Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022218 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 2.8e-263 911.4 453 100.0
Actinidia37922 Actinidia chinensis HOM05D005125 ORTHO05D006777 1.7e-212 742.7 436 83.5
Rhsim06G0007400 Rhododendron simsii HOM05D005125 ORTHO05D006777 1.4e-209 733.0 432 80.8
Dinv31939 Davidia involucrata HOM05D005125 ORTHO05D006777 6.8e-209 730.7 442 81.2
Hma1.2p1_0507F.1_g168460 Hydrangea macrophylla HOM05D005125 ORTHO05D006777 6.6e-204 714.1 422 82.5
vmacro21811 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 7.5e-200 700.7 474 74.7
GSVIVG01013360001 Vitis vinifera HOM05D005125 ORTHO05D006777 4.6e-197 691.4 433 77.4
Rhsim07G0254900 Rhododendron simsii HOM05D005125 ORTHO05D006777 6.0e-197 691.0 387 86.0
Cc10_g00670 Coffea canephora HOM05D005125 ORTHO05D006777 1.3e-191 673.3 437 75.5
Actinidia28601 Actinidia chinensis HOM05D005125 ORTHO05D006777 2.2e-191 672.5 418 79.7
Lj4A11T69 Lonicera japonica HOM05D005125 ORTHO05D006777 2.9e-191 672.2 401 81.0
TAR625G0173 Trochodendron aralioides HOM05D005125 ORTHO05D006777 4.1e-190 668.3 414 78.5
Cfa014076 Carpinus fangiana HOM05D005125 ORTHO05D006777 5.4e-190 667.9 440 74.5
Gohir.A01G105600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 5.4e-190 667.9 422 76.5
Prupe.1G354500 Prunus persica HOM05D005125 ORTHO05D006777 9.2e-190 667.2 430 75.3
Solyc04g082340.3 Solanum lycopersicum HOM05D005125 ORTHO05D006777 2.7e-189 665.6 436 75.0
Sopen04g035960 Solanum pennellii HOM05D005125 ORTHO05D006777 3.5e-189 665.2 436 74.8
Gohir.D01G091900 Gossypium hirsutum HOM05D005125 ORTHO05D006777 4.6e-189 664.8 422 76.3
Cpa.g.sc26.198 Carica papaya HOM05D005125 ORTHO05D006777 7.8e-189 664.1 422 75.1
CiPaw.07G138900 Carya illinoinensis HOM05D005125 ORTHO05D006777 1.0e-188 663.7 435 75.4
Gorai.002G117000 Gossypium raimondii HOM05D005125 ORTHO05D006777 1.0e-188 663.7 422 76.1
Duzib093G0577 Durio zibethinus HOM05D005125 ORTHO05D006777 2.3e-188 662.5 427 77.0
Thecc.08G058900 Theobroma cacao HOM05D005125 ORTHO05D006777 3.0e-188 662.1 424 76.7
Migut.C00961 Erythranthe guttata HOM05D005125 ORTHO05D006777 3.9e-188 661.8 425 76.0
Duzib116G0840 Durio zibethinus HOM05D005125 ORTHO05D006777 6.6e-188 661.0 415 78.6
Potri.005G250300 Populus trichocarpa HOM05D005125 ORTHO05D006777 1.5e-187 659.8 423 74.9
Manes.18G005400 Manihot esculenta HOM05D005125 ORTHO05D006777 3.3e-187 658.7 421 76.2
Manes.05G134400 Manihot esculenta HOM05D005125 ORTHO05D006777 4.3e-187 658.3 413 77.0
QL02p014036 Quercus lobata HOM05D005125 ORTHO05D006777 1.2e-186 656.8 423 75.4
Peaxi162Scf00893g00037 Petunia axillaris HOM05D005125 ORTHO05D006777 2.8e-186 655.6 426 75.6
Potri.002G010800 Populus trichocarpa HOM05D005125 ORTHO05D006777 2.8e-186 655.6 423 75.2
MD15G1002000 Malus domestica HOM05D005125 ORTHO05D006777 8.1e-186 654.1 435 74.5
Sabra05G0193900 Salix brachista HOM05D005125 ORTHO05D006777 1.8e-185 652.9 423 74.2
vmacro04403 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 8.9e-185 650.6 421 78.1
PGSC0003DMG400009979 Solanum tuberosum HOM05D005125 ORTHO05D006777 4.4e-184 648.3 408 77.0
TWI56G0714 Tripterygium wilfordii HOM05D005125 ORTHO05D006777 7.6e-184 647.5 407 77.1
