Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022193 Camellia sinensis var. sinensis HOM05D000267 ORTHO05D009944 0.0e+00 1107.0 540 100.0
Rhsim11G0193400 Rhododendron simsii HOM05D000267 ORTHO05D009944 1.5e-263 912.5 593 78.1
Actinidia18043 Actinidia chinensis HOM05D000267 ORTHO05D002764 1.3e-262 909.4 519 84.0
TAR628G1652 Trochodendron aralioides HOM05D000267 ORTHO05D009944 8.6e-243 843.6 537 74.1
GSVIVG01023990001 Vitis vinifera HOM05D000267 ORTHO05D009944 1.4e-240 836.3 541 74.9
QL11p051524 Quercus lobata HOM05D000267 ORTHO05D009944 2.3e-235 818.9 544 73.0
Dinv41920 Davidia involucrata HOM05D000267 ORTHO05D002764 1.1e-234 816.6 490 80.4
CiPaw.05G084800 Carya illinoinensis HOM05D000267 ORTHO05D009944 9.5e-234 813.5 573 70.3
Migut.B00061 Erythranthe guttata HOM05D000267 ORTHO05D009944 3.1e-232 808.5 541 69.9
vmacro02289 Vaccinium macrocarpon HOM05D000267 ORTHO05D009944 3.1e-232 808.5 453 86.3
Prupe.8G168300 Prunus persica HOM05D000267 ORTHO05D009944 5.2e-232 807.7 542 72.9
Thecc.02G056000 Theobroma cacao HOM05D000267 ORTHO05D009944 7.0e-229 797.3 523 73.4
EL10Ac9g21344 Beta vulgaris HOM05D000267 ORTHO05D009944 5.0e-227 791.2 523 71.9
Cfa005283 Carpinus fangiana HOM05D000267 ORTHO05D002764 1.9e-226 789.3 541 72.1
Atru.chr5.3400 Acer truncatum HOM05D000267 ORTHO05D009944 1.6e-225 786.2 541 70.6
TWI79G0018 Tripterygium wilfordii HOM05D000267 ORTHO05D009944 8.9e-224 780.4 543 69.1
Manes.11G097600 Manihot esculenta HOM05D000267 ORTHO05D009944 5.8e-223 777.7 545 69.2
Duzib132G0985 Durio zibethinus HOM05D000267 ORTHO05D009944 1.3e-222 776.5 537 70.2
Cc09_g10270 Coffea canephora HOM05D000267 ORTHO05D009944 1.7e-222 776.2 544 71.5
Sc14g0002320 Simmondsia chinensis HOM05D000267 ORTHO05D009944 3.2e-221 771.9 544 68.9
MD05G1124600 Malus domestica HOM05D000267 ORTHO05D009944 5.4e-221 771.2 551 69.9
Gorai.008G037400 Gossypium raimondii HOM05D000267 ORTHO05D009944 4.6e-220 768.1 489 73.6
AUR62013005 Chenopodium quinoa HOM05D000267 ORTHO05D009944 6.6e-219 764.2 552 66.7
Gohir.D12G036200 Gossypium hirsutum HOM05D000267 ORTHO05D009944 9.5e-218 760.4 489 73.0
FvH4_2g15600 Fragaria vesca HOM05D000267 ORTHO05D009944 1.2e-217 760.0 551 68.2
FAN20G0365 Fragaria x ananassa HOM05D000267 ORTHO05D009944 1.8e-216 756.1 501 72.9
COL.COLO4_17372 Corchorus olitorius HOM05D000267 ORTHO05D009944 3.1e-216 755.4 493 74.0
AUR62010015 Chenopodium quinoa HOM05D000267 ORTHO05D009944 9.9e-215 750.4 494 70.9
Potri.004G177400 Populus trichocarpa HOM05D000267 ORTHO05D009944 2.2e-214 749.2 548 66.2
Nitab4.5_0000079g0250 Nicotiana tabacum HOM05D000267 ORTHO05D000298 8.4e-214 747.3 516 69.4
THA.LOC104807804 Tarenaya hassleriana HOM05D000267 ORTHO05D009944 1.6e-212 743.0 497 68.8
