Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022156 Camellia sinensis var. sinensis HOM05D007763 ORTHO05D009537 1.4e-146 524.2 662 100.0
Actinidia04871 Actinidia chinensis HOM05D007763 ORTHO05D009537 2.0e-63 248.1 201 66.2
Hma1.2p1_0060F.1_g033520 Hydrangea macrophylla HOM05D007763 ORTHO05D009537 1.2e-57 228.8 201 61.7
Rhsim08G0152400 Rhododendron simsii HOM05D000001 ORTHO05D010304 9.7e-55 219.2 205 60.5
Dinv38739 Davidia involucrata HOM05D007763 ORTHO05D001128 3.7e-54 217.2 208 58.7
Lj9C466T13 Lonicera japonica HOM05D007763 ORTHO05D009537 2.9e-51 207.6 201 56.7
GSVIVG01007974001 Vitis vinifera HOM05D007763 ORTHO05D010304 1.5e-50 205.3 200 59.0
Sc12g0006490 Simmondsia chinensis HOM05D007763 ORTHO05D009537 2.2e-46 191.4 204 52.5
Thecc.03G093400 Theobroma cacao HOM05D007763 ORTHO05D009537 4.8e-46 190.3 654 75.7
TAR622G0770 Trochodendron aralioides HOM05D007763 ORTHO05D009537 1.8e-45 188.3 201 52.7
Ciclev10024595m.g Citrus clementina HOM05D007763 ORTHO05D009537 9.1e-45 186.0 216 50.5
Cc04_g15160 Coffea canephora HOM05D007763 ORTHO05D009537 3.5e-44 184.1 201 50.7
Duzib205G0970 Durio zibethinus HOM05D007763 ORTHO05D009537 2.2e-43 181.4 202 52.5
Haze_07298 Corylus avellana HOM05D007763 ORTHO05D010304 1.9e-42 178.3 207 50.2
COL.COLO4_36930 Corchorus olitorius HOM05D007763 ORTHO05D009537 2.5e-42 177.9 201 51.7
Nn2g12476 Nelumbo nucifera HOM05D007763 ORTHO05D009537 5.5e-42 176.8 199 50.3
Gohir.D03G094100 Gossypium hirsutum HOM05D007763 ORTHO05D009537 4.7e-41 173.7 201 49.8
Gorai.003G098200 Gossypium raimondii HOM05D007763 ORTHO05D009537 4.7e-41 173.7 202 50.0
Gohir.A03G067600 Gossypium hirsutum HOM05D007763 ORTHO05D009537 1.0e-40 172.6 201 50.2
QL10p017571 Quercus lobata HOM05D007763 ORTHO05D009537 1.4e-40 172.2 159 55.3
Prupe.5G197300 Prunus persica HOM05D007763 ORTHO05D009537 2.3e-40 171.4 162 56.8
Atru.chr12.1670 Acer truncatum HOM05D007763 ORTHO05D009537 2.0e-39 168.3 162 54.9
Cfa018915 Carpinus fangiana HOM05D007763 ORTHO05D009537 3.4e-39 167.5 208 48.6
Migut.I00207 Erythranthe guttata HOM05D007763 ORTHO05D009537 2.8e-38 164.5 179 49.2
AUR62021645 Chenopodium quinoa HOM05D007763 ORTHO05D009537 4.8e-38 163.7 169 49.7
PGR031G2821 Punica granatum HOM05D007763 ORTHO05D009537 8.3e-38 162.9 203 47.3
SGA_v2.0_scaffold25G10931 Striga asiatica HOM05D007763 ORTHO05D009537 3.1e-37 161.0 200 47.5
HanXRQChr08g0236691 Helianthus annuus HOM05D007763 ORTHO05D009537 1.2e-36 159.1 184 47.3
PSO017G0499 Papaver somniferum HOM05D007763 ORTHO05D009537 2.7e-36 157.9 200 46.5
Lsat_1_v5_gn_5_21540 Lactuca sativa HOM05D007763 ORTHO05D009537 3.5e-36 157.5 181 46.4
RcHm_v2.0_Chr7g0181881 Rosa chinensis HOM05D007763 ORTHO05D009537 3.5e-36 157.5 192 51.0
ClCG09G020450 Citrullus lanatus HOM05D007763 ORTHO05D009537 2.2e-35 154.8 170 48.8
MSTRG.11374 Avicennia marina HOM05D007763 ORTHO05D009537 3.8e-35 154.1 202 43.6
Aqoxy3G00480 Aquilegia oxysepala HOM05D007763 ORTHO05D009537 1.1e-34 152.5 197 45.2
TWI60G1313 Tripterygium wilfordii HOM05D007763 ORTHO05D009537 1.9e-34 151.8 189 45.5