FAN27G2626 Fragaria x ananassa HOM05D005125 ORTHO05D006777 1.3e-183 646.7 431 74.2
Haze_22773 Corylus avellana HOM05D005125 ORTHO05D006777 3.8e-183 645.2 386 79.8
MD08G1002400 Malus domestica HOM05D005125 ORTHO05D006777 3.8e-183 645.2 436 73.4
Ciclev10003241m.g Citrus clementina HOM05D005125 ORTHO05D006777 8.4e-183 644.0 425 74.6
FvH4_2g37450 Fragaria vesca HOM05D005125 ORTHO05D006777 1.1e-182 643.7 429 74.1
HanXRQChr06g0183991 Helianthus annuus HOM05D005125 ORTHO05D006777 1.9e-182 642.9 400 76.0
CiPaw.08G073000 Carya illinoinensis HOM05D005125 ORTHO05D006777 5.4e-182 641.3 436 72.7
Lsat_1_v5_gn_2_5181 Lactuca sativa HOM05D005125 ORTHO05D006777 7.1e-182 641.0 420 73.8
RcHm_v2.0_Chr6g0304271 Rosa chinensis HOM05D005125 ORTHO05D006777 9.2e-182 640.6 429 73.7
Atru.chr13.135 Acer truncatum HOM05D005125 ORTHO05D006777 2.1e-181 639.4 406 76.1
Nitab4.5_0000588g0110 Nicotiana tabacum HOM05D005125 ORTHO05D006777 2.7e-181 639.0 435 74.0
Glyma.06G018200 Glycine max HOM05D005125 ORTHO05D006777 3.5e-181 638.6 405 76.3
FAN20G1306 Fragaria x ananassa HOM05D005125 ORTHO05D006777 4.6e-181 638.3 431 73.5
SalBow7G1095 Salvia bowleyana HOM05D005125 ORTHO05D006777 4.6e-181 638.3 438 72.4
Ca_15433_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 1.0e-180 637.1 434 72.6
CANSAT25G1708 Cannabis sativa HOM05D005125 ORTHO05D006777 3.0e-180 635.6 434 71.7
Glyma.04G017900 Glycine max HOM05D005125 ORTHO05D006777 3.9e-180 635.2 433 72.7
Medtr3g115290 Medicago truncatula HOM05D005125 ORTHO05D006777 1.1e-179 633.6 431 73.3
FAN15G0126 Fragaria x ananassa HOM05D005125 ORTHO05D006777 2.5e-179 632.5 445 71.7
Eucgr.L00923 Eucalyptus grandis HOM05D005125 ORTHO05D006777 1.6e-178 629.8 426 72.5
Aqoxy6G01728 Aquilegia oxysepala HOM05D005125 ORTHO05D006777 2.4e-177 625.9 416 73.3
CAN.G311.115 Capsicum annuum HOM05D005125 ORTHO05D006777 2.4e-177 625.9 391 77.7
PSO541G3228 Papaver somniferum HOM05D005125 ORTHO05D006777 2.4e-177 625.9 413 73.8
THA.LOC104813172 Tarenaya hassleriana HOM05D005125 ORTHO05D006777 5.2e-177 624.8 412 72.1
Lalb_Chr11g0061631 Lupinus albus HOM05D005125 ORTHO05D006777 9.0e-177 624.0 434 71.4
PSO675G8084 Papaver somniferum HOM05D005125 ORTHO05D006777 7.6e-176 620.9 413 73.1
ClCG08G009440 Citrullus lanatus HOM05D005125 ORTHO05D006777 1.3e-175 620.2 399 75.7
Lj1g0005535 Lotus japonicus HOM05D005125 ORTHO05D006777 1.7e-175 619.8 400 75.0
PGR083G1107 Punica granatum HOM05D005125 ORTHO05D006777 3.8e-175 618.6 435 71.5
CSS0019336 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 4.9e-175 618.2 300 100.0
TPR.G38202 Trifolium pratense HOM05D005125 ORTHO05D006777 8.4e-175 617.5 422 71.6
ECA238G0848 Erigeron canadensis HOM05D005125 ORTHO05D006777 3.2e-174 615.5 386 76.7
Phvul.009G010800 Phaseolus vulgaris HOM05D005125 ORTHO05D006777 7.1e-174 614.4 433 70.4
SGA_v2.0_scaffold108G30863 Striga asiatica HOM05D005125 ORTHO05D006777 9.3e-174 614.0 459 68.4
Lalb_Chr23g0265791 Lupinus albus HOM05D005125 ORTHO05D006777 1.3e-172 610.1 434 70.3
CsaV3_6G031580 Cucumis sativus L. HOM05D005125 ORTHO05D006777 3.0e-172 609.0 427 71.7
A09p19570 Brassica napus HOM05D005125 ORTHO05D006777 1.9e-171 606.3 420 70.2