CsaV3_2G016240 Cucumis sativus L. HOM05D000267 ORTHO05D009944 6.0e-212 741.1 493 70.0
ClCG02G012080 Citrullus lanatus HOM05D000267 ORTHO05D009944 3.9e-211 738.4 521 66.8
Hma1.2p1_0163F.1_g072670 Hydrangea macrophylla HOM05D000267 ORTHO05D009944 4.3e-210 734.9 442 79.9
Cpa.g.sc20.108 Carica papaya HOM05D000267 ORTHO05D009944 4.0e-208 728.4 547 64.5
Eucgr.I01454 Eucalyptus grandis HOM05D000267 ORTHO05D009944 1.2e-207 726.9 498 69.9
FAN24G1303 Fragaria x ananassa HOM05D000267 ORTHO05D009944 1.1e-205 720.3 645 58.4
MBI05_g00165_MAGBIO Magnolia biondii HOM05D000267 ORTHO05D009944 1.1e-205 720.3 500 67.0
AUR62015150 Chenopodium quinoa HOM05D000267 ORTHO05D009944 1.0e-203 713.8 494 69.2
Nitab4.5_0007484g0010 Nicotiana tabacum HOM05D000267 ORTHO05D009944 3.9e-203 711.8 533 65.3
FAN27G0796 Fragaria x ananassa HOM05D000267 ORTHO05D009944 3.4e-199 698.7 598 61.0
ATR0661G537 Amborella trichopoda HOM05D000267 ORTHO05D009944 2.3e-195 686.0 490 66.1
Sed0004064 Sechium edule HOM05D000267 ORTHO05D009944 1.6e-193 679.9 495 65.7
CANSAT25G1222 Cannabis sativa HOM05D000267 ORTHO05D009944 2.2e-190 669.5 429 73.4
FAN15G3022 Fragaria x ananassa HOM05D000267 ORTHO05D009944 2.9e-190 669.1 558 63.1
AagrBONN_evm.TU.Sc2ySwM_344.2069 Anthoceros agrestis HOM05D000267 ORTHO05D009944 4.9e-190 668.3 497 61.4
Pp3c3_37260 Physcomitrium patens HOM05D000267 ORTHO05D009944 1.4e-189 666.8 498 61.4
Haze_02110 Corylus avellana HOM05D000267 ORTHO05D009944 1.9e-189 666.4 545 64.0
Ciclev10028457m.g Citrus clementina HOM05D000267 ORTHO05D009944 3.9e-187 658.7 449 70.4
SMO367G0708 Selaginella moellendorffii HOM05D000267 ORTHO05D009944 3.9e-187 658.7 486 63.6
Oeu015554.3 Olea europaea HOM05D000267 ORTHO05D002764 9.6e-186 654.1 539 60.5
MELO3C020832.2 Cucumis melo HOM05D000267 ORTHO05D009944 6.2e-185 651.4 504 63.3
Mapoly0001s0154 Marchantia polymorpha HOM05D000267 ORTHO05D009944 8.2e-185 651.0 491 62.1
SalBow1G0833 Salvia bowleyana HOM05D000267 ORTHO05D009944 2.9e-182 642.5 556 58.6
Gohir.A12G036400 Gossypium hirsutum HOM05D000267 ORTHO05D009944 3.7e-177 625.5 409 71.6
Nn5g30837 Nelumbo nucifera HOM05D000267 ORTHO05D009944 2.6e-175 619.4 436 66.1
Os04g0560500 Oryza sativa ssp. japonica HOM05D000267 ORTHO05D009944 2.7e-172 609.4 510 55.5
Zm00001eb074100 Zea mays HOM05D000267 ORTHO05D009944 8.0e-156 554.7 501 52.1
Atru.chr5.3388 Acer truncatum HOM05D000267 ORTHO05D009944 3.6e-140 502.7 431 61.0
Ah.01g023200 Amaranthus hybridus HOM05D000267 ORTHO05D009944 5.0e-134 482.3 464 53.0
Pp3c21_13310 Physcomitrium patens HOM05D000267 ORTHO05D009944 1.2e-119 434.5 492 45.1
RcHm_v2.0_Chr6g0278781 Rosa chinensis HOM05D000267 ORTHO05D009944 1.0e-118 431.4 328 65.2
