Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022240 Camellia sinensis var. sinensis HOM05D006332 ORTHO05D008421 2.6e-242 841.6 425 100.0
Actinidia01892 Actinidia chinensis HOM05D006332 ORTHO05D008421 2.3e-211 738.8 440 85.7
Dinv07538 Davidia involucrata HOM05D006332 ORTHO05D008421 4.6e-199 698.0 441 81.2
GSVIVG01002030001 Vitis vinifera HOM05D006332 ORTHO05D008421 3.8e-193 678.3 437 77.3
Cc02_g13080 Coffea canephora HOM05D006332 ORTHO05D008421 9.2e-192 673.7 438 77.6
Lj1C1207T6 Lonicera japonica HOM05D006332 ORTHO05D008421 1.7e-190 669.5 433 77.4
TAR629G2846 Trochodendron aralioides HOM05D006332 ORTHO05D008421 8.7e-190 667.2 439 76.8
CiPaw.09G057500 Carya illinoinensis HOM05D006332 ORTHO05D008421 7.3e-189 664.1 440 77.5
Hma1.2p1_0881F.1_g231970 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 1.3e-185 653.3 437 77.3
Oeu053924.1 Olea europaea HOM05D006332 ORTHO05D008421 3.2e-184 648.7 435 76.1
MSTRG.13186 Avicennia marina HOM05D006332 ORTHO05D008421 1.2e-183 646.7 436 75.9
PGSC0003DMG400022831 Solanum tuberosum HOM05D006332 ORTHO05D008421 2.1e-183 646.0 448 73.7
Thecc.06G190700 Theobroma cacao HOM05D006332 ORTHO05D008421 2.7e-183 645.6 441 75.3
Solyc10g008990.4 Solanum lycopersicum HOM05D006332 ORTHO05D008421 1.0e-182 643.7 445 73.7
Gohir.D06G130900 Gossypium hirsutum HOM05D006332 ORTHO05D008421 2.5e-181 639.0 441 74.1
Prupe.4G044000 Prunus persica HOM05D006332 ORTHO05D008421 7.3e-181 637.5 441 74.1
Haze_06500 Corylus avellana HOM05D006332 ORTHO05D008421 1.6e-180 636.3 445 73.3
MD10G1296600 Malus domestica HOM05D006332 ORTHO05D008421 1.4e-179 633.3 447 73.4
HanXRQChr04g0124141 Helianthus annuus HOM05D006332 ORTHO05D008421 2.4e-179 632.5 439 74.0
Manes.16G025600 Manihot esculenta HOM05D006332 ORTHO05D008421 2.4e-179 632.5 441 74.4
Glyma.13G181100 Glycine max HOM05D006332 ORTHO05D008421 5.3e-179 631.3 433 75.1
Gohir.A06G126100 Gossypium hirsutum HOM05D006332 ORTHO05D008421 1.2e-178 630.2 443 73.4
Duzib235G1125 Durio zibethinus HOM05D006332 ORTHO05D008421 2.6e-178 629.0 438 74.0
Potri.004G040500 Populus trichocarpa HOM05D006332 ORTHO05D008421 2.6e-178 629.0 436 73.2
QL05p039635 Quercus lobata HOM05D006332 ORTHO05D008421 2.6e-178 629.0 445 72.8
MELO3C002589.2 Cucumis melo HOM05D006332 ORTHO05D008421 1.3e-177 626.7 441 71.4
Cpa.g.sc27.66 Carica papaya HOM05D006332 ORTHO05D008421 1.7e-177 626.3 434 74.2
COL.COLO4_31500 Corchorus olitorius HOM05D006332 ORTHO05D008421 1.7e-177 626.3 464 71.6
TWI38G1702 Tripterygium wilfordii HOM05D006332 ORTHO05D008421 4.9e-177 624.8 443 72.9
CANSAT35G2021 Cannabis sativa HOM05D006332 ORTHO05D008421 8.4e-177 624.0 438 73.1
ClCG03G005920 Citrullus lanatus HOM05D006332 ORTHO05D008421 1.4e-176 623.2 435 72.0
Duzib160G0593 Durio zibethinus HOM05D006332 ORTHO05D008421 1.4e-176 623.2 435 74.0
Migut.H01511 Erythranthe guttata HOM05D006332 ORTHO05D008421 1.9e-176 622.9 438 72.8
