Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022206 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 3.7e-185 651.4 322 100.0
CSS0018173 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 6.0e-159 564.3 319 89.3
Actinidia36520 Actinidia chinensis HOM05D006685 ORTHO05D008244 6.7e-126 454.5 326 71.2
Dinv26751 Davidia involucrata HOM05D006685 ORTHO05D008244 1.0e-89 334.3 323 56.7
vmacro05297 Vaccinium macrocarpon HOM05D006685 ORTHO05D008244 1.5e-88 330.5 318 57.2
Lj7A20T60 Lonicera japonica HOM05D006685 ORTHO05D008244 1.6e-87 327.0 322 54.7
Lj7A17G42 Lonicera japonica HOM05D006685 ORTHO05D008244 5.7e-77 292.0 322 50.6
Haze_15195 Corylus avellana HOM05D006685 ORTHO05D008244 3.7e-76 289.3 320 48.4
CiPaw.02G011900 Carya illinoinensis HOM05D006685 ORTHO05D008244 4.9e-76 288.9 321 46.4
TAR376G1120 Trochodendron aralioides HOM05D006685 ORTHO05D008244 2.0e-74 283.5 350 46.6
QL06p043714 Quercus lobata HOM05D006685 ORTHO05D008244 5.9e-74 282.0 331 47.4
Cfa004216 Carpinus fangiana HOM05D006685 ORTHO05D008244 1.3e-73 280.8 321 47.4
Hma1.2p1_0546F.1_g176200 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 2.6e-69 266.5 322 46.9
Hma1.2p1_0546F.1_g176210 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 1.2e-66 257.7 246 53.3
Ciclev10025347m.g Citrus clementina HOM05D006685 ORTHO05D008244 4.6e-66 255.8 320 43.1
Manes.13G130000 Manihot esculenta HOM05D006685 ORTHO05D008244 1.0e-65 254.6 325 45.8
Atru.chr3.446 Acer truncatum HOM05D006685 ORTHO05D008244 2.3e-65 253.4 346 42.8
FAN28G0684 Fragaria x ananassa HOM05D006685 ORTHO05D008244 5.0e-65 252.3 320 42.8
Potri.005G133500 Populus trichocarpa HOM05D006685 ORTHO05D008244 5.0e-65 252.3 324 44.1
Nn5g29383 Nelumbo nucifera HOM05D006685 ORTHO05D008244 1.1e-64 251.1 324 43.8
FAN26G3106 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.5e-64 250.8 320 42.5
FAN28G1646 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.5e-64 250.8 320 42.5
FAN23G0082 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.9e-64 250.4 320 42.8
Sabra05G0107200 Salix brachista HOM05D006685 ORTHO05D008244 5.6e-64 248.8 325 43.7
RcHm_v2.0_Chr2g0103811 Rosa chinensis HOM05D006685 ORTHO05D008244 4.7e-63 245.7 320 42.2
FvH4_1g14850 Fragaria vesca HOM05D006685 ORTHO05D008244 8.9e-62 241.5 320 41.6
MD15G1276100 Malus domestica HOM05D006685 ORTHO05D008244 7.5e-61 238.4 337 40.7
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 2.9e-60 236.5 306 42.8
CANSAT01G2373 Cannabis sativa HOM05D006685 ORTHO05D008244 1.1e-59 234.6 323 42.4
Thecc.01G048300 Theobroma cacao HOM05D006685 ORTHO05D008244 2.4e-59 233.4 319 41.1
RcHm_v2.0_Chr1g0329901 Rosa chinensis HOM05D006685 ORTHO05D008244 4.1e-59 232.6 324 40.1
Aqoxy6G00915 Aquilegia oxysepala HOM05D006685 ORTHO05D008244 7.0e-59 231.9 320 41.6
Duzib187G0300 Durio zibethinus HOM05D006685 ORTHO05D008244 2.3e-57 226.9 321 41.4
Nitab4.5_0001014g0040 Nicotiana tabacum HOM05D006685 ORTHO05D008244 5.0e-57 225.7 320 39.7
