Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022236 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 3.1e-30 134.4 65 100.0
CSS0015421 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 7.6e-29 129.8 65 96.9
CSS0014503 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.1e-24 115.9 63 88.9
CSS0021979 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.1e-24 115.9 63 88.9
GSVIVG01029768001 Vitis vinifera HOM05D007316 ORTHO05D009393 1.8e-22 108.6 61 83.6
Hma1.2p1_0157F.1_g069460 Hydrangea macrophylla HOM05D007316 ORTHO05D009393 5.3e-22 107.1 62 82.3
QL09p015786 Quercus lobata HOM05D007316 ORTHO05D009393 9.0e-22 106.3 62 79.0
QL09p023249 Quercus lobata HOM05D007316 ORTHO05D009393 9.0e-22 106.3 62 79.0
Duzib128G0483 Durio zibethinus HOM05D007316 ORTHO05D009393 2.0e-21 105.1 62 77.4
Manes.17G057300 Manihot esculenta HOM05D007316 ORTHO05D009393 3.4e-21 104.4 61 80.3
QL02p030600 Quercus lobata HOM05D007316 ORTHO05D009393 4.5e-21 104.0 62 77.4
Thecc.05G261200 Theobroma cacao HOM05D007316 ORTHO05D009393 7.6e-21 103.2 62 77.4
RcHm_v2.0_Chr4g0387941 Rosa chinensis HOM05D007316 ORTHO05D009393 1.0e-20 102.8 62 72.6
Duzib106G1284 Durio zibethinus HOM05D007316 ORTHO05D009393 1.3e-20 102.4 62 75.8
THA.LOC104813939 Tarenaya hassleriana HOM05D007316 ORTHO05D009393 1.3e-20 102.4 62 77.4
RcHm_v2.0_Chr4g0387841 Rosa chinensis HOM05D007316 ORTHO05D009393 1.7e-20 102.1 62 72.6
Ciclev10023234m.g Citrus clementina HOM05D007316 ORTHO05D009393 2.2e-20 101.7 62 77.4
Gohir.D13G105800 Gossypium hirsutum HOM05D007316 ORTHO05D009393 2.2e-20 101.7 62 75.8
RcHm_v2.0_Chr4g0385941 Rosa chinensis HOM05D007316 ORTHO05D009393 2.2e-20 101.7 62 72.6
Cc02_g36870 Coffea canephora HOM05D007316 ORTHO05D009393 2.9e-20 101.3 56 82.1
Eucgr.H00565 Eucalyptus grandis HOM05D007316 ORTHO05D009393 2.9e-20 101.3 62 74.2
Phvul.001G220400 Phaseolus vulgaris HOM05D007316 ORTHO05D009393 2.9e-20 101.3 61 77.0
FvH4_4g00490 Fragaria vesca HOM05D007316 ORTHO05D009393 4.9e-20 100.5 62 71.0
FAN12G3999 Fragaria x ananassa HOM05D007316 ORTHO05D009393 4.9e-20 100.5 62 71.0
FAN17G1024 Fragaria x ananassa HOM05D007316 ORTHO05D009393 4.9e-20 100.5 62 71.0
FAN22G1131 Fragaria x ananassa HOM05D007316 ORTHO05D009393 4.9e-20 100.5 62 71.0
TWI23G0494 Tripterygium wilfordii HOM05D007316 ORTHO05D009393 4.9e-20 100.5 62 75.8
Ca_09261_v3 Cicer arietinum L. HOM05D007316 ORTHO05D009393 6.5e-20 100.1 61 75.4
Psat3g015560 Pisum sativum HOM05D007316 ORTHO05D009393 1.4e-19 99.0 61 75.4
Potri.004G058400 Populus trichocarpa HOM05D007316 ORTHO05D009393 1.9e-19 98.6 61 75.4
SalBow3G1440 Salvia bowleyana HOM05D007316 ORTHO05D009393 1.9e-19 98.6 61 75.4
CANSAT56G2903 Cannabis sativa HOM05D007316 ORTHO05D009393 2.5e-19 98.2 61 75.4
Glyma.19G223500 Glycine max HOM05D007316 ORTHO05D009393 2.5e-19 98.2 61 75.4
