Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022144 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 1.0e-105 386.7 189 100.0
vmacro18518 Vaccinium macrocarpon HOM05D005902 ORTHO05D007182 2.0e-98 362.5 189 91.0
Rhsim08G0020200 Rhododendron simsii HOM05D005902 ORTHO05D007182 2.9e-97 358.6 189 90.5
Cc07_g13000 Coffea canephora HOM05D005902 ORTHO05D007182 6.5e-97 357.5 189 89.4
Nn3g18467 Nelumbo nucifera HOM05D005902 ORTHO05D007182 1.5e-96 356.3 189 87.8
Actinidia35717 Actinidia chinensis HOM05D005902 ORTHO05D007182 1.9e-96 355.9 189 91.5
Manes.05G062600 Manihot esculenta HOM05D005902 ORTHO05D007182 4.2e-96 354.8 189 89.9
Hma1.2p1_0158F.1_g069840 Hydrangea macrophylla HOM05D005902 ORTHO05D007182 5.5e-96 354.4 188 88.8
Peaxi162Scf00525g00623 Petunia axillaris HOM05D005902 ORTHO05D007182 5.5e-96 354.4 188 90.4
CAN.G1464.8 Capsicum annuum HOM05D005902 ORTHO05D007182 7.2e-96 354.0 189 89.4
Lj2A514T43 Lonicera japonica HOM05D005902 ORTHO05D007182 7.2e-96 354.0 189 91.0
Nitab4.5_0017196g0010 Nicotiana tabacum HOM05D005902 ORTHO05D007182 9.4e-96 353.6 189 89.4
Dinv28227 Davidia involucrata HOM05D005902 ORTHO05D007182 2.1e-95 352.4 189 89.4
Haze_14303 Corylus avellana HOM05D005902 ORTHO05D007182 3.6e-95 351.7 189 89.4
PGSC0003DMG400023318 Solanum tuberosum HOM05D005902 ORTHO05D007182 4.7e-95 351.3 189 89.4
TWI53G1594 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 8.0e-95 350.5 189 88.4
Solyc05g056560.3 Solanum lycopersicum HOM05D005902 ORTHO05D007182 1.8e-94 349.4 189 88.4
Sopen05g034960 Solanum pennellii HOM05D005902 ORTHO05D007182 1.8e-94 349.4 189 88.4
CiPaw.03G078000 Carya illinoinensis HOM05D005902 ORTHO05D007182 2.3e-94 349.0 189 88.9
Nitab4.5_0000905g0130 Nicotiana tabacum HOM05D005902 ORTHO05D007182 2.3e-94 349.0 189 88.4
Ciclev10005984m.g Citrus clementina HOM05D005902 ORTHO05D007182 3.0e-94 348.6 189 86.8
RcHm_v2.0_Chr3g0493321 Rosa chinensis HOM05D005902 ORTHO05D007182 4.0e-94 348.2 189 89.4
Cfa007771 Carpinus fangiana HOM05D005902 ORTHO05D007182 5.2e-94 347.8 189 88.9
PGR031G2550 Punica granatum HOM05D005902 ORTHO05D007182 5.2e-94 347.8 189 85.7
CsaV3_3G020300 Cucumis sativus L. HOM05D005902 ORTHO05D007182 1.2e-93 346.7 189 86.2
Lsat_1_v5_gn_8_111480 Lactuca sativa HOM05D005902 ORTHO05D007182 1.2e-93 346.7 192 88.0
PSO063G5475 Papaver somniferum HOM05D005902 ORTHO05D007182 1.5e-93 346.3 189 86.8
TAR371G0118 Trochodendron aralioides HOM05D005902 ORTHO05D007182 1.5e-93 346.3 189 86.2
MELO3C023753.2 Cucumis melo HOM05D005902 ORTHO05D007182 2.0e-93 345.9 189 86.2
MBI13_g21692_MAGBIO Magnolia biondii HOM05D005902 ORTHO05D007182 2.0e-93 345.9 189 87.3
FAN26G1601 Fragaria x ananassa HOM05D005902 ORTHO05D007182 2.6e-93 345.5 189 88.4
MD17G1258000 Malus domestica HOM05D005902 ORTHO05D007182 2.6e-93 345.5 188 88.8
FAN28G1805 Fragaria x ananassa HOM05D005902 ORTHO05D007182 9.7e-93 343.6 189 87.8