Sed0001332 Sechium edule HOM05D006685 ORTHO05D008244 5.0e-57 225.7 323 38.1
Psat4g089520 Pisum sativum HOM05D006685 ORTHO05D008244 2.5e-56 223.4 320 39.1
Cc07_g05580 Coffea canephora HOM05D006685 ORTHO05D008244 3.3e-56 223.0 324 41.4
Sopen02g034940 Solanum pennellii HOM05D006685 ORTHO05D008244 7.3e-56 221.9 322 37.9
Ca_22212_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 9.5e-56 221.5 316 38.9
Ca_22230_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 9.5e-56 221.5 316 38.9
Migut.H00483 Erythranthe guttata HOM05D006685 ORTHO05D008244 1.2e-55 221.1 318 41.8
TPR.G30340 Trifolium pratense HOM05D006685 ORTHO05D008244 2.1e-55 220.3 325 40.0
COL.COLO4_11329 Corchorus olitorius HOM05D006685 ORTHO05D008244 1.1e-54 218.0 317 39.4
PGSC0003DMG402010073 Solanum tuberosum HOM05D006685 ORTHO05D008244 1.1e-54 218.0 322 39.1
Nitab4.5_0000108g0340 Nicotiana tabacum HOM05D006685 ORTHO05D008244 1.4e-54 217.6 320 38.8
Solyc02g090260.3 Solanum lycopersicum HOM05D006685 ORTHO05D008244 1.5e-53 214.2 322 36.6
SGA_v2.0_scaffold204G41611 Striga asiatica HOM05D006685 ORTHO05D008244 9.8e-53 211.5 323 39.6
Gohir.A12G068800 Gossypium hirsutum HOM05D006685 ORTHO05D008244 1.3e-52 211.1 319 39.2
Hund16306 Selenicereus undatus HOM05D006685 ORTHO05D008244 1.3e-52 211.1 322 38.5
Lj4g0023849 Lotus japonicus HOM05D006685 ORTHO05D008244 2.2e-52 210.3 317 36.9
Cpa.g.sc76.25 Carica papaya HOM05D006685 ORTHO05D008244 6.4e-52 208.8 252 46.0
Gohir.D12G090400 Gossypium hirsutum HOM05D006685 ORTHO05D008244 1.4e-51 207.6 319 38.2
Gorai.008G072600 Gossypium raimondii HOM05D006685 ORTHO05D008244 1.9e-51 207.2 319 38.2
Medtr8g079100 Medicago truncatula HOM05D006685 ORTHO05D008244 2.4e-51 206.8 317 37.2
Lalb_Chr16g0388451 Lupinus albus HOM05D006685 ORTHO05D008244 4.6e-50 202.6 321 35.8
VMungo0251G1647 Vigna mungo HOM05D006685 ORTHO05D008244 6.0e-50 202.2 318 35.8
Glyma.02G062800 Glycine max HOM05D006685 ORTHO05D008244 7.8e-50 201.8 318 36.2
Prupe.7G141900 Prunus persica HOM05D006685 ORTHO05D008244 7.8e-50 201.8 320 38.8
PGR119G2375 Punica granatum HOM05D006685 ORTHO05D008244 5.1e-49 199.1 321 36.4
CAN.G836.36 Capsicum annuum HOM05D006685 ORTHO05D008244 6.6e-49 198.7 320 36.9
DCAR_025691 Daucus carota HOM05D006685 ORTHO05D008244 1.1e-48 198.0 243 43.6
HanXRQChr12g0378291 Helianthus annuus HOM05D006685 ORTHO05D008244 1.5e-48 197.6 322 38.5
PSO541G3044 Papaver somniferum HOM05D006685 ORTHO05D008244 1.6e-47 194.1 323 36.8
AUR62001974 Chenopodium quinoa HOM05D006685 ORTHO05D008244 2.8e-47 193.4 316 37.0
CsaV3_2G016900 Cucumis sativus L. HOM05D006685 ORTHO05D008244 6.2e-47 192.2 323 35.0
Sc03g0001280 Simmondsia chinensis HOM05D006685 ORTHO05D008244 6.2e-47 192.2 320 35.6
ClCG02G012840 Citrullus lanatus HOM05D006685 ORTHO05D008244 8.1e-47 191.8 321 34.6
AT3G50430 Arabidopsis thaliana HOM05D006685 ORTHO05D008244 3.1e-46 189.9 323 38.4