BraA09t37570Z Brassica rapa HOM05D005125 ORTHO05D006777 3.3e-171 605.5 420 70.2
BcaB07g31085 Brassica carinata HOM05D005125 ORTHO05D006777 4.3e-171 605.1 411 71.8
BcaC04g22006 Brassica carinata HOM05D005125 ORTHO05D006777 4.3e-171 605.1 419 70.9
C09p24930 Brassica napus HOM05D005125 ORTHO05D006777 4.3e-171 605.1 419 70.9
Aa31LG9G12440 Aethionema arabicum HOM05D005125 ORTHO05D006777 1.6e-170 603.2 436 68.1
AL8G19280 Arabidopsis lyrata HOM05D005125 ORTHO05D006777 1.6e-170 603.2 400 72.8
AT5G42320 Arabidopsis thaliana HOM05D005125 ORTHO05D006777 2.1e-170 602.8 426 70.4
EL10Ac1g01960 Beta vulgaris HOM05D005125 ORTHO05D006777 6.2e-170 601.3 429 68.5
Duzib041G0467 Durio zibethinus HOM05D005125 ORTHO05D006777 1.4e-169 600.1 415 72.3
arahy.Tifrunner.gnm1.ann1.1X7ZBM Arachis hypogaea HOM05D005125 ORTHO05D006777 1.2e-168 597.0 435 69.2
arahy.Tifrunner.gnm1.ann1.VXG7Z6 Arachis hypogaea HOM05D005125 ORTHO05D006777 1.5e-168 596.7 435 69.2
Carub.0008s0686 Capsella rubella HOM05D005125 ORTHO05D006777 3.4e-168 595.5 386 73.1
CARHR284930 Cardamine hirsuta HOM05D005125 ORTHO05D006777 4.5e-168 595.1 426 68.3
MD12G1003300 Malus domestica HOM05D005125 ORTHO05D006777 7.6e-168 594.3 483 64.6
Lsat_1_v5_gn_8_26201 Lactuca sativa HOM05D005125 ORTHO05D006777 1.3e-167 593.6 422 68.2
Sp7g08250 Schrenkiella parvula HOM05D005125 ORTHO05D006777 2.1e-165 586.3 415 68.4
Sed0024407 Sechium edule HOM05D005125 ORTHO05D006777 1.8e-164 583.2 388 73.7
Ah.00g000800 Amaranthus hybridus HOM05D005125 ORTHO05D006777 2.8e-162 575.9 435 65.7
EL10Ac7g16836 Beta vulgaris HOM05D005125 ORTHO05D006777 2.0e-160 569.7 394 70.3
unitig_747.g21516 Utricularia gibba HOM05D005125 ORTHO05D006777 9.9e-160 567.4 427 65.6
Nn5g30942 Nelumbo nucifera HOM05D005125 ORTHO05D006777 1.4e-158 563.5 398 70.4
AUR62036871 Chenopodium quinoa HOM05D005125 ORTHO05D006777 1.9e-158 563.1 391 68.8
DCAR_016769 Daucus carota HOM05D005125 ORTHO05D006777 5.5e-158 561.6 386 70.7
Ca_15458_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 1.6e-154 550.1 338 76.3
Hund05112 Selenicereus undatus HOM05D005125 ORTHO05D006777 2.6e-152 542.7 358 71.5
Eucgr.E03516 Eucalyptus grandis HOM05D005125 ORTHO05D006777 8.4e-151 537.7 430 65.1
MBI08_g41521_MAGBIO Magnolia biondii HOM05D005125 ORTHO05D006777 2.3e-148 529.6 400 67.0
VMungo1309G1587 Vigna mungo HOM05D005125 ORTHO05D006777 2.3e-148 529.6 359 70.8
Os02g0119300 Oryza sativa ssp. japonica HOM05D005125 ORTHO05D006777 3.8e-143 512.3 388 64.2
Thhalv10027780m.g Eutrema salsugineum HOM05D005125 ORTHO05D006777 1.4e-142 510.4 324 74.4
Zm00001eb209310 Zea mays HOM05D005125 ORTHO05D006777 4.2e-142 508.8 426 61.3
MELO3C026539.2 Cucumis melo HOM05D005125 ORTHO05D006777 3.6e-141 505.8 319 74.9
HPP92_007117 Vanilla planifolia HOM05D005125 ORTHO05D006777 3.7e-138 495.7 390 63.6
ATR0661G305 Amborella trichopoda HOM05D005125 ORTHO05D006777 8.2e-138 494.6 408 60.3
Sc15g0004430 Simmondsia chinensis HOM05D005125 ORTHO05D006777 6.9e-137 491.5 295 77.6
Gorai.009G188100 Gossypium raimondii HOM05D005125 ORTHO05D006777 3.2e-134 482.6 345 66.7
CDE05G1644 Ceratophyllum demersum HOM05D005125 ORTHO05D006777 7.2e-134 481.5 374 62.8
Gohir.D05G182800 Gossypium hirsutum HOM05D005125 ORTHO05D006777 2.7e-133 479.6 345 66.1