ClCG05G012140 Citrullus lanatus HOM05D005902 ORTHO05D007182 1.3e-92 343.2 189 85.7
arahy.Tifrunner.gnm1.ann1.YJU2T0 Arachis hypogaea HOM05D005902 ORTHO05D007182 1.7e-92 342.8 191 85.3
FAN19G0020 Fragaria x ananassa HOM05D005902 ORTHO05D007182 1.7e-92 342.8 189 87.8
Thecc.01G244600 Theobroma cacao HOM05D005902 ORTHO05D007182 1.7e-92 342.8 189 86.8
arahy.Tifrunner.gnm1.ann1.00Q11I Arachis hypogaea HOM05D005902 ORTHO05D007182 3.7e-92 341.7 191 84.8
MD09G1263000 Malus domestica HOM05D005902 ORTHO05D007182 3.7e-92 341.7 189 87.3
TWI74G1040 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 3.7e-92 341.7 189 85.2
GSVIVG01026316001 Vitis vinifera HOM05D005902 ORTHO05D007182 1.1e-91 340.1 191 86.4
MSTRG.15644 Avicennia marina HOM05D005902 ORTHO05D007182 2.4e-91 339.0 191 85.3
VMungo0647G1816 Vigna mungo HOM05D005902 ORTHO05D007182 3.1e-91 338.6 190 86.3
PSO782G1752 Papaver somniferum HOM05D005902 ORTHO05D007182 4.1e-91 338.2 189 85.2
HanXRQChr09g0259821 Helianthus annuus HOM05D005902 ORTHO05D007182 5.3e-91 337.8 192 86.5
MSTRG.3687 Avicennia marina HOM05D005902 ORTHO05D007182 7.0e-91 337.4 191 85.3
Lalb_Chr10g0104081 Lupinus albus HOM05D005902 ORTHO05D007182 9.1e-91 337.0 194 84.5
Oeu009432.1 Olea europaea HOM05D005902 ORTHO05D007182 9.1e-91 337.0 192 84.9
Oeu048966.1 Olea europaea HOM05D005902 ORTHO05D007182 9.1e-91 337.0 192 85.4
SGA_v2.0_scaffold45G17133 Striga asiatica HOM05D005902 ORTHO05D007182 1.6e-90 336.3 191 85.3
Migut.K01111 Erythranthe guttata HOM05D005902 ORTHO05D007182 2.0e-90 335.9 191 84.8
Glyma.02G242000 Glycine max HOM05D005902 ORTHO05D007182 2.7e-90 335.5 189 85.7
QL02p060024 Quercus lobata HOM05D005902 ORTHO05D007182 3.5e-90 335.1 188 85.6
Sed0000187 Sechium edule HOM05D005902 ORTHO05D007182 4.5e-90 334.7 189 83.1
Atru.chr1.1947 Acer truncatum HOM05D005902 ORTHO05D007182 5.9e-90 334.3 189 83.6
CANSAT80G0886 Cannabis sativa HOM05D005902 ORTHO05D007182 7.7e-90 334.0 193 81.9
Glyma.14G211800 Glycine max HOM05D005902 ORTHO05D007182 7.7e-90 334.0 189 85.2
Prupe.3G160700 Prunus persica HOM05D005902 ORTHO05D007182 1.0e-89 333.6 189 85.2
Potri.004G082100 Populus trichocarpa HOM05D005902 ORTHO05D007182 1.3e-89 333.2 189 82.0
Ca_05775_v3 Cicer arietinum L. HOM05D005902 ORTHO05D007182 2.9e-89 332.0 192 83.3
TPR.G9985 Trifolium pratense HOM05D005902 ORTHO05D007182 3.8e-89 331.6 192 84.9
Duzib187G0521 Durio zibethinus HOM05D005902 ORTHO05D007182 5.0e-89 331.3 189 83.1
Phvul.008G239100 Phaseolus vulgaris HOM05D005902 ORTHO05D007182 5.0e-89 331.3 191 84.3
DCAR_010066 Daucus carota HOM05D005902 ORTHO05D007182 6.5e-89 330.9 189 82.5
LjContig00141g0001362 Lotus japonicus HOM05D005902 ORTHO05D007182 1.5e-88 329.7 192 82.8
Psat2g044640 Pisum sativum HOM05D005902 ORTHO05D007182 1.5e-88 329.7 192 83.3
Gohir.D12G002400 Gossypium hirsutum HOM05D005902 ORTHO05D007182 2.5e-88 328.9 189 82.0
