Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022151 Camellia sinensis var. sinensis HOM05D004060 ORTHO05D004967 1.2e-110 403.7 282 100.0
Dinv02133 Davidia involucrata HOM05D004060 ORTHO05D004967 4.1e-63 245.7 279 77.8
Hma1.2p1_0696F.1_g204640 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 2.8e-59 233.0 282 71.6
Cfa016842 Carpinus fangiana HOM05D004060 ORTHO05D004967 4.4e-57 225.7 280 70.0
Haze_19892 Corylus avellana HOM05D004060 ORTHO05D004967 1.1e-55 221.1 283 71.0
Haze_19884 Corylus avellana HOM05D004060 ORTHO05D004967 1.4e-55 220.7 283 71.0
Actinidia09345 Actinidia chinensis HOM05D004060 ORTHO05D004967 1.6e-54 217.2 284 73.6
Cc06_g16910 Coffea canephora HOM05D004060 ORTHO05D004967 3.5e-54 216.1 280 72.1
Rhsim03G0018200 Rhododendron simsii HOM05D004060 ORTHO05D004967 2.3e-53 213.4 285 70.2
vmacro22363 Vaccinium macrocarpon HOM05D004060 ORTHO05D004967 2.3e-53 213.4 275 70.9
Dinv18064 Davidia involucrata HOM05D004060 ORTHO05D004967 5.1e-53 212.2 196 68.4
Lju124C36T16 Lonicera japonica HOM05D004060 ORTHO05D004967 7.3e-52 208.4 201 64.7
Ciclev10005594m.g Citrus clementina HOM05D004060 ORTHO05D004967 9.5e-52 208.0 284 72.5
Prupe.7G064800 Prunus persica HOM05D004060 ORTHO05D004967 1.2e-51 207.6 298 68.8
Dinv02134 Davidia involucrata HOM05D004060 ORTHO05D004967 2.1e-51 206.8 274 71.5
TAR057G0003 Trochodendron aralioides HOM05D004060 ORTHO05D004967 8.1e-51 204.9 280 70.0
QL07p021067 Quercus lobata HOM05D004060 ORTHO05D004967 1.1e-50 204.5 282 69.9
Potri.016G054400 Populus trichocarpa HOM05D004060 ORTHO05D004967 1.4e-50 204.1 286 69.2
Nn2g15346 Nelumbo nucifera HOM05D004060 ORTHO05D004967 1.8e-50 203.8 178 67.4
Actinidia24529 Actinidia chinensis HOM05D004060 ORTHO05D004967 3.1e-50 203.0 201 63.2
COL.COLO4_28207 Corchorus olitorius HOM05D004060 ORTHO05D004967 1.2e-49 201.1 269 71.7
Thecc.05G159200 Theobroma cacao HOM05D004060 ORTHO05D004967 5.8e-49 198.7 275 70.2
MBI02_g05658_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 1.3e-48 197.6 286 59.1
RcHm_v2.0_Chr3g0481501 Rosa chinensis HOM05D004060 ORTHO05D004967 2.2e-48 196.8 300 64.3
Oeu033785.1 Olea europaea HOM05D004060 ORTHO05D004967 4.9e-48 195.7 258 70.2
TAR369G1158 Trochodendron aralioides HOM05D004060 ORTHO05D004967 4.9e-48 195.7 282 67.7
FAN09G1680 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.2e-46 191.0 299 64.9
Potri.006G053200 Populus trichocarpa HOM05D004060 ORTHO05D004967 1.6e-46 190.7 284 66.5
Duzib128G1686 Durio zibethinus HOM05D004060 ORTHO05D004967 2.1e-46 190.3 256 66.4
FvH4_6g23510 Fragaria vesca HOM05D004060 ORTHO05D004967 3.5e-46 189.5 297 66.0
FAN02G3665 Fragaria x ananassa HOM05D004060 ORTHO05D004967 3.5e-46 189.5 299 64.9
FAN14G3078 Fragaria x ananassa HOM05D004060 ORTHO05D004967 3.5e-46 189.5 297 66.0
FAN05G0004 Fragaria x ananassa HOM05D004060 ORTHO05D004967 4.6e-46 189.1 299 64.9
Sabra06G0037600 Salix brachista HOM05D004060 ORTHO05D004967 6.0e-46 188.7 279 68.5