Phvul.003G248400 Phaseolus vulgaris HOM05D006685 ORTHO05D008244 8.9e-46 188.3 317 33.8
ECA246G1174 Erigeron canadensis HOM05D006685 ORTHO05D008244 2.9e-44 183.3 329 34.7
CARHR159940 Cardamine hirsuta HOM05D006685 ORTHO05D008244 6.4e-44 182.2 321 37.4
MELO3C020890.2 Cucumis melo HOM05D006685 ORTHO05D008244 8.4e-44 181.8 339 33.0
Thhalv10010194m.g Eutrema salsugineum HOM05D006685 ORTHO05D008244 1.4e-43 181.0 321 36.8
Sp5g11730 Schrenkiella parvula HOM05D006685 ORTHO05D008244 4.6e-42 176.0 321 35.8
AL5G30586 Arabidopsis lyrata HOM05D006685 ORTHO05D008244 1.3e-41 174.5 332 35.2
MBI16_g19900_MAGBIO Magnolia biondii HOM05D006685 ORTHO05D008244 4.3e-40 169.5 281 37.0
Peaxi162Scf00993g00018 Petunia axillaris HOM05D006685 ORTHO05D008244 6.2e-39 165.6 225 41.8
THA.LOC104821263 Tarenaya hassleriana HOM05D006685 ORTHO05D008244 1.1e-38 164.9 339 35.1
Lsat_1_v5_gn_3_92360 Lactuca sativa HOM05D006685 ORTHO05D008244 3.1e-38 163.3 327 35.8
Aa31LG4G18660 Aethionema arabicum HOM05D006685 ORTHO05D008244 2.6e-37 160.2 353 33.1
ATR0733G107 Amborella trichopoda HOM05D006685 ORTHO05D008244 3.4e-37 159.8 340 31.8
BcaB05g23218 Brassica carinata HOM05D006685 ORTHO05D008244 5.8e-37 159.1 295 36.3
arahy.Tifrunner.gnm1.ann1.5EE2XW Arachis hypogaea HOM05D006685 ORTHO05D008244 2.4e-35 153.7 234 40.6
C01p29820 Brassica napus HOM05D006685 ORTHO05D008244 9.3e-35 151.8 321 34.6
BolC1t02922H Brassica oleracea HOM05D006685 ORTHO05D008244 9.3e-35 151.8 321 34.6
BcaC09g50030 Brassica carinata HOM05D006685 ORTHO05D008244 1.6e-34 151.0 322 34.5
A01p24130 Brassica napus HOM05D006685 ORTHO05D008244 3.5e-34 149.8 318 34.3
BraA01t02325Z Brassica rapa HOM05D006685 ORTHO05D008244 1.7e-33 147.5 318 33.6
MD06G1092200 Malus domestica HOM05D006685 ORTHO05D008244 2.2e-28 130.6 165 43.0
Eucgr.I01015 Eucalyptus grandis HOM05D006685 ORTHO05D008244 2.1e-26 124.0 233 34.3
CDE07G1850 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 4.5e-21 106.3 219 34.2
HPP92_017771 Vanilla planifolia HOM05D006685 ORTHO05D008244 2.1e-18 97.4 302 27.2
SEGI_02281 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 2.3e-17 94.0 352 24.1
Carub.0005s1677 Capsella rubella HOM05D006685 ORTHO05D008244 3.0e-17 93.6 143 36.4
Zm00001eb209640 Zea mays HOM05D006685 ORTHO05D008244 2.8e-15 87.0 315 25.4
Zm00001eb209650 Zea mays HOM05D006685 ORTHO05D008244 2.8e-15 87.0 315 25.4
Os07g0120700 Oryza sativa ssp. japonica HOM05D006685 ORTHO05D008244 9.0e-14 82.0 332 24.4
GSVIVG01036190001 Vitis vinifera HOM05D006685 ORTHO05D008244 3.8e-12 76.6 84 45.2
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 1.1e-11 75.1 160 33.8
PGR044G2727 Punica granatum HOM05D006685 ORTHO05D008244 1.2e-10 71.6 74 44.6
SEGI_32623 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 8.7e-09 65.5 293 23.9
SEGI_38886 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 3.1e-06 57.0 76 31.6


User provided reference genes

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