PGR004G2698 Punica granatum HOM05D006332 ORTHO05D008421 1.9e-176 622.9 441 71.4
Lj4g0020818 Lotus japonicus HOM05D006332 ORTHO05D008421 4.2e-176 621.7 430 74.7
Phvul.002G227700 Phaseolus vulgaris HOM05D006332 ORTHO05D008421 5.4e-176 621.3 433 74.6
CsaV3_1G012160 Cucumis sativus L. HOM05D006332 ORTHO05D008421 7.1e-176 620.9 441 70.7
Ca_18532_v3 Cicer arietinum L. HOM05D006332 ORTHO05D008421 1.2e-175 620.2 433 74.4
RcHm_v2.0_Chr5g0008031 Rosa chinensis HOM05D006332 ORTHO05D008421 1.2e-175 620.2 441 71.9
PSO063G3883 Papaver somniferum HOM05D006332 ORTHO05D008421 1.6e-175 619.8 443 72.5
FvH4_3g04870 Fragaria vesca HOM05D006332 ORTHO05D008421 2.1e-175 619.4 436 72.7
FAN16G1437 Fragaria x ananassa HOM05D006332 ORTHO05D008421 3.5e-175 618.6 433 73.4
Gorai.010G152800 Gossypium raimondii HOM05D006332 ORTHO05D008421 7.9e-175 617.5 428 74.3
Sed0003237 Sechium edule HOM05D006332 ORTHO05D008421 1.8e-174 616.3 440 70.0
MD05G1316100 Malus domestica HOM05D006332 ORTHO05D008421 3.0e-174 615.5 447 71.1
FAN21G2488 Fragaria x ananassa HOM05D003523 ORTHO05D004493 1.1e-173 613.6 427 73.1
FAN11G2101 Fragaria x ananassa HOM05D003523 ORTHO05D004493 1.5e-173 613.2 436 72.0
Peaxi162Scf00530g00823 Petunia axillaris HOM05D006332 ORTHO05D008421 1.5e-173 613.2 444 71.6
Nitab4.5_0003942g0020 Nicotiana tabacum HOM05D006332 ORTHO05D008421 2.5e-173 612.5 447 71.4
Eucgr.D00641 Eucalyptus grandis HOM05D006332 ORTHO05D008421 3.3e-173 612.1 438 71.7
TPR.G12057 Trifolium pratense HOM05D006332 ORTHO05D008421 7.4e-173 610.9 436 73.2
PSO782G1256 Papaver somniferum HOM05D006332 ORTHO05D008421 3.7e-172 608.6 443 71.3
THA.LOC104817534 Tarenaya hassleriana HOM05D006332 ORTHO05D008421 3.7e-172 608.6 443 70.9
Psat7g112800 Pisum sativum HOM05D006332 ORTHO05D008421 1.8e-171 606.3 433 73.0
Glyma.07G195200 Glycine max HOM05D006332 ORTHO05D008421 1.2e-170 603.6 436 72.7
Gohir.A10G024200 Gossypium hirsutum HOM05D006332 ORTHO05D008421 1.5e-170 603.2 441 69.6
Ciclev10015324m.g Citrus clementina HOM05D006332 ORTHO05D008421 4.5e-170 601.7 434 71.7
Medtr4g088960 Medicago truncatula HOM05D006332 ORTHO05D008421 7.6e-170 600.9 433 71.8
VMungo0251G1219 Vigna mungo HOM05D006332 ORTHO05D008421 7.6e-170 600.9 427 72.6
arahy.Tifrunner.gnm1.ann1.5TP18E Arachis hypogaea HOM05D006332 ORTHO05D008421 2.4e-168 595.9 427 71.0
arahy.Tifrunner.gnm1.ann1.I941VF Arachis hypogaea HOM05D006332 ORTHO05D008421 2.4e-168 595.9 426 71.4
Gorai.011G026200 Gossypium raimondii HOM05D006332 ORTHO05D008421 2.4e-168 595.9 435 69.7
Aqoxy1G02544 Aquilegia oxysepala HOM05D006332 ORTHO05D008421 3.2e-168 595.5 433 68.6
Lalb_Chr16g0383661 Lupinus albus HOM05D006332 ORTHO05D008421 3.2e-168 595.5 433 71.8
ECA236G3091 Erigeron canadensis HOM05D006332 ORTHO05D008421 4.2e-168 595.1 445 69.4