CiPaw.10G032000 Carya illinoinensis HOM05D004060 ORTHO05D004967 1.0e-45 188.0 299 69.6
PGR004G1680 Punica granatum HOM05D004060 ORTHO05D004967 1.5e-44 184.1 285 64.6
Gohir.A11G312000 Gossypium hirsutum HOM05D004060 ORTHO05D004967 7.3e-44 181.8 283 66.8
CAN.G128.15 Capsicum annuum HOM05D004060 ORTHO05D004967 1.2e-43 181.0 259 71.4
Oeu064312.1 Olea europaea HOM05D004060 ORTHO05D004967 1.2e-43 181.0 287 56.1
TWI74G0684 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 1.6e-43 180.6 270 70.0
Duzib093G0278 Durio zibethinus HOM05D004060 ORTHO05D004967 2.8e-43 179.9 191 60.7
Nitab4.5_0002841g0040 Nicotiana tabacum HOM05D004060 ORTHO05D004967 2.8e-43 179.9 282 66.3
Nitab4.5_0000733g0190 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.4e-42 177.6 264 70.1
Gohir.A11G312100 Gossypium hirsutum HOM05D004060 ORTHO05D004967 1.8e-42 177.2 266 68.0
Gohir.D11G328600 Gossypium hirsutum HOM05D004060 ORTHO05D004967 1.8e-42 177.2 266 68.0
Gorai.007G359900 Gossypium raimondii HOM05D004060 ORTHO05D004967 1.8e-42 177.2 266 68.0
Duzib106G1229 Durio zibethinus HOM05D004060 ORTHO05D004967 2.4e-42 176.8 265 69.8
Nitab4.5_0001509g0060 Nicotiana tabacum HOM05D004060 ORTHO05D004967 2.4e-42 176.8 275 68.7
MSTRG.6438 Avicennia marina HOM05D004060 ORTHO05D004967 3.1e-42 176.4 295 63.7
MD14G1069500 Malus domestica HOM05D004060 ORTHO05D004967 5.2e-42 175.6 307 63.5
TWI53G1485 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 5.2e-42 175.6 277 67.9
Nitab4.5_0001663g0020 Nicotiana tabacum HOM05D004060 ORTHO05D004967 2.6e-41 173.3 265 69.4
Cpa.g.sc92.28 Carica papaya HOM05D004060 ORTHO05D004967 4.4e-41 172.6 271 52.4
DCAR_013590 Daucus carota HOM05D004060 ORTHO05D004967 4.4e-41 172.6 291 67.4
Manes.09G024700 Manihot esculenta HOM05D004060 ORTHO05D004967 4.4e-41 172.6 272 68.4
Lsat_1_v5_gn_5_162320 Lactuca sativa HOM05D004060 ORTHO05D004967 9.9e-41 171.4 267 69.3
ClCG10G016620 Citrullus lanatus HOM05D004060 ORTHO05D004967 1.3e-40 171.0 264 68.6
Hma1.2p1_0247F.1_g101840 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 1.7e-40 170.6 278 66.5
VMungo1383G2713 Vigna mungo HOM05D004060 ORTHO05D004967 2.2e-40 170.2 286 62.9
Manes.08G049300 Manihot esculenta HOM05D004060 ORTHO05D004967 2.9e-40 169.9 292 63.0
Phvul.001G135500 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 2.9e-40 169.9 203 53.7
Migut.J01771 Erythranthe guttata HOM05D004060 ORTHO05D004967 6.4e-40 168.7 260 69.6
PGSC0003DMG400023721 Solanum tuberosum HOM05D004060 ORTHO05D004967 7.1e-39 165.2 278 65.8
Aqoxy1G00285 Aquilegia oxysepala HOM05D004060 ORTHO05D004967 2.1e-38 163.7 292 60.6
ECA248G2911 Erigeron canadensis HOM05D004060 ORTHO05D004967 2.1e-38 163.7 274 65.0
TAR633G1984 Trochodendron aralioides HOM05D004060 ORTHO05D004967 4.6e-38 162.5 262 63.7
Peaxi162Scf01287g00012 Petunia axillaris HOM05D004060 ORTHO05D004967 7.8e-38 161.8 239 68.6