Actinidia20524 Actinidia chinensis HOM05D000267 ORTHO05D002764 4.4e-114 416.0 551 47.9
Cre13.g587500 Chlamydomonas reinhardtii HOM05D000267 ORTHO05D009944 7.3e-101 372.1 501 40.1
Atru.chr5.3392 Acer truncatum HOM05D000267 ORTHO05D009944 2.1e-95 354.0 304 60.2
HPP92_001748 Vanilla planifolia HOM05D000267 ORTHO05D009944 1.3e-94 351.3 277 57.0
Peaxi162Scf00078g01332 Petunia axillaris HOM05D000267 ORTHO05D009944 1.8e-91 340.9 242 64.5
Cre17.g719500 Chlamydomonas reinhardtii HOM05D000267 ORTHO05D009944 3.8e-89 333.2 516 38.6
RcHm_v2.0_Chr6g0255801 Rosa chinensis HOM05D000267 ORTHO05D009944 4.2e-88 329.7 274 62.0
Hund06449 Selenicereus undatus HOM05D000267 ORTHO05D009944 9.3e-88 328.6 212 72.2
RcHm_v2.0_Chr6g0278801 Rosa chinensis HOM05D000267 ORTHO05D009944 4.8e-84 316.2 190 78.4
MCO05G576 Micromonas commoda HOM05D000267 ORTHO05D009944 6.0e-79 299.3 491 37.7
AagrBONN_evm.TU.Sc2ySwM_228.1198 Anthoceros agrestis HOM05D000267 ORTHO05D009944 4.3e-69 266.5 361 39.9
MCO05G735 Micromonas commoda HOM05D000267 ORTHO05D009944 1.4e-64 251.5 519 33.7
Peaxi162Scf00078g01331 Petunia axillaris HOM05D000267 ORTHO05D009944 5.5e-56 223.0 127 84.3
PRCOL_00001600 Prasinoderma coloniale HOM05D000267 ORTHO05D009944 3.9e-54 216.9 516 31.0
SEGI_17018 Sequoiadendron giganteum HOM05D000267 ORTHO05D009944 8.5e-49 199.1 201 47.3
Sabra04G0119300 Salix brachista HOM05D000267 ORTHO05D009944 4.5e-42 176.8 188 47.9
SEGI_10216 Sequoiadendron giganteum HOM05D000267 ORTHO05D009944 1.1e-40 172.2 238 37.8
HPP92_001749 Vanilla planifolia HOM05D000267 ORTHO05D009944 8.0e-31 139.4 85 76.5
Lj9A400T56 Lonicera japonica HOM05D000267 ORTHO05D009944 5.7e-29 133.3 73 89.0
RcHm_v2.0_Chr6g0255791 Rosa chinensis HOM05D000267 ORTHO05D009944 2.8e-28 131.0 97 61.9
Thecc.02G059600 Theobroma cacao HOM05D000267 ORTHO05D009944 3.8e-25 120.6 80 76.2
CARHR111810 Cardamine hirsuta HOM05D000267 ORTHO05D009944 2.7e-23 114.4 90 58.9
vmacro02288 Vaccinium macrocarpon HOM05D000267 ORTHO05D009944 1.4e-22 112.1 97 64.9
SEGI_00421 Sequoiadendron giganteum HOM05D000267 ORTHO05D009944 6.3e-20 103.2 179 34.1
SEGI_37732 Sequoiadendron giganteum HOM05D000267 ORTHO05D009944 7.7e-18 96.3 94 47.9
MCO15G399 Micromonas commoda HOM05D002360 ORTHO05D006971 1.0e-17 95.9 493 21.1
RcHm_v2.0_Chr2g0123001 Rosa chinensis HOM05D000267 ORTHO05D009944 6.1e-15 86.7 70 57.1
Cre12.g509650 Chlamydomonas reinhardtii HOM05D002360 ORTHO05D006971 1.0e-14 85.9 472 21.4
Cre07.g314150 Chlamydomonas reinhardtii HOM05D002360 ORTHO05D006297 5.4e-11 73.6 466 21.2
MCO04G494 Micromonas commoda HOM05D002360 ORTHO05D006971 3.5e-10 70.9 490 21.0


User provided reference genes

Program Settings