Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022164 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 1.2e-55 219.5 110 100.0
CSS0011379 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 1.4e-54 216.1 110 99.1
Dinv28347 Davidia involucrata HOM05D004948 ORTHO05D005824 9.9e-21 103.6 93 63.4
Oeu037114.1 Olea europaea HOM05D004948 ORTHO05D005824 9.9e-21 103.6 104 60.6
vmacro06582 Vaccinium macrocarpon HOM05D004948 ORTHO05D005824 9.9e-21 103.6 108 60.2
Hma1.2p1_0142F.1_g064080 Hydrangea macrophylla HOM05D004948 ORTHO05D005824 1.3e-20 103.2 106 60.4
Actinidia34187 Actinidia chinensis HOM05D004948 ORTHO05D005824 2.9e-20 102.1 91 63.7
Rhsim03G0197700 Rhododendron simsii HOM05D004948 ORTHO05D005824 6.4e-20 100.9 95 62.1
CSS0007759 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 3.2e-19 98.6 86 61.6
Dinv35301 Davidia involucrata HOM05D004948 ORTHO05D005824 3.2e-19 98.6 112 56.2
TAR636G2931 Trochodendron aralioides HOM05D004948 ORTHO05D005824 3.2e-19 98.6 103 57.3
COL.COLO4_04803 Corchorus olitorius HOM05D004948 ORTHO05D005824 2.7e-18 95.5 103 51.5
GSVIVG01028728001 Vitis vinifera HOM05D004948 ORTHO05D005824 1.0e-17 93.6 91 54.9
PGR083G1298 Punica granatum HOM05D004948 ORTHO05D005824 1.7e-17 92.8 101 52.5
MSTRG.65 Avicennia marina HOM05D004948 ORTHO05D005824 2.3e-17 92.4 96 57.3
Lj3A912T42 Lonicera japonica HOM05D004948 ORTHO05D005824 8.7e-17 90.5 103 51.5
SGA_v2.0_scaffold10G05268 Striga asiatica HOM05D004948 ORTHO05D005824 1.1e-16 90.1 71 70.4
Cpa.g.sc3.41 Carica papaya HOM05D004948 ORTHO05D005824 1.5e-16 89.7 104 52.9
SalBow2G2244 Salvia bowleyana HOM05D004948 ORTHO05D005824 1.5e-16 89.7 91 58.2
TAR629G2953 Trochodendron aralioides HOM05D004948 ORTHO05D005824 1.5e-16 89.7 103 55.3
Thecc.03G191700 Theobroma cacao HOM05D004948 ORTHO05D005824 5.6e-16 87.8 103 46.6
Solyc03g007480.3 Solanum lycopersicum HOM05D004948 ORTHO05D005824 7.3e-16 87.4 91 59.3
Sopen03g003430 Solanum pennellii HOM05D004948 ORTHO05D005824 7.3e-16 87.4 91 59.3
CAN.G108.18 Capsicum annuum HOM05D004948 ORTHO05D005824 2.1e-15 85.9 66 65.2
Ciclev10005800m.g Citrus clementina HOM05D004948 ORTHO05D005824 3.6e-15 85.1 103 46.6
Sed0002242 Sechium edule HOM05D004948 ORTHO05D005824 3.6e-15 85.1 79 60.8
PGSC0003DMG400009097 Solanum tuberosum HOM05D004948 ORTHO05D005824 3.6e-15 85.1 91 59.3
Duzib068G0205 Durio zibethinus HOM05D004948 ORTHO05D005824 4.7e-15 84.7 103 44.7
Migut.F01058 Erythranthe guttata HOM05D004948 ORTHO05D005824 4.7e-15 84.7 97 51.5
MD07G1283800 Malus domestica HOM05D004948 ORTHO05D005824 4.7e-15 84.7 112 46.4
Nitab4.5_0001331g0180 Nicotiana tabacum HOM05D004948 ORTHO05D005824 4.7e-15 84.7 103 53.4
PGR042G1790 Punica granatum HOM05D004948 ORTHO05D005824 4.7e-15 84.7 65 64.6
ClCG01G000640 Citrullus lanatus HOM05D004948 ORTHO05D005824 6.2e-15 84.3 83 57.8
Gohir.D12G253100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 1.1e-14 83.6 63 65.1