FAN05G5649 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.3e-37 161.0 293 61.4
Medtr7g091990 Medicago truncatula HOM05D004060 ORTHO05D004967 1.3e-37 161.0 295 63.7
MSTRG.19874 Avicennia marina HOM05D004060 ORTHO05D004967 1.7e-37 160.6 287 59.6
Nn7g36226 Nelumbo nucifera HOM05D004060 ORTHO05D004967 1.7e-37 160.6 190 54.7
SalBow6G3128 Salvia bowleyana HOM05D004060 ORTHO05D004967 1.7e-37 160.6 284 64.1
MELO3C009714.2 Cucumis melo HOM05D004060 ORTHO05D004967 3.0e-37 159.8 286 63.3
Phvul.007G253600 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 3.0e-37 159.8 292 61.0
CsaV3_3G039720 Cucumis sativus L. HOM05D004060 ORTHO05D004967 3.9e-37 159.5 263 65.4
TPR.G21399 Trifolium pratense HOM05D004060 ORTHO05D004967 8.7e-37 158.3 294 61.9
Sopen10g030840 Solanum pennellii HOM05D004060 ORTHO05D004967 1.5e-36 157.5 264 67.0
Atru.chr1.1058 Acer truncatum HOM05D004060 ORTHO05D004967 3.3e-36 156.4 208 54.3
Eucgr.A02379 Eucalyptus grandis HOM05D004060 ORTHO05D004967 5.6e-36 155.6 257 65.4
arahy.Tifrunner.gnm1.ann1.L89JBM Arachis hypogaea HOM05D004060 ORTHO05D004967 7.3e-36 155.2 286 65.4
Medtr1g052560 Medicago truncatula HOM05D004060 ORTHO05D004967 1.3e-35 154.5 295 59.0
CANSAT80G2886 Cannabis sativa HOM05D004060 ORTHO05D004967 2.1e-35 153.7 275 65.1
TWI77G1037 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 2.1e-35 153.7 270 66.3
Sed0004660 Sechium edule HOM05D004060 ORTHO05D004967 4.8e-35 152.5 268 65.3
Glyma.19G141100 Glycine max HOM05D004060 ORTHO05D004967 2.4e-34 150.2 291 60.8
Lalb_Chr20g0110781 Lupinus albus HOM05D004060 ORTHO05D004967 4.0e-34 149.4 305 60.3
CiPaw.09G036400 Carya illinoinensis HOM05D004060 ORTHO05D004967 6.9e-34 148.7 223 74.9
arahy.Tifrunner.gnm1.ann1.AM9K84 Arachis hypogaea HOM05D004060 ORTHO05D004967 9.0e-34 148.3 290 61.0
Solyc04g015520.3 Solanum lycopersicum HOM05D004060 ORTHO05D004967 2.6e-33 146.7 317 56.2
HanXRQChr01g0008631 Helianthus annuus HOM05D004060 ORTHO05D004967 7.6e-33 145.2 277 64.3
HanXRQChr10g0300071 Helianthus annuus HOM05D004060 ORTHO05D004967 1.3e-32 144.4 274 64.2
PSO339G1536 Papaver somniferum HOM05D004060 ORTHO05D004967 4.9e-32 142.5 295 55.9
EL10Ac3g07036 Beta vulgaris HOM05D004060 ORTHO05D004967 1.1e-31 141.4 299 56.5
Ca_08471_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 1.1e-31 141.4 188 52.7
Thhalv10017761m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 1.1e-31 141.4 261 63.2
Lalb_Chr25g0287361 Lupinus albus HOM05D004060 ORTHO05D004967 2.4e-31 140.2 273 59.0
HPP92_019624 Vanilla planifolia HOM05D004060 ORTHO05D004967 2.4e-31 140.2 173 53.2
Psat3g079320 Pisum sativum HOM05D004060 ORTHO05D004967 3.2e-31 139.8 291 58.4
Sc13g0001870 Simmondsia chinensis HOM05D004060 ORTHO05D004967 3.2e-31 139.8 271 61.6
TPR.G3730 Trifolium pratense HOM05D004060 ORTHO05D004967 4.2e-31 139.4 291 59.8
Ca_26888_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 9.3e-31 138.3 307 58.3
