Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022139 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 3.4e-294 1014.2 508 100.0
CSS0018899 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 8.5e-293 1009.6 508 99.6
Hma1.2p1_0547F.1_g176330 Hydrangea macrophylla HOM05D005722 ORTHO05D007934 2.4e-247 858.6 506 83.0
QL07p041452 Quercus lobata HOM05D005722 ORTHO05D007934 3.2e-247 858.2 506 83.8
CiPaw.09G004900 Carya illinoinensis HOM05D005722 ORTHO05D007934 9.2e-247 856.7 505 83.8
TAR623G1222 Trochodendron aralioides HOM05D005722 ORTHO05D007934 2.3e-245 852.0 500 83.2
Potri.006G119500 Populus trichocarpa HOM05D005722 ORTHO05D007934 1.2e-243 846.3 505 81.8
Cfa016476 Carpinus fangiana HOM05D005722 ORTHO05D007934 3.6e-243 844.7 503 82.7
vmacro23004 Vaccinium macrocarpon HOM05D005722 ORTHO05D007934 3.6e-243 844.7 507 83.0
Rhsim03G0086400 Rhododendron simsii HOM05D005722 ORTHO05D007934 4.7e-243 844.3 504 82.7
FAN05G1451 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.5e-241 839.3 503 81.7
Sabra06G0094100 Salix brachista HOM05D005722 ORTHO05D007934 1.5e-241 839.3 505 82.8
Prupe.7G123300 Prunus persica HOM05D005722 ORTHO05D007934 3.4e-241 838.2 502 82.9
Duzib128G0866 Durio zibethinus HOM05D005722 ORTHO05D007934 9.9e-241 836.6 504 82.1
FAN05G4610 Fragaria x ananassa HOM05D005722 ORTHO05D007934 9.9e-241 836.6 503 81.5
COL.COLO4_22250 Corchorus olitorius HOM05D005722 ORTHO05D007934 1.7e-240 835.9 493 82.6
FvH4_6g17170 Fragaria vesca HOM05D005722 ORTHO05D007934 4.9e-240 834.3 503 81.5
Atru.chr8.1708 Acer truncatum HOM05D005722 ORTHO05D007934 1.9e-239 832.4 504 80.4
Manes.09G048478 Manihot esculenta HOM05D005722 ORTHO05D007934 2.7e-238 828.6 500 81.6
Cpa.g.sc5.129 Carica papaya HOM05D005722 ORTHO05D007934 4.6e-238 827.8 506 79.6
Thecc.05G075200 Theobroma cacao HOM05D005722 ORTHO05D007934 7.8e-238 827.0 504 80.2
Gohir.A09G143300 Gossypium hirsutum HOM05D005722 ORTHO05D007934 1.9e-236 822.4 505 80.2
RcHm_v2.0_Chr3g0471261 Rosa chinensis HOM05D005722 ORTHO05D007934 1.9e-236 822.4 503 80.1
Gorai.006G160000 Gossypium raimondii HOM05D005722 ORTHO05D007934 1.6e-235 819.3 505 80.0
MD12G1103200 Malus domestica HOM05D005722 ORTHO05D007934 1.4e-234 816.2 504 80.4
Peaxi162Scf00138g00041 Petunia axillaris HOM05D005722 ORTHO05D007934 1.4e-234 816.2 504 79.8
Cc06_g04740 Coffea canephora HOM05D005722 ORTHO05D007934 1.5e-233 812.8 506 78.9
PGSC0003DMG400003879 Solanum tuberosum HOM05D005722 ORTHO05D007934 1.7e-232 809.3 493 80.3
Nitab4.5_0004731g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 2.2e-232 808.9 503 78.9
PSO063G5110 Papaver somniferum HOM05D005722 ORTHO05D007934 8.4e-232 807.0 501 78.8
PSO339G6299 Papaver somniferum HOM05D005722 ORTHO05D007934 8.4e-232 807.0 501 78.8
MSTRG.19206 Avicennia marina HOM05D005722 ORTHO05D007934 4.2e-231 804.7 506 78.1
TWI74G0410 Tripterygium wilfordii HOM05D005722 ORTHO05D007934 1.2e-230 803.1 506 78.9
Sopen09g003380 Solanum pennellii HOM05D005722 ORTHO05D007934 1.6e-230 802.7 493 78.9
Ciclev10011424m.g Citrus clementina HOM05D005722 ORTHO05D007934 3.5e-230 801.6 492 79.9
CAN.G1038.3 Capsicum annuum HOM05D005722 ORTHO05D007934 4.6e-230 801.2 495 78.8
CANSAT56G0690 Cannabis sativa HOM05D005722 ORTHO05D007934 7.8e-230 800.4 482 81.5
Glyma.13G147700 Glycine max HOM05D005722 ORTHO05D007934 3.0e-229 798.5 504 77.8
AUR62026979 Chenopodium quinoa HOM05D005722 ORTHO05D007934 3.9e-229 798.1 501 78.0
Glyma.10G063100 Glycine max HOM05D005722 ORTHO05D007934 3.9e-229 798.1 504 77.4