Gorai.008G271400 Gossypium raimondii HOM05D004948 ORTHO05D005824 1.1e-14 83.6 63 65.1
QL09p011186 Quercus lobata HOM05D004948 ORTHO05D005824 1.4e-14 83.2 103 49.5
CiPaw.06G006800 Carya illinoinensis HOM05D004948 ORTHO05D005824 1.8e-14 82.8 106 47.2
Gohir.A12G252400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 1.8e-14 82.8 82 53.7
Atru.chr1.284 Acer truncatum HOM05D004948 ORTHO05D005824 2.4e-14 82.4 107 48.6
CANSAT21G0873 Cannabis sativa HOM05D004948 ORTHO05D005824 2.4e-14 82.4 90 51.1
Manes.06G156200 Manihot esculenta HOM05D004948 ORTHO05D005824 2.4e-14 82.4 91 51.6
PGSC0003DMG400028892 Solanum tuberosum HOM05D004948 ORTHO05D005824 2.4e-14 82.4 108 50.9
CsaV3_5G000730 Cucumis sativus L. HOM05D004948 ORTHO05D005824 3.1e-14 82.0 87 54.0
FAN03G1348 Fragaria x ananassa HOM05D004948 ORTHO05D005824 3.1e-14 82.0 95 49.5
Nitab4.5_0000472g0200 Nicotiana tabacum HOM05D004948 ORTHO05D005824 3.1e-14 82.0 103 53.4
Duzib084G1367 Durio zibethinus HOM05D004948 ORTHO05D005824 4.0e-14 81.6 91 46.2
Haze_00103 Corylus avellana HOM05D004948 ORTHO05D005824 6.9e-14 80.9 91 48.4
MELO3C005865.2 Cucumis melo HOM05D004948 ORTHO05D005824 1.5e-13 79.7 87 52.9
Duzib205G0398 Durio zibethinus HOM05D004948 ORTHO05D005824 2.6e-13 79.0 103 45.6
Nn2g13651 Nelumbo nucifera HOM05D004948 ORTHO05D005824 2.6e-13 79.0 67 64.2
FAN01G0333 Fragaria x ananassa HOM05D004948 ORTHO05D005824 4.4e-13 78.2 103 46.6
MD01G1214200 Malus domestica HOM05D004948 ORTHO05D005824 5.8e-13 77.8 110 45.5
Cfa016354 Carpinus fangiana HOM05D004948 ORTHO05D005824 7.6e-13 77.4 91 47.3
FAN06G2108 Fragaria x ananassa HOM05D004948 ORTHO05D005824 7.6e-13 77.4 103 46.6
FAN10G0476 Fragaria x ananassa HOM05D004948 ORTHO05D005824 7.6e-13 77.4 103 46.6
Solyc06g051820.4 Solanum lycopersicum HOM05D004948 ORTHO05D005824 7.6e-13 77.4 105 50.5
FAN06G4897 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.7e-12 76.3 107 43.9
arahy.Tifrunner.gnm1.ann1.LZU7FF Arachis hypogaea HOM05D004948 ORTHO05D005824 2.2e-12 75.9 69 55.1
arahy.Tifrunner.gnm1.ann1.MD6354 Arachis hypogaea HOM05D004948 ORTHO05D005824 2.2e-12 75.9 69 55.1
FvH4_7g30910 Fragaria vesca HOM05D004948 ORTHO05D005824 2.2e-12 75.9 91 47.3
FAN10G0469 Fragaria x ananassa HOM05D004948 ORTHO05D005824 2.2e-12 75.9 103 45.6
Sopen06g017830 Solanum pennellii HOM05D004948 ORTHO05D005824 8.4e-12 73.9 102 50.0
EL10Ac3g05356 Beta vulgaris HOM05D004948 ORTHO05D005824 1.1e-11 73.6 57 61.4
Lj1g0018821 Lotus japonicus HOM05D004948 ORTHO05D005824 1.4e-11 73.2 91 41.8
Potri.015G023400 Populus trichocarpa HOM05D004948 ORTHO05D005824 1.4e-11 73.2 103 48.5
Glyma.13G040600 Glycine max HOM05D004948 ORTHO05D005824 1.9e-11 72.8 84 44.0
Aqoxy5G04108 Aquilegia oxysepala HOM05D004948 ORTHO05D005824 2.4e-11 72.4 90 50.0
Manes.14G019200 Manihot esculenta HOM05D004948 ORTHO05D005824 2.4e-11 72.4 60 51.7