Medtr5g077260 Medicago truncatula HOM05D005902 ORTHO05D007182 2.5e-88 328.9 192 82.8
Sabra04G0054600 Salix brachista HOM05D005902 ORTHO05D007182 2.5e-88 328.9 189 81.0
Cpa.g.sc178.4 Carica papaya HOM05D005902 ORTHO05D007182 3.2e-88 328.6 189 80.4
Duzib264G0381 Durio zibethinus HOM05D005902 ORTHO05D007182 3.2e-88 328.6 189 82.0
Lalb_Chr17g0345911 Lupinus albus HOM05D005902 ORTHO05D007182 3.2e-88 328.6 194 82.0
THA.LOC104822070 Tarenaya hassleriana HOM05D005902 ORTHO05D007182 7.2e-88 327.4 192 80.7
Aqoxy3G04009 Aquilegia oxysepala HOM05D005902 ORTHO05D007182 1.2e-87 326.6 190 78.9
SalBow5G2060 Salvia bowleyana HOM05D005902 ORTHO05D007182 1.2e-87 326.6 191 82.7
AUR62039116 Chenopodium quinoa HOM05D005902 ORTHO05D007182 1.6e-87 326.2 189 79.9
ATR0598G055 Amborella trichopoda HOM05D005902 ORTHO05D007182 2.7e-87 325.5 189 82.5
AUR62009143 Chenopodium quinoa HOM05D005902 ORTHO05D007182 4.7e-87 324.7 189 80.4
Gohir.A12G002700 Gossypium hirsutum HOM05D005902 ORTHO05D007182 4.7e-87 324.7 189 80.4
Hund03335 Selenicereus undatus HOM05D005902 ORTHO05D007182 8.0e-87 323.9 191 81.2
EL10Ac2g03874 Beta vulgaris HOM05D005902 ORTHO05D007182 1.0e-86 323.6 191 80.6
BraA07t30938Z Brassica rapa HOM05D005902 ORTHO05D007182 2.3e-86 322.4 191 81.2
ECA240G4510 Erigeron canadensis HOM05D005902 ORTHO05D007182 4.0e-86 321.6 194 80.4
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 4.0e-86 321.6 188 80.9
Gorai.008G001800 Gossypium raimondii HOM05D005902 ORTHO05D007182 5.2e-86 321.2 184 82.1
Sc09g0004530 Simmondsia chinensis HOM05D005902 ORTHO05D007182 5.2e-86 321.2 192 80.7
A07p33100 Brassica napus HOM05D005902 ORTHO05D007182 2.0e-85 319.3 191 80.6
BcaC08g46080 Brassica carinata HOM05D005902 ORTHO05D007182 3.4e-85 318.5 191 80.6
BolC6t39030H Brassica oleracea HOM05D005902 ORTHO05D007182 3.4e-85 318.5 191 80.6
C06p39370 Brassica napus HOM05D005902 ORTHO05D007182 4.4e-85 318.2 191 80.6
COL.COLO4_08161 Corchorus olitorius HOM05D005902 ORTHO05D007182 5.7e-85 317.8 178 86.5
unitig_748.g7250 Utricularia gibba HOM05D005902 ORTHO05D007182 5.7e-85 317.8 188 80.9
BcaB05g24153 Brassica carinata HOM05D005902 ORTHO05D007182 9.8e-85 317.0 191 80.1
C02p21750 Brassica napus HOM05D005902 ORTHO05D007182 9.8e-85 317.0 191 80.1
Aa31LG2G2820 Aethionema arabicum HOM05D005902 ORTHO05D007182 1.7e-84 316.2 191 79.1
A02p13450 Brassica napus HOM05D005902 ORTHO05D007182 1.7e-84 316.2 191 80.1
BraA02t06403Z Brassica rapa HOM05D005902 ORTHO05D007182 1.7e-84 316.2 191 80.1
AL2G23690 Arabidopsis lyrata HOM05D005902 ORTHO05D007182 4.8e-84 314.7 191 79.1
BcaB03g15295 Brassica carinata HOM05D005902 ORTHO05D007182 4.8e-84 314.7 189 79.9
AT1G66080 Arabidopsis thaliana HOM05D005902 ORTHO05D007182 6.3e-84 314.3 191 79.1
CDE05G1035 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 1.8e-83 312.8 189 78.8
Carub.0002s1207 Capsella rubella HOM05D005902 ORTHO05D007182 3.1e-83 312.0 191 78.5