Sed0000161 Sechium edule HOM05D007763 ORTHO05D009537 4.2e-34 150.6 170 48.2
Ah.02g113700 Amaranthus hybridus HOM05D007763 ORTHO05D009537 4.7e-33 147.1 202 42.1
FvH4_5g14610 Fragaria vesca HOM05D007763 ORTHO05D009537 3.0e-32 144.4 150 52.0
Manes.14G081200 Manihot esculenta HOM05D007763 ORTHO05D009537 3.0e-32 144.4 160 52.5
FAN18G1924 Fragaria x ananassa HOM05D007763 ORTHO05D009537 4.0e-32 144.1 157 51.0
FAN13G0255 Fragaria x ananassa HOM05D007763 ORTHO05D009537 8.8e-32 142.9 157 50.3
MELO3C025502.2 Cucumis melo HOM05D007763 ORTHO05D009537 5.7e-31 140.2 189 43.4
CsaV3_5G025970 Cucumis sativus L. HOM05D007763 ORTHO05D009537 1.8e-29 135.2 188 41.5
CDE04G3021 Ceratophyllum demersum HOM05D007763 ORTHO05D000003 2.0e-28 131.7 205 38.5
DCAR_002300 Daucus carota HOM05D007763 ORTHO05D009537 1.3e-27 129.0 105 60.0
TPR.G27557 Trifolium pratense HOM05D007763 ORTHO05D009537 1.3e-27 129.0 120 53.3
AUR62008445 Chenopodium quinoa HOM05D007763 ORTHO05D009537 2.3e-27 128.3 169 42.6
BcaNung06902 Brassica carinata HOM05D007763 ORTHO05D009537 6.6e-27 126.7 183 44.3
Lalb_Chr08g0235511 Lupinus albus HOM05D007763 ORTHO05D009537 3.6e-25 120.9 116 52.6
EL10Ac5g11053 Beta vulgaris HOM05D014602 ORTHO05D009537 4.7e-25 120.6 102 55.9
BraA09t36381Z Brassica rapa HOM05D007763 ORTHO05D009537 4.7e-25 120.6 208 40.9
Oeu052450.2 Olea europaea HOM05D007763 ORTHO05D009537 4.7e-25 120.6 109 54.1
C09p08190 Brassica napus HOM05D007763 ORTHO05D009537 6.1e-25 120.2 207 41.5
BolC9t53731H Brassica oleracea HOM05D007763 ORTHO05D009537 6.1e-25 120.2 207 41.5
BcaC04g23450 Brassica carinata HOM05D007763 ORTHO05D009537 8.0e-25 119.8 207 41.5
Atru.chr12.1664 Acer truncatum HOM05D007763 ORTHO05D009537 1.0e-24 119.4 109 56.0
Thhalv10005336m.g Eutrema salsugineum HOM05D007763 ORTHO05D009537 2.3e-24 118.2 211 40.3
AT5G61400 Arabidopsis thaliana HOM05D007763 ORTHO05D009537 8.9e-24 116.3 204 37.7
THA.LOC104801471 Tarenaya hassleriana HOM05D007763 ORTHO05D009537 2.0e-23 115.2 207 36.2
Aa31LG11G2020 Aethionema arabicum HOM05D007763 ORTHO05D009537 5.7e-23 113.6 163 37.4
Carub.0008s2207 Capsella rubella HOM05D007763 ORTHO05D009537 6.4e-22 110.2 211 37.4
CARHR275160 Cardamine hirsuta HOM05D007763 ORTHO05D009537 8.3e-22 109.8 210 38.6
AL8G38070 Arabidopsis lyrata HOM05D007763 ORTHO05D009537 1.8e-21 108.6 187 37.4
Aqoxy2G01348 Aquilegia oxysepala HOM05D007763 ORTHO05D009537 2.4e-21 108.2 105 50.5
vmacro17568 Vaccinium macrocarpon HOM05D007763 ORTHO05D009537 5.4e-21 107.1 104 53.8
Solyc06g069700.4 Solanum lycopersicum HOM05D007763 ORTHO05D009537 7.0e-21 106.7 152 43.4
Sopen06g027000 Solanum pennellii HOM05D007763 ORTHO05D009537 1.2e-20 105.9 152 44.1
LjContig00102g0005353 Lotus japonicus HOM05D000001 ORTHO05D010304 1.6e-20 105.5 100 51.0
Atru.chr12.1659 Acer truncatum HOM05D007763 ORTHO05D009537 5.9e-20 103.6 120 46.7
ECA246G2275 Erigeron canadensis HOM05D007763 ORTHO05D009537 1.1e-18 99.4 72 65.3
Phvul.009G185566 Phaseolus vulgaris HOM05D007763 ORTHO05D009537 2.5e-18 98.2 125 44.0