Oeu017953.1 Olea europaea HOM05D004060 ORTHO05D004967 2.1e-30 137.1 284 48.6
CARHR167760 Cardamine hirsuta HOM05D004060 ORTHO05D004967 2.7e-30 136.7 302 58.9
BcaNung07195 Brassica carinata HOM05D004060 ORTHO05D004967 3.5e-30 136.3 257 59.1
VMungo0720G0143 Vigna mungo HOM05D004060 ORTHO05D004967 3.5e-30 136.3 293 59.4
MD12G1072300 Malus domestica HOM05D004060 ORTHO05D004967 6.0e-30 135.6 309 58.6
PSO384G1698 Papaver somniferum HOM05D004060 ORTHO05D004967 3.0e-29 133.3 212 46.2
PGSC0003DMG400027238 Solanum tuberosum HOM05D004060 ORTHO05D004967 1.5e-28 131.0 326 53.1
Glyma.03G138100 Glycine max HOM05D004060 ORTHO05D004967 3.3e-28 129.8 211 47.4
arahy.Tifrunner.gnm1.ann1.GL61MB Arachis hypogaea HOM05D004060 ORTHO05D004967 5.6e-28 129.0 255 63.1
Os07g0569100 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 5.6e-28 129.0 271 60.1
Aa31LG10G12370 Aethionema arabicum HOM05D004060 ORTHO05D004967 9.6e-28 128.3 288 58.3
Lj1g0010539 Lotus japonicus HOM05D004060 ORTHO05D004967 1.3e-27 127.9 284 57.4
Lsat_1_v5_gn_9_27220 Lactuca sativa HOM05D004060 ORTHO05D004967 1.6e-27 127.5 189 50.3
Carub.0004s2418 Capsella rubella HOM05D004060 ORTHO05D004967 4.8e-27 125.9 270 60.0
C04p03110 Brassica napus HOM05D004060 ORTHO05D004967 6.2e-27 125.6 257 49.0
BolC4t21952H Brassica oleracea HOM05D004060 ORTHO05D004967 6.2e-27 125.6 257 49.0
A05p02610 Brassica napus HOM05D004060 ORTHO05D004967 8.1e-27 125.2 257 57.2
Sopen04g007590 Solanum pennellii HOM05D004060 ORTHO05D004967 1.4e-26 124.4 322 53.1
ATR0332G033 Amborella trichopoda HOM05D004060 ORTHO05D004967 1.8e-26 124.0 274 57.3
BraA05t19254Z Brassica rapa HOM05D004060 ORTHO05D004967 2.4e-26 123.6 262 56.1
Carub.0005s2438 Capsella rubella HOM05D004060 ORTHO05D004967 2.4e-26 123.6 292 56.8
Sp5g05050 Schrenkiella parvula HOM05D004060 ORTHO05D004967 3.1e-26 123.2 299 55.2
AL4G40200 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 4.0e-26 122.9 278 57.6
DCAR_020477 Daucus carota HOM05D004060 ORTHO05D004967 6.9e-26 122.1 277 57.8
AT3G57540 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 1.5e-25 120.9 288 57.3
MBI04_g36073_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 1.5e-25 120.9 253 36.4
ECA247G2970 Erigeron canadensis HOM05D004060 ORTHO05D004967 2.6e-25 120.2 158 51.3
AL5G39120 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 3.4e-25 119.8 284 58.1
Os03g0808300 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 4.5e-25 119.4 278 55.0
Sp4g24140 Schrenkiella parvula HOM05D004060 ORTHO05D004967 9.9e-25 118.2 263 60.1
CARHR136960 Cardamine hirsuta HOM05D004060 ORTHO05D004967 1.3e-24 117.9 261 49.0
Glyma.02G182600 Glycine max HOM05D004060 ORTHO05D004967 2.2e-24 117.1 313 55.9
AT2G41870 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 2.9e-24 116.7 274 59.1
BcaC07g40371 Brassica carinata HOM05D004060 ORTHO05D004967 8.4e-24 115.2 300 55.0
C08p33070 Brassica napus HOM05D004060 ORTHO05D004967 8.4e-24 115.2 300 55.0
