Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.4e-88 327.8 183 100.0
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.5e-87 324.7 183 98.9
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.9e-87 324.3 183 98.9
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.3e-86 323.2 183 98.9
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.7e-86 322.8 183 98.4
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.3e-86 322.4 181 98.9
CSS0019011 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.1e-76 289.3 183 91.3
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.2e-75 284.6 197 85.8
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.2e-75 284.6 201 84.1
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.2e-75 284.6 197 85.8
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.4e-72 274.6 201 81.6
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 1.1e-43 180.6 207 60.9
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.8e-43 179.9 194 59.8
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.1e-43 179.1 194 60.8
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 2.3e-38 162.9 202 55.9
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 6.6e-38 161.4 202 54.5
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 3.6e-36 155.6 205 53.7
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.2e-34 150.6 212 50.5
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.2e-34 150.6 212 50.5
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 3.8e-33 145.6 205 52.2
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 3.2e-32 142.5 198 50.0
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 1.2e-31 140.6 198 54.5
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 5.1e-30 135.2 201 48.8
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 4.8e-28 128.6 202 48.0
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 1.8e-27 126.7 202 47.0
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 5.3e-27 125.2 202 47.0
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 5.3e-27 125.2 202 47.0
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 6.9e-27 124.8 208 48.6
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 1.2e-26 124.0 205 45.9
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 4.5e-26 122.1 205 44.9
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 3.8e-25 119.0 208 43.3
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 6.4e-25 118.2 198 46.0
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 3.2e-24 115.9 204 42.6
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 7.1e-24 114.8 204 43.1
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 1.6e-23 113.6 202 43.6
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 2.1e-23 113.2 204 41.7
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 2.7e-23 112.8 191 46.1
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 3.5e-23 112.5 203 43.3
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 7.9e-23 111.3 209 42.1
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 1.8e-22 110.2 195 45.1
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 3.9e-22 109.0 198 42.9
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 6.7e-22 108.2 199 43.7
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 8.7e-22 107.8 198 42.4
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 1.9e-21 106.7 210 44.8
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 4.3e-21 105.5 198 42.4
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 1.3e-20 104.0 196 42.3
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 2.1e-20 103.2 199 40.7
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 4.8e-20 102.1 208 42.3
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 4.8e-20 102.1 199 42.7
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 6.2e-20 101.7 197 42.6
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 6.2e-20 101.7 208 42.3
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 8.2e-20 101.3 197 40.6
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 1.1e-19 100.9 206 42.2
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 1.4e-19 100.5 195 43.1
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 1.8e-19 100.1 210 40.5
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 2.4e-19 99.8 128 50.0
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 1.2e-18 97.4 194 40.2
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 3.4e-18 95.9 188 40.4
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 5.8e-18 95.1 196 42.3
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 5.8e-18 95.1 208 44.2
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 1.3e-17 94.0 197 42.6
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 2.2e-17 93.2 211 40.8
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 2.2e-17 93.2 201 39.8
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 2.9e-17 92.8 196 41.3
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 3.8e-17 92.4 204 40.2
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 4.9e-17 92.0 210 42.4
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 6.5e-17 91.7 203 41.4
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 1.4e-16 90.5 200 39.0
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 1.9e-16 90.1 199 38.2
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 1.9e-16 90.1 199 38.2
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 1.9e-16 90.1 196 38.8
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 2.5e-16 89.7 196 40.8
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 5.5e-16 88.6 204 39.7
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 7.1e-16 88.2 209 40.7
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 1.2e-15 87.4 198 37.9
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 2.7e-15 86.3 193 39.9
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 3.5e-15 85.9 212 40.6
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 4.6e-15 85.5 195 40.0
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 4.6e-15 85.5 196 37.8
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 4.6e-15 85.5 194 40.7
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 6.0e-15 85.1 166 40.4
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 1.3e-14 84.0 213 39.4
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.3e-14 84.0 202 37.6
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 1.3e-14 84.0 202 38.1
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 1.8e-14 83.6 214 36.0
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 1.8e-14 83.6 210 36.7
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 2.3e-14 83.2 215 35.8
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 6.7e-14 81.6 200 39.5
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.5e-13 80.5 206 36.4
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 1.9e-13 80.1 196 38.8
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 5.7e-13 78.6 132 44.7
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 1.3e-12 77.4 174 39.7
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 1.6e-12 77.0 192 38.5
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 2.2e-12 76.6 202 35.6
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 2.8e-12 76.3 154 39.0
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 2.8e-12 76.3 199 35.7
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 2.8e-12 76.3 194 35.1
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 3.7e-12 75.9 217 35.0
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 8.2e-12 74.7 198 35.9
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 2.4e-11 73.2 207 36.7
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 2.4e-11 73.2 202 36.6
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 6.9e-11 71.6 204 36.3
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 9.0e-11 71.2 201 35.8
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 4.5e-10 68.9 155 36.8
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 7.7e-10 68.2 197 35.0
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 7.7e-10 68.2 192 36.5
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 7.7e-10 68.2 192 36.5
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 1.3e-09 67.4 192 35.9
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 1.3e-09 67.4 198 39.4
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 1.3e-09 67.4 196 37.8
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 1.3e-09 67.4 194 38.7
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 1.3e-09 67.4 140 38.6
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 2.2e-09 66.6 196 37.8
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 2.2e-09 66.6 196 37.8
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 2.9e-09 66.2 200 36.5
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 2.9e-09 66.2 203 36.9
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 5.0e-09 65.5 196 38.8
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 6.5e-09 65.1 199 35.2
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 6.5e-09 65.1 118 42.4
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.4e-08 63.9 203 34.5
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 1.4e-08 63.9 133 39.1
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 1.9e-08 63.5 213 34.3
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 2.5e-08 63.2 197 38.6
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 2.5e-08 63.2 203 37.9
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 4.2e-08 62.4 115 40.0
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 4.2e-08 62.4 205 32.7
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 1.2e-07 60.8 197 37.6
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 1.2e-07 60.8 197 34.0
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 1.6e-07 60.5 197 34.0
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 2.7e-07 59.7 200 35.0
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.4e-06 57.4 197 31.0
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 2.3e-06 56.6 135 34.8
QL07p047840 Quercus lobata HOM05D004683 ORTHO05D005388 6.7e-06 55.1 63 46.0


User provided reference genes

Program Settings