arahy.Tifrunner.gnm1.ann1.NWYI6Z Arachis hypogaea HOM05D000001 ORTHO05D010304 3.3e-18 97.8 93 50.5
Peaxi162Scf00013g00410 Petunia axillaris HOM05D007763 ORTHO05D009537 4.3e-18 97.4 95 54.7
arahy.Tifrunner.gnm1.ann1.PFL66H Arachis hypogaea HOM05D007763 ORTHO05D009537 1.2e-17 95.9 103 45.6
TPR.G11825 Trifolium pratense HOM05D007763 ORTHO05D009537 4.7e-17 94.0 142 42.3
Ca_14664_v3 Cicer arietinum L. HOM05D007763 ORTHO05D009537 1.8e-16 92.0 127 37.8
CAN.G587.9 Capsicum annuum HOM05D007763 ORTHO05D009537 8.9e-16 89.7 142 43.0
ATR1127G168 Amborella trichopoda HOM05D007763 ORTHO05D009537 2.6e-15 88.2 214 34.1
MBI02_g14230_MAGBIO Magnolia biondii HOM05D007763 ORTHO05D011706 4.4e-15 87.4 132 38.6
Psat5g201000 Pisum sativum HOM05D007763 ORTHO05D009537 5.8e-15 87.0 75 48.0
Hund02629 Selenicereus undatus HOM05D007763 ORTHO05D019789 2.9e-14 84.7 59 59.3
BcaC04g23452 Brassica carinata HOM05D007763 ORTHO05D009537 1.1e-13 82.8 113 42.5
Nitab4.5_0004286g0010 Nicotiana tabacum HOM05D007763 ORTHO05D009537 4.1e-13 80.9 50 62.0
Os09g0417500 Oryza sativa ssp. japonica HOM05D007763 ORTHO05D009537 7.8e-12 76.6 67 49.3
Nitab4.5_0003021g0070 Nicotiana tabacum HOM05D007763 ORTHO05D009537 1.3e-11 75.9 77 46.8
Medtr3g037490 Medicago truncatula HOM05D007763 ORTHO05D009537 3.0e-11 74.7 63 50.8
Zm00001eb312410 Zea mays HOM05D007763 ORTHO05D009537 3.9e-11 74.3 135 33.3
SEGI_21536 Sequoiadendron giganteum HOM05D007639 ORTHO05D009509 8.6e-11 73.2 154 29.9
SEGI_07640 Sequoiadendron giganteum HOM05D007763 ORTHO05D009537 3.3e-10 71.2 165 33.3
ClCG09G019220 Citrullus lanatus HOM05D007358 ORTHO05D009117 1.2e-09 69.3 165 29.7
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 2.1e-09 68.6 154 29.2
FAN08G0725 Fragaria x ananassa HOM05D007291 ORTHO05D009038 4.7e-09 67.4 161 32.9
FvH4_5g33100 Fragaria vesca HOM05D007291 ORTHO05D009038 6.2e-09 67.0 161 32.9
BcaB03g12921 Brassica carinata HOM05D007639 ORTHO05D009509 1.1e-08 66.2 169 30.2
COL.COLO4_29095 Corchorus olitorius HOM05D007358 ORTHO05D009117 1.8e-08 65.5 172 30.2
THA.LOC104805375 Tarenaya hassleriana HOM05D007358 ORTHO05D009117 1.8e-08 65.5 153 28.1
ClCG01G007050 Citrullus lanatus HOM05D007496 ORTHO05D009479 4.0e-08 64.3 155 29.7
AL5G11430 Arabidopsis lyrata HOM05D007496 ORTHO05D009479 6.8e-08 63.5 156 28.8
MELO3C033967.2 Cucumis melo HOM05D007496 ORTHO05D009479 8.9e-08 63.2 152 29.6
RcHm_v2.0_Chr7g0231291 Rosa chinensis HOM05D007291 ORTHO05D009038 8.9e-08 63.2 158 30.4
CsaV3_5G017450 Cucumis sativus L. HOM05D007496 ORTHO05D009479 1.2e-07 62.8 151 29.8
Cpa.g.sc116.47 Carica papaya HOM05D007291 ORTHO05D009038 1.5e-07 62.4 168 28.0
BolC4t26320H Brassica oleracea HOM05D007358 ORTHO05D009117 2.0e-07 62.0 152 29.6
CsaV3_5G027190 Cucumis sativus L. HOM05D007358 ORTHO05D009117 2.0e-07 62.0 165 27.9
TAR636G1662 Trochodendron aralioides HOM05D007496 ORTHO05D009479 2.0e-07 62.0 139 32.4
Aa31LG2G3020 Aethionema arabicum HOM05D007291 ORTHO05D009038 2.6e-07 61.6 170 29.4
Carub.0005s0122 Capsella rubella HOM05D007496 ORTHO05D009479 2.6e-07 61.6 157 28.7