Medtr7g111090 Medicago truncatula HOM05D007316 ORTHO05D009393 2.5e-19 98.2 61 75.4
A07p29930 Brassica napus HOM05D007316 ORTHO05D009393 3.2e-19 97.8 62 72.6
C06p34200 Brassica napus HOM05D007316 ORTHO05D009393 3.2e-19 97.8 62 72.6
BolC6t38541H Brassica oleracea HOM05D007316 ORTHO05D009393 3.2e-19 97.8 62 72.6
BraA07t30632Z Brassica rapa HOM05D007316 ORTHO05D009393 3.2e-19 97.8 62 72.6
MELO3C021892.2 Cucumis melo HOM05D007316 ORTHO05D009393 3.2e-19 97.8 61 75.4
CsaV3_2G036390 Cucumis sativus L. HOM05D007316 ORTHO05D009393 4.2e-19 97.4 61 75.4
Glyma.03G226500 Glycine max HOM05D007316 ORTHO05D009393 4.2e-19 97.4 61 75.4
Sed0015703 Sechium edule HOM05D007316 ORTHO05D009393 4.2e-19 97.4 61 75.4
AL2G32940 Arabidopsis lyrata HOM05D007316 ORTHO05D009393 7.1e-19 96.7 62 71.0
ClCG09G016900 Citrullus lanatus HOM05D007316 ORTHO05D009393 7.1e-19 96.7 61 75.4
Aa31LG4G3460 Aethionema arabicum HOM05D007316 ORTHO05D009393 9.3e-19 96.3 62 72.6
Cfa016046 Carpinus fangiana HOM05D007316 ORTHO05D009393 9.3e-19 96.3 62 72.6
Migut.B00683 Erythranthe guttata HOM05D007316 ORTHO05D009393 9.3e-19 96.3 60 73.3
Migut.B00911 Erythranthe guttata HOM05D007316 ORTHO05D009393 9.3e-19 96.3 60 73.3
Potri.011G067800 Populus trichocarpa HOM05D007316 ORTHO05D009393 9.3e-19 96.3 61 72.1
Peaxi162Scf00071g00128 Petunia axillaris HOM05D007316 ORTHO05D009393 1.2e-18 95.9 58 77.6
Sopen08g002530 Solanum pennellii HOM05D007316 ORTHO05D009393 1.2e-18 95.9 66 71.2
PGSC0003DMG400026307 Solanum tuberosum HOM05D007316 ORTHO05D009393 1.2e-18 95.9 66 71.2
Cpa.g.sc233.10 Carica papaya HOM05D007316 ORTHO05D009393 1.6e-18 95.5 62 75.8
Prupe.3G122600 Prunus persica HOM05D007316 ORTHO05D009393 2.7e-18 94.7 62 71.0
Sp5g28140 Schrenkiella parvula HOM05D007316 ORTHO05D009393 2.7e-18 94.7 62 69.4
Atru.chr12.1494 Acer truncatum HOM05D007316 ORTHO05D009393 4.6e-18 94.0 61 73.8
arahy.Tifrunner.gnm1.ann1.AE1MMP Arachis hypogaea HOM05D007316 ORTHO05D009393 4.6e-18 94.0 61 70.5
arahy.Tifrunner.gnm1.ann1.CUXT1U Arachis hypogaea HOM05D007316 ORTHO05D009393 4.6e-18 94.0 61 70.5
Lj1g0006735 Lotus japonicus HOM05D007316 ORTHO05D009393 7.9e-18 93.2 61 67.2
Lalb_Chr04g0260251 Lupinus albus HOM05D007316 ORTHO05D009393 7.9e-18 93.2 59 71.2
COL.COLO4_20544 Corchorus olitorius HOM05D007316 ORTHO05D009393 1.8e-17 92.0 63 69.8
HanXRQChr07g0193721 Helianthus annuus HOM05D007316 ORTHO05D009393 1.8e-17 92.0 63 69.8
AT1G73177 Arabidopsis thaliana HOM05D007316 ORTHO05D009393 2.3e-17 91.7 62 67.7
CARHR066170 Cardamine hirsuta HOM05D007316 ORTHO05D009393 2.3e-17 91.7 62 67.7
PGR119G2118 Punica granatum HOM05D007316 ORTHO05D009393 6.7e-17 90.1 60 70.0
Carub.0002s1996 Capsella rubella HOM05D007316 ORTHO05D009393 8.7e-17 89.7 62 66.1
MD09G1239400 Malus domestica HOM05D007316 ORTHO05D009393 1.1e-16 89.4 60 68.3