Prupe.2G306200 Prunus persica HOM05D004948 ORTHO05D005824 2.4e-11 72.4 84 52.4
AUR62031482 Chenopodium quinoa HOM05D004948 ORTHO05D005824 4.2e-11 71.6 49 67.3
Potri.012G033100 Populus trichocarpa HOM05D004948 ORTHO05D005824 4.2e-11 71.6 105 42.9
THA.LOC104800283 Tarenaya hassleriana HOM05D004948 ORTHO05D005824 5.4e-11 71.2 53 67.9
Lsat_1_v5_gn_8_6120 Lactuca sativa HOM05D004948 ORTHO05D005824 7.1e-11 70.9 71 56.3
Peaxi162Scf00904g00460 Petunia axillaris HOM05D004948 ORTHO05D005824 7.1e-11 70.9 59 62.7
Eucgr.A02670 Eucalyptus grandis HOM05D004948 ORTHO05D005824 9.3e-11 70.5 108 42.6
Sabra12G0022300 Salix brachista HOM05D004948 ORTHO05D005824 1.2e-10 70.1 105 42.9
Sc19g0001090 Simmondsia chinensis HOM05D004948 ORTHO05D005824 1.6e-10 69.7 85 45.9
AUR62021051 Chenopodium quinoa HOM05D004948 ORTHO05D005824 3.5e-10 68.6 49 65.3
DCAR_010636 Daucus carota HOM05D004948 ORTHO05D005824 4.6e-10 68.2 108 44.4
ATR1132G055 Amborella trichopoda HOM05D004948 ORTHO05D005824 1.0e-09 67.0 42 69.0
ECA233G3864 Erigeron canadensis HOM05D004948 ORTHO05D005824 1.3e-09 66.6 56 58.9
Aa31sc29G60 Aethionema arabicum HOM05D004948 ORTHO05D005824 8.7e-09 63.9 47 63.8
HanXRQChr13g0392981 Helianthus annuus HOM05D004948 ORTHO05D005824 1.5e-08 63.2 71 49.3
MBI07_g20438_MAGBIO Magnolia biondii HOM05D004948 ORTHO05D005824 1.9e-08 62.8 59 52.5
Hund27721 Selenicereus undatus HOM05D004948 ORTHO05D005824 4.3e-08 61.6 57 56.1
Hund27734 Selenicereus undatus HOM05D004948 ORTHO05D005824 4.3e-08 61.6 57 56.1
Aa31LG5G23580 Aethionema arabicum HOM05D004948 ORTHO05D005824 7.3e-08 60.8 47 61.7
Sp6g15460 Schrenkiella parvula HOM05D004948 ORTHO05D005824 7.3e-08 60.8 91 41.8
Carub.0008s1349 Capsella rubella HOM05D004948 ORTHO05D005824 9.6e-08 60.5 59 52.5
Thhalv10014692m.g Eutrema salsugineum HOM05D004948 ORTHO05D005824 1.3e-07 60.1 59 55.9
TWI23G0483 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 6.2e-07 57.8 56 57.1
Peaxi162Scf00618g00525 Petunia axillaris HOM05D004948 ORTHO05D005824 8.1e-07 57.4 102 40.2
BcaB05g22031 Brassica carinata HOM05D004948 ORTHO05D005824 1.1e-06 57.0 50 56.0
AT5G53310 Arabidopsis thaliana HOM05D004948 ORTHO05D005824 1.4e-06 56.6 58 50.0
Lalb_Chr04g0263671 Lupinus albus HOM05D004948 ORTHO05D005824 1.8e-06 56.2 72 41.7
RcHm_v2.0_Chr1g0379991 Rosa chinensis HOM05D004948 ORTHO05D005824 1.8e-06 56.2 47 63.8
A02p11140 Brassica napus HOM05D004948 ORTHO05D005824 4.0e-06 55.1 37 62.2
BraA02t06177Z Brassica rapa HOM05D004948 ORTHO05D005824 4.0e-06 55.1 37 62.2
Pp3c8_900 Physcomitrium patens HOM05D004948 ORTHO05D005824 4.0e-06 55.1 41 53.7
CARHR266350 Cardamine hirsuta HOM05D004948 ORTHO05D005824 6.9e-06 54.3 47 53.2
Aa31LG3G9220 Aethionema arabicum HOM05D004948 ORTHO05D005824 9.0e-06 53.9 91 36.3
AL8G28010 Arabidopsis lyrata HOM05D004948 ORTHO05D005824 9.0e-06 53.9 91 39.6


User provided reference genes

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