6 58 69.0
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 3.5e-13 78.6 61 67.2
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 4.6e-13 78.2 57 61.4
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 6.0e-13 77.8 57 63.2
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 6.0e-13 77.8 61 67.2
Gohir.A03G179800 Gossypium hirsutum HOM05D004914 ORTHO05D006512 7.8e-13 77.4 55 70.9
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 7.8e-13 77.4 55 70.9
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 7.8e-13 77.4 55 70.9
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 1.3e-12 76.6 60 63.3
SEGI_09515 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.7e-12 76.3 65 60.0
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 2.3e-12 75.9 56 67.9
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 2.3e-12 75.9 57 61.4
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 2.3e-12 75.9 62 59.7
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 2.3e-12 75.9 63 66.7
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 3.9e-12 75.1 61 65.6
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 3.9e-12 75.1 63 65.1
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 5.0e-12 74.7 55 69.1
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 6.6e-12 74.3 61 62.3
COL.COLO4_37234 Corchorus olitorius HOM05D004914 ORTHO05D006512 6.6e-12 74.3 62 59.7
Migut.A00542 Erythranthe guttata HOM05D004914 ORTHO05D006512 1.1e-11 73.6 61 62.3
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 1.5e-11 73.2 55 63.6
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 1.5e-11 73.2 59 66.1
QL12p001923 Quercus lobata HOM05D004914 ORTHO05D006512 1.5e-11 73.2 59 66.1
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 2.5e-11 72.4 55 61.8
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 4.3e-11 71.6 54 61.1
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 4.3e-11 71.6 54 61.1
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 4.3e-11 71.6 54 61.1
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 4.3e-11 71.6 54 61.1
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 4.3e-11 71.6 54 61.1
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 4.3e-11 71.6 57 64.9
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 5.6e-11 71.2 64 64.1
SEGI_16876 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 5.6e-11 71.2 55 63.6
CDE12G0485 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 7.3e-11 70.9 55 61.8
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 9.5e-11 70.5 55 63.6
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.6e-10 69.7 55 61.8
SEGI_28013 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 2.1e-10 69.3 55 61.8
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 8.1e-10 67.4 60 58.3
SMO134G0146 Selaginella moellendorffii HOM05D004914 ORTHO05D006512 4.0e-09 65.1 54 55.6
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 8.9e-09 63.9 61 55.7
Mapoly0244s0005 Marchantia polymorpha HOM05D004914 ORTHO05D006512 8.9e-09 63.9 61 55.7
Mapoly0339s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 8.9e-09 63.9 61 55.7
Os10g0580400 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D006512 1.2e-08 63.5 63 54.0
Zm00001eb279810 Zea mays HOM05D004914 ORTHO05D006512 1.5e-08 63.2 56 57.1
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 3.2e-06 55.5 61 47.5
Pp3c14_7160 Physcomitrium patens HOM05D004914 ORTHO05D006512 9.2e-06 53.9 37 67.6


User provided reference genes

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