BcaC08g45665 Brassica carinata HOM05D007316 ORTHO05D009393 1.5e-16 89.0 77 59.7
Aqoxy7G02856 Aquilegia oxysepala HOM05D007316 ORTHO05D009393 2.5e-16 88.2 60 68.3
Lsat_1_v5_gn_9_84180 Lactuca sativa HOM05D007316 ORTHO05D009393 2.5e-16 88.2 63 65.1
CSS0021742 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.0e-12 76.3 48 75.0
TAR362G0014 Trochodendron aralioides HOM05D007316 ORTHO05D009393 2.2e-12 75.1 43 79.1
ECA236G4186 Erigeron canadensis HOM05D007316 ORTHO05D009393 2.9e-12 74.7 64 57.8
CSS0008863 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 5.0e-12 73.9 43 83.7
CSS0044079 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 5.0e-12 73.9 43 83.7
CSS0028514 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 6.5e-12 73.6 43 81.4
CSS0044918 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 6.5e-12 73.6 43 81.4
CSS0047183 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 6.5e-12 73.6 43 81.4
vmacro19806 Vaccinium macrocarpon HOM05D007316 ORTHO05D009393 6.5e-12 73.6 50 70.0
CiPaw.05G216300 Carya illinoinensis HOM05D007316 ORTHO05D009393 3.2e-11 71.2 55 67.3
Nn7g37509 Nelumbo nucifera HOM05D007316 ORTHO05D009393 3.2e-11 71.2 42 81.0
CSS0047605 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 4.2e-11 70.9 43 79.1
CSS0025187 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 5.5e-11 70.5 43 76.7
Oeu034759.1 Olea europaea HOM05D007316 ORTHO05D009393 7.2e-11 70.1 43 74.4
Thhalv10019421m.g Eutrema salsugineum HOM05D007316 ORTHO05D009393 9.3e-11 69.7 59 59.3
Os07g0633800 Oryza sativa ssp. japonica HOM05D007316 ORTHO05D009393 9.3e-11 69.7 60 55.0
GSVIVG01026029001 Vitis vinifera HOM05D007316 ORTHO05D009393 1.6e-10 68.9 43 72.1
Actinidia11709 Actinidia chinensis HOM05D007316 ORTHO05D009393 1.8e-09 65.5 37 78.4
MBI18_g28941_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D004701 2.3e-09 65.1 44 68.2
Gorai.013G118500 Gossypium raimondii HOM05D007316 ORTHO05D009393 2.5e-08 61.6 62 53.2
Solyc08g006570.4 Solanum lycopersicum HOM05D007316 ORTHO05D009393 1.6e-07 58.9 39 64.1
EL10Ac8g18312 Beta vulgaris HOM05D007316 ORTHO05D009393 2.2e-07 58.5 47 59.6
Rhsim05G0117300 Rhododendron simsii HOM05D007316 ORTHO05D009393 2.8e-07 58.2 63 54.0
RhsimUnG0015700 Rhododendron simsii HOM05D007316 ORTHO05D009393 2.8e-07 58.2 63 54.0
CAN.G530.4 Capsicum annuum HOM05D007316 ORTHO05D009393 6.3e-07 57.0 35 68.6
Gohir.A13G102600 Gossypium hirsutum HOM05D007316 ORTHO05D009393 6.3e-07 57.0 62 50.0
Mapoly0010s0075 Marchantia polymorpha HOM05D007316 ORTHO05D009393 6.3e-07 57.0 59 45.8
AUR62021328 Chenopodium quinoa HOM05D007316 ORTHO05D009393 1.1e-06 56.2 46 54.3
Ah.09g230190 Amaranthus hybridus HOM05D007316 ORTHO05D009393 1.8e-06 55.5 48 54.2


User provided reference genes

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