CDE05G2622 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 4.1e-83 311.6 189 78.8
Thhalv10019182m.g Eutrema salsugineum HOM05D005902 ORTHO05D007182 4.1e-83 311.6 191 79.1
CARHR058040 Cardamine hirsuta HOM05D005902 ORTHO05D007182 1.2e-82 310.1 191 77.5
Sed0027099 Sechium edule HOM05D005902 ORTHO05D007182 1.2e-82 310.1 189 81.5
CSS0046217 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 9.2e-75 283.9 147 94.6
TAR629G3091 Trochodendron aralioides HOM05D005902 ORTHO05D007182 2.0e-74 282.7 176 77.8
SMO278G0026 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 8.6e-73 277.3 187 66.3
AagrBONN_evm.TU.Sc2ySwM_344.787 Anthoceros agrestis HOM05D005902 ORTHO05D007182 5.2e-70 268.1 191 67.5
Mapoly0006s0187 Marchantia polymorpha HOM05D005902 ORTHO05D007182 3.4e-69 265.4 189 67.2
Ah.10g034300 Amaranthus hybridus HOM05D005902 ORTHO05D007182 5.8e-69 264.6 157 80.3
FvH4_1g28840 Fragaria vesca HOM05D005902 ORTHO05D007182 1.1e-67 260.4 146 88.4
Pp3c27_3020 Physcomitrium patens HOM05D005902 ORTHO05D007182 1.4e-67 260.0 190 65.3
Sp5g21150 Schrenkiella parvula HOM05D005902 ORTHO05D007182 6.0e-66 254.6 158 77.8
Pp3c16_2230 Physcomitrium patens HOM05D005902 ORTHO05D007182 1.2e-63 246.9 190 62.6
Pp3c3_23430 Physcomitrium patens HOM05D005902 ORTHO05D007182 1.7e-57 226.5 183 55.2
SMO367G0342 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 3.0e-57 225.7 190 53.2
Pp3c10_12120 Physcomitrium patens HOM05D005902 ORTHO05D007182 5.1e-57 224.9 183 55.2
CSS0023311 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 8.6e-57 224.2 182 66.5
HPP92_002287 Vanilla planifolia HOM05D005902 ORTHO05D007182 1.6e-55 219.9 149 72.5
CBR_g54208 Chara braunii HOM05D005902 ORTHO05D007182 8.3e-52 207.6 185 56.2
Mapoly0001s0397 Marchantia polymorpha HOM05D005902 ORTHO05D007182 3.9e-49 198.7 187 50.3
CBR_g54207 Chara braunii HOM05D005902 ORTHO05D007182 1.9e-48 196.4 182 53.3
Zm00001eb010060 Zea mays HOM05D005902 ORTHO05D007182 3.8e-44 182.2 192 51.6
Os03g0237500 Oryza sativa ssp. japonica HOM05D005902 ORTHO05D007182 1.9e-43 179.9 190 52.1
BcaC03g14730 Brassica carinata HOM05D005902 ORTHO05D007182 1.1e-38 164.1 94 84.0
MD03G1052600 Malus domestica HOM05D005902 ORTHO05D007182 6.6e-33 144.8 91 75.8
MCO11G231 Micromonas commoda HOM05D005902 ORTHO05D007182 2.2e-28 129.8 183 39.3
Cre16.g691215 Chlamydomonas reinhardtii HOM05D005902 ORTHO05D007182 2.3e-25 119.8 185 35.7
MD01G1041600 Malus domestica HOM05D005902 ORTHO05D007182 2.3e-25 119.8 79 72.2
MD16G1261800 Malus domestica HOM05D005902 ORTHO05D007182 3.4e-21 105.9 51 92.2
PRCOL_00005463 Prasinoderma coloniale HOM05D005902 ORTHO05D007182 2.5e-11 73.2 161 30.4
CSS0027287 Camellia sinensis var. sinensis HOM05D000006 ORTHO05D000001 1.8e-09 67.0 31 96.8
BolC2t08309H Brassica oleracea HOM05D005902 ORTHO05D007182 1.4e-06 57.4 28 85.7


User provided reference genes

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