Gohir.D10G024900 Gossypium hirsutum HOM05D006332 ORTHO05D008421 4.2e-168 595.1 434 69.8
TWI63G1670 Tripterygium wilfordii HOM05D006332 ORTHO05D008421 1.3e-166 590.1 460 67.8
ATR0680G340 Amborella trichopoda HOM05D006332 ORTHO05D008421 1.8e-166 589.7 434 71.4
Thhalv10018568m.g Eutrema salsugineum HOM05D006332 ORTHO05D008421 5.6e-165 584.7 441 68.7
AT2G47960 Arabidopsis thaliana HOM05D006332 ORTHO05D008421 9.6e-165 583.9 445 69.0
EL10Ac8g20347 Beta vulgaris HOM05D006332 ORTHO05D008421 2.1e-164 582.8 436 69.5
AL4G47550 Arabidopsis lyrata HOM05D006332 ORTHO05D008421 2.8e-164 582.4 439 69.0
Carub.0004s3069 Capsella rubella HOM05D006332 ORTHO05D008421 2.8e-164 582.4 442 69.0
Sp4g29880 Schrenkiella parvula HOM05D006332 ORTHO05D008421 1.8e-163 579.7 442 67.9
Nn6g34413 Nelumbo nucifera HOM05D006332 ORTHO05D008421 5.3e-163 578.2 444 65.8
HanXRQChr01g0003951 Helianthus annuus HOM05D006332 ORTHO05D008421 3.4e-162 575.5 430 69.1
AUR62016979 Chenopodium quinoa HOM05D006332 ORTHO05D008421 2.2e-161 572.8 431 70.3
BcaC02g12534 Brassica carinata HOM05D006332 ORTHO05D008421 3.8e-161 572.0 440 68.2
Hma1.2p1_0126F.1_g059220 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 1.4e-160 570.1 449 66.4
AUR62014792 Chenopodium quinoa HOM05D006332 ORTHO05D008421 1.3e-158 563.5 446 68.4
ECA248G3961 Erigeron canadensis HOM05D006332 ORTHO05D008421 3.0e-158 562.4 433 66.5
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 3.9e-158 562.0 433 67.9
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 3.9e-158 562.0 433 67.9
CDE08G0172 Ceratophyllum demersum HOM05D006332 ORTHO05D008421 3.9e-158 562.0 444 66.4
BcaB02g08727 Brassica carinata HOM05D006332 ORTHO05D008421 5.1e-158 561.6 445 67.4
Sabra04G0025000 Salix brachista HOM05D006332 ORTHO05D008421 5.1e-158 561.6 498 62.4
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 1.5e-157 560.1 433 67.7
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 1.5e-157 560.1 433 67.7
MBI17_g03748_MAGBIO Magnolia biondii HOM05D006332 ORTHO05D008421 4.5e-154 548.5 425 67.5
Nn1g04020 Nelumbo nucifera HOM05D006332 ORTHO05D008421 1.9e-152 543.1 368 74.5
HPP92_001753 Vanilla planifolia HOM05D006332 ORTHO05D008421 3.2e-152 542.3 441 63.9
Zm00001eb044550 Zea mays HOM05D006332 ORTHO05D008421 1.8e-150 536.6 441 63.7
Lsat_1_v5_gn_7_19001 Lactuca sativa HOM05D006332 ORTHO05D008421 3.3e-149 532.3 433 65.4
SGA_v2.0_scaffold49G18281 Striga asiatica HOM05D006332 ORTHO05D008421 3.3e-149 532.3 452 62.6
Aa31LG1G29380 Aethionema arabicum HOM05D006332 ORTHO05D008421 1.4e-147 526.9 443 63.9
Hma1.2p1_0881F.1_g231960 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 3.4e-146 522.3 346 78.6
CARHR143350 Cardamine hirsuta HOM05D006332 ORTHO05D008421 1.4e-144 516.9 385 70.1
Cfa000416 Carpinus fangiana HOM05D006332 ORTHO05D008421 2.1e-143 513.1 332 77.4
DCAR_004087 Daucus carota HOM05D006332 ORTHO05D008421 5.0e-137 491.9 342 73.4