Dinv05534 Davidia involucrata HOM05D005125 ORTHO05D006777 1.1e-131 474.2 286 82.2
Gohir.A05G179600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 7.4e-131 471.5 345 65.5
SHI07997 Sapria himalayana HOM05D005125 ORTHO05D006777 1.4e-129 467.2 424 57.1
COL.COLO4_06662 Corchorus olitorius HOM05D005125 ORTHO05D006777 3.0e-124 449.5 281 76.9
Psat5g159120 Pisum sativum HOM05D005125 ORTHO05D006777 1.6e-109 400.6 280 70.0
AagrBONN_evm.TU.Sc2ySwM_362.2863 Anthoceros agrestis HOM05D005125 ORTHO05D006777 3.1e-105 386.3 314 58.9
Mapoly0045s0063 Marchantia polymorpha HOM05D005125 ORTHO05D006777 2.0e-104 383.6 304 58.9
ECA238G3411 Erigeron canadensis HOM05D005125 ORTHO05D006777 1.1e-94 351.3 204 77.9
SMO358G0159 Selaginella moellendorffii HOM05D005125 ORTHO05D006777 3.3e-94 349.7 277 61.0
Pp3c20_16570 Physcomitrium patens HOM05D005125 ORTHO05D006777 4.7e-93 345.9 404 45.3
SGA_v2.0_scaffold195G40773 Striga asiatica HOM05D005125 ORTHO05D006777 4.6e-80 302.8 202 70.8
BcaNung05255 Brassica carinata HOM05D005125 ORTHO05D006777 1.6e-77 294.3 234 64.5
Cre11.g467631 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D006777 2.2e-74 283.9 316 46.5
PRCOL_00006814 Prasinoderma coloniale HOM05D005125 ORTHO05D006777 1.2e-69 268.1 242 52.5
SEGI_03459 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 1.2e-69 268.1 231 57.1
MD00G1076900 Malus domestica HOM05D005125 ORTHO05D006777 2.0e-67 260.8 230 61.3
BcaNung05254 Brassica carinata HOM05D005125 ORTHO05D006777 9.2e-65 251.9 169 69.8
Oeu056206.2 Olea europaea HOM05D005125 ORTHO05D006777 1.9e-62 244.2 145 81.4
ECA233G3085 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.9e-49 201.1 120 74.2
BolC9t55384H Brassica oleracea HOM05D005125 ORTHO05D006777 2.1e-48 197.6 170 63.5
SEGI_37631 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 1.6e-45 188.0 135 60.0
SGA_v2.0_scaffold83G26467 Striga asiatica HOM05D005125 ORTHO05D006777 4.6e-40 169.9 291 39.5
MCO16G405 Micromonas commoda HOM05D005125 ORTHO05D006777 8.2e-37 159.1 140 51.4
Cc00_g07920 Coffea canephora HOM05D005125 ORTHO05D006777 7.6e-35 152.5 156 56.4
ECA238G2450 Erigeron canadensis HOM05D000240 ORTHO05D002721 1.9e-33 147.9 181 45.3
Oeu035185.1 Olea europaea HOM05D005125 ORTHO05D006777 9.7e-30 135.6 92 77.2
PRCOL_00005708 Prasinoderma coloniale HOM05D005125 ORTHO05D034490 4.1e-28 130.2 388 27.3
Sc15g0004440 Simmondsia chinensis HOM05D005125 ORTHO05D006777 9.0e-28 129.0 122 54.1
CSS0020606 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D109310 5.9e-27 126.3 66 100.0
Cre16.g668950 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D034490 2.1e-24 117.9 256 30.5
Lsat_1_v5_gn_1_87521 Lactuca sativa HOM05D005125 ORTHO05D007904 5.3e-20 103.2 63 69.8
Cc10_g14360 Coffea canephora HOM05D005125 ORTHO05D006777 1.6e-16 91.7 58 72.4
TPR.G33884 Trifolium pratense HOM05D005125 ORTHO05D006777 6.1e-16 89.7 52 75.0
ECA233G5321 Erigeron canadensis HOM05D000003 ORTHO05D000004 1.7e-13 81.6 54 68.5
C04p25390 Brassica napus HOM05D005125 ORTHO05D041222 4.7e-08 63.5 76 40.8
BolC4t24047H Brassica oleracea HOM05D005125 ORTHO05D041222 4.7e-08 63.5 76 40.8


User provided reference genes

Program Settings