BolC8t50907H Brassica oleracea HOM05D004060 ORTHO05D004967 8.4e-24 115.2 300 55.0
Zm00001eb107230 Zea mays HOM05D004060 ORTHO05D004967 1.1e-23 114.8 261 48.3
SGA_v2.0_scaffold69G23102 Striga asiatica HOM05D004060 ORTHO05D004967 1.4e-23 114.4 199 44.2
Zm00001eb324720 Zea mays HOM05D004060 ORTHO05D004967 3.2e-23 113.2 301 52.8
Lj2C380T14 Lonicera japonica HOM05D004060 ORTHO05D004967 5.5e-23 112.5 125 56.8
THA.LOC104824453 Tarenaya hassleriana HOM05D004060 ORTHO05D004967 5.5e-23 112.5 285 58.6
Peaxi162Scf00493g00316 Petunia axillaris HOM05D004060 ORTHO05D004967 7.1e-23 112.1 210 41.0
A09p50400 Brassica napus HOM05D004060 ORTHO05D004967 9.3e-23 111.7 304 53.0
CAN.G676.50 Capsicum annuum HOM05D004060 ORTHO05D004967 7.9e-22 108.6 310 54.2
BraA09t40492Z Brassica rapa HOM05D004060 ORTHO05D004967 1.3e-21 107.8 297 54.5
Zm00001eb061820 Zea mays HOM05D004060 ORTHO05D004967 1.8e-21 107.5 172 43.0
Thhalv10006130m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 1.9e-20 104.0 297 53.5
MSTRG.10823 Avicennia marina HOM05D004060 ORTHO05D004967 3.3e-20 103.2 290 43.8
BcaC07g40387 Brassica carinata HOM05D004060 ORTHO05D004967 7.4e-20 102.1 293 54.9
Ca_29692_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 1.6e-19 100.9 163 77.3
BcaB02g07595 Brassica carinata HOM05D004060 ORTHO05D004967 4.0e-18 96.3 258 51.6
Solyc10g080230.2 Solanum lycopersicum HOM05D004060 ORTHO05D004967 6.9e-18 95.5 133 51.9
Os07g0208600 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 2.0e-17 94.0 287 49.5
Hund24724 Selenicereus undatus HOM05D004060 ORTHO05D004967 3.8e-16 89.7 261 42.1
SalBow1G5147 Salvia bowleyana HOM05D004060 ORTHO05D004967 3.2e-15 86.7 170 42.4
arahy.Tifrunner.gnm1.ann1.49FMRE Arachis hypogaea HOM05D004060 ORTHO05D004967 4.2e-15 86.3 233 44.6
Glyma.10G099400 Glycine max HOM05D004060 ORTHO05D004967 3.3e-12 76.6 310 49.4
unitig_8.g4575 Utricularia gibba HOM05D004060 ORTHO05D004967 1.3e-11 74.7 282 50.0
ECA247G3737 Erigeron canadensis HOM05D003799 ORTHO05D001964 1.8e-10 70.9 143 47.6
Oeu056892.1 Olea europaea HOM05D004060 ORTHO05D004967 1.5e-09 67.8 89 55.1
HanXRQChr10g0300061 Helianthus annuus HOM05D004060 ORTHO05D004967 1.3e-08 64.7 250 35.2
arahy.Tifrunner.gnm1.ann1.N3K66E Arachis hypogaea HOM05D003004 ORTHO05D004967 2.9e-08 63.5 38 81.6
HanXRQChr05g0132091 Helianthus annuus HOM05D004060 ORTHO05D004967 2.9e-08 63.5 265 47.9
ECA236G0930 Erigeron canadensis HOM05D004060 ORTHO05D001964 1.9e-07 60.8 174 62.6
AUR62024421 Chenopodium quinoa HOM05D004060 ORTHO05D004967 2.5e-07 60.5 77 54.5
AUR62026012 Chenopodium quinoa HOM05D004060 ORTHO05D004967 1.6e-06 57.8 100 45.0
HPP92_019616 Vanilla planifolia HOM05D004060 ORTHO05D004967 2.7e-06 57.0 94 46.8
arahy.Tifrunner.gnm1.ann1.3TR3AL Arachis hypogaea HOM05D002100 ORTHO05D002310 4.6e-06 56.2 38 73.7


User provided reference genes

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