Lsat_1_v5_gn_1_127821 Lactuca sativa HOM05D006332 ORTHO05D008421 9.4e-136 487.6 438 60.5
Nitab4.5_0009738g0010 Nicotiana tabacum HOM05D006332 ORTHO05D008421 3.6e-135 485.7 354 71.5
Hund21245 Selenicereus undatus HOM05D006332 ORTHO05D008421 1.8e-134 483.4 434 59.9
unitig_8.g3355 Utricularia gibba HOM05D006332 ORTHO05D008421 8.2e-132 474.6 444 58.6
CAN.G413.15 Capsicum annuum HOM05D006332 ORTHO05D008421 9.1e-131 471.1 328 72.3
Duzib192G0908 Durio zibethinus HOM05D006332 ORTHO05D008421 1.2e-130 470.7 337 72.7
Mapoly0122s0006 Marchantia polymorpha HOM05D006332 ORTHO05D008421 1.7e-116 423.7 442 49.8
Pp3c1_28670 Physcomitrium patens HOM05D006332 ORTHO05D008421 2.8e-116 422.9 434 49.5
Sc24g0000810 Simmondsia chinensis HOM05D006332 ORTHO05D008421 1.4e-115 420.6 299 71.2
Atru.chr10.1934 Acer truncatum HOM05D006332 ORTHO05D008421 1.1e-112 411.0 290 72.4
AagrBONN_evm.TU.Sc2ySwM_344.1820 Anthoceros agrestis HOM05D006332 ORTHO05D008421 9.5e-112 407.9 430 49.3
SMO364G0571 Selaginella moellendorffii HOM05D006332 ORTHO05D008421 6.8e-110 401.7 427 49.6
Nitab4.5_0009738g0020 Nicotiana tabacum HOM05D006332 ORTHO05D008421 2.4e-83 313.5 240 65.4
CBR_g24248 Chara braunii HOM05D006332 ORTHO05D008421 4.1e-83 312.8 450 40.2
SMO364G0067 Selaginella moellendorffii HOM05D006332 ORTHO05D008421 1.7e-81 307.4 314 51.0
SHI01800 Sapria himalayana HOM05D006332 ORTHO05D008421 1.9e-80 303.9 261 62.1
Sopen10g004770 Solanum pennellii HOM05D006332 ORTHO05D008421 1.9e-80 303.9 215 69.3
Gohir.A10G024325 Gossypium hirsutum HOM05D006332 ORTHO05D008421 4.4e-77 292.7 208 72.1
Gohir.A10G024350 Gossypium hirsutum HOM05D006332 ORTHO05D008421 2.1e-50 204.1 154 66.2
SHI01798 Sapria himalayana HOM05D000002 ORTHO05D000001 1.3e-41 174.9 204 50.0
PRCOL_00003805 Prasinoderma coloniale HOM05D006332 ORTHO05D008421 5.5e-35 152.9 383 29.5
Atru.chr10.1933 Acer truncatum HOM05D006332 ORTHO05D008421 9.4e-35 152.1 119 65.5
Ciclev10009862m.g Citrus clementina HOM05D006332 ORTHO05D008421 6.3e-31 139.4 102 67.6
PSO017G7020 Papaver somniferum HOM05D006332 ORTHO05D000676 7.0e-22 109.4 113 48.7
PSO170G5489 Papaver somniferum HOM05D006332 ORTHO05D008421 1.2e-21 108.6 99 52.5
Nitab4.5_0009738g0030 Nicotiana tabacum HOM05D006332 ORTHO05D008421 1.1e-19 102.1 84 61.9
TPR.G24681 Trifolium pratense HOM05D006332 ORTHO05D001923 2.1e-18 97.8 62 74.2
Os10g0498800 Oryza sativa ssp. japonica HOM05D006332 ORTHO05D008421 7.7e-13 79.3 64 56.2
CDE02G4141 Ceratophyllum demersum HOM05D006332 ORTHO05D008421 2.7e-10 70.9 143 34.3
TPR.G32042 Trifolium pratense HOM05D006332 ORTHO05D034078 2.2e-07 61.2 40 72.5
Cpa.g.sc777.3 Carica papaya HOM05D006332 ORTHO05D034078 4.8e-07 60.1 38 73.7
FAN09G2993 Fragaria x ananassa HOM05D006332 ORTHO05D210550 2.4e-06 57.8 68 48.5


User provided reference genes

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