SEGI_29272 Sequoiadendron giganteum HOM05D007291 ORTHO05D009038 2.6e-07 61.6 152 27.6
BraA04t17002Z Brassica rapa HOM05D007358 ORTHO05D009117 3.4e-07 61.2 153 30.1
AL8G38750 Arabidopsis lyrata HOM05D005764 ORTHO05D006600 4.4e-07 60.8 75 40.0
A04p13440 Brassica napus HOM05D007358 ORTHO05D009117 4.4e-07 60.8 153 30.1
HanXRQChr17g0557061 Helianthus annuus HOM05D007639 ORTHO05D009509 4.4e-07 60.8 167 26.9
RcHm_v2.0_Chr7g0231271 Rosa chinensis HOM05D007291 ORTHO05D009038 4.4e-07 60.8 158 29.7
AT2G02150 Arabidopsis thaliana HOM05D007496 ORTHO05D009479 5.8e-07 60.5 156 27.6
Thhalv10003592m.g Eutrema salsugineum HOM05D005764 ORTHO05D006600 5.8e-07 60.5 73 43.8
Peaxi162Scf00057g00149 Petunia axillaris HOM05D000909 ORTHO05D009509 7.5e-07 60.1 143 32.9
Haze_11634 Corylus avellana HOM05D007291 ORTHO05D009038 9.8e-07 59.7 148 27.7
TPR.G14066 Trifolium pratense HOM05D007358 ORTHO05D009117 9.8e-07 59.7 167 27.5
Thhalv10018418m.g Eutrema salsugineum HOM05D007291 ORTHO05D009038 1.3e-06 59.3 167 26.3
ATR1127G166 Amborella trichopoda HOM05D007358 ORTHO05D009117 1.7e-06 58.9 150 24.7
MSTRG.1303 Avicennia marina HOM05D007639 ORTHO05D009509 1.7e-06 58.9 153 26.8
C04p47210 Brassica napus HOM05D007358 ORTHO05D009117 2.2e-06 58.5 152 28.9
Duzib093G1018 Durio zibethinus HOM05D007639 ORTHO05D009509 2.2e-06 58.5 128 31.2
Gorai.009G205400 Gossypium raimondii HOM05D007639 ORTHO05D009509 2.2e-06 58.5 139 28.8
TAR624G0355 Trochodendron aralioides HOM05D002890 ORTHO05D009847 2.2e-06 58.5 173 27.2
BraA06t27256Z Brassica rapa HOM05D007496 ORTHO05D009479 2.9e-06 58.2 156 27.6
CANSAT64G0946 Cannabis sativa HOM05D007291 ORTHO05D009038 2.9e-06 58.2 148 29.1
Gohir.D05G200100 Gossypium hirsutum HOM05D007639 ORTHO05D009509 2.9e-06 58.2 139 28.8
Potri.010G098400 Populus trichocarpa HOM05D007496 ORTHO05D009479 2.9e-06 58.2 153 30.7
PGR142G1723 Punica granatum HOM05D007358 ORTHO05D009117 2.9e-06 58.2 155 27.7
Prupe.4G237400 Prunus persica HOM05D007291 ORTHO05D009038 3.7e-06 57.8 148 29.7
Atru.BG.247.p Acer truncatum HOM05D007639 ORTHO05D009509 4.9e-06 57.4 154 27.3
A06p43780 Brassica napus HOM05D007496 ORTHO05D009479 4.9e-06 57.4 155 27.1
CiPaw.05G161700 Carya illinoinensis HOM05D007496 ORTHO05D009479 4.9e-06 57.4 153 32.0
FvH4_2g40380 Fragaria vesca HOM05D007639 ORTHO05D009509 4.9e-06 57.4 145 31.0
QL03p041883 Quercus lobata HOM05D007496 ORTHO05D009479 4.9e-06 57.4 148 29.1
VMungo0251G1188 Vigna mungo HOM05D007496 ORTHO05D009479 4.9e-06 57.4 151 28.5
Ciclev10030410m.g Citrus clementina HOM05D000001 ORTHO05D000003 6.4e-06 57.0 97 30.9
Sp5g21370 Schrenkiella parvula HOM05D007291 ORTHO05D009038 6.4e-06 57.0 171 26.3
Hma1.2p1_0524F.1_g172380 Hydrangea macrophylla HOM05D007291 ORTHO05D009038 8.3e-06 56.6 148 25.0
Sed0015079 Sechium edule HOM05D007358 ORTHO05D009117 8.3e-06 56.6 165 26.7
vmacro17185 Vaccinium macrocarpon HOM05D007496 ORTHO05D009479 8.3e-06 56.6 154 27.9


User provided reference genes

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