Nn2g13890 Nelumbo nucifera HOM05D005722 ORTHO05D007934 1.1e-228 796.6 496 78.6
Aqoxy1G01041 Aquilegia oxysepala HOM05D005722 ORTHO05D007934 1.9e-228 795.8 508 77.0
Migut.J00472 Erythranthe guttata HOM05D005722 ORTHO05D007934 1.9e-228 795.8 489 79.8
EL10Ac7g16706 Beta vulgaris HOM05D005722 ORTHO05D007934 2.5e-228 795.4 502 78.3
Ah.08g211270 Amaranthus hybridus HOM05D005722 ORTHO05D007934 3.3e-228 795.0 507 77.9
PGR004G2571 Punica granatum HOM05D005722 ORTHO05D007934 1.2e-227 793.1 497 80.1
VMungo0720G2103 Vigna mungo HOM05D005722 ORTHO05D007934 4.7e-227 791.2 504 76.4
Lj5g0013810 Lotus japonicus HOM05D005722 ORTHO05D007934 6.2e-227 790.8 489 77.9
AUR62042706 Chenopodium quinoa HOM05D005722 ORTHO05D007934 1.1e-226 790.0 501 77.4
Lj1g0006800 Lotus japonicus HOM05D005722 ORTHO05D007934 1.4e-226 789.6 489 78.7
Phvul.007G226300 Phaseolus vulgaris HOM05D005722 ORTHO05D007934 4.0e-226 788.1 504 77.8
DCAR_015016 Daucus carota HOM05D005722 ORTHO05D007934 6.9e-226 787.3 485 79.0
Lalb_Chr02g0155431 Lupinus albus HOM05D005722 ORTHO05D007934 3.4e-225 785.0 490 79.4
Lalb_Chr25g0288811 Lupinus albus HOM05D005722 ORTHO05D007934 5.8e-225 784.3 486 79.8
THA.LOC104816667 Tarenaya hassleriana HOM05D005722 ORTHO05D007934 5.8e-225 784.3 482 79.9
Medtr1g062130 Medicago truncatula HOM05D005722 ORTHO05D007934 2.2e-224 782.3 503 75.1
C03p01590 Brassica napus HOM05D005722 ORTHO05D007934 2.4e-223 778.9 495 78.0
BolC3t12711H Brassica oleracea HOM05D005722 ORTHO05D007934 7.1e-223 777.3 492 78.3
Carub.0006s0238 Capsella rubella HOM05D005722 ORTHO05D007934 7.1e-223 777.3 495 76.6
A03p01230 Brassica napus HOM05D005722 ORTHO05D007934 1.2e-222 776.5 492 78.0
BraA03t09503Z Brassica rapa HOM05D005722 ORTHO05D007934 1.2e-222 776.5 492 77.8
Sp6g39190 Schrenkiella parvula HOM05D005722 ORTHO05D007934 2.7e-222 775.4 494 76.1
TPR.G31667 Trifolium pratense HOM05D005722 ORTHO05D007934 3.5e-222 775.0 493 77.7
Thhalv10015725m.g Eutrema salsugineum HOM05D005722 ORTHO05D007934 1.3e-221 773.1 484 77.1
arahy.Tifrunner.gnm1.ann1.D7QF3J Arachis hypogaea HOM05D005722 ORTHO05D007934 5.1e-221 771.2 488 77.5
arahy.Tifrunner.gnm1.ann1.P0W3IN Arachis hypogaea HOM05D005722 ORTHO05D007934 5.1e-221 771.2 488 77.5
CARHR209770 Cardamine hirsuta HOM05D005722 ORTHO05D007934 5.1e-221 771.2 492 76.4
Aa31LG1G21640 Aethionema arabicum HOM05D005722 ORTHO05D007934 1.1e-220 770.0 493 76.7
Ca_04564_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 1.5e-220 769.6 489 76.7
MBI18_g39612_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 1.9e-220 769.2 492 76.6
Solyc09g008550.4 Solanum lycopersicum HOM05D005722 ORTHO05D007934 3.3e-220 768.5 464 80.2
Haze_19473 Corylus avellana HOM05D005722 ORTHO05D007934 7.3e-220 767.3 450 84.0
Lsat_1_v5_gn_2_20401 Lactuca sativa HOM05D005722 ORTHO05D007934 2.8e-219 765.4 492 76.4
Psat3g038760 Pisum sativum HOM05D005722 ORTHO05D007934 2.8e-219 765.4 476 78.8
AT5G03555 Arabidopsis thaliana HOM05D005722 ORTHO05D007934 3.6e-219 765.0 484 76.9
Psat6g077240 Pisum sativum HOM05D005722 ORTHO05D007934 1.1e-218 763.5 492 74.8
AL6G13040 Arabidopsis lyrata HOM05D005722 ORTHO05D007934 3.1e-218 761.9 484 76.4
Medtr7g102810 Medicago truncatula HOM05D005722 ORTHO05D007934 5.3e-218 761.1 475 78.7
Sc20g0005780 Simmondsia chinensis HOM05D005722 ORTHO05D007934 6.9e-218 760.8 505 74.5
TPR.G22453 Trifolium pratense HOM05D005722 ORTHO05D007934 3.4e-217 758.4 502 74.7
ECA238G3369 Erigeron canadensis HOM05D005722 ORTHO05D007934 7.6e-217 757.3 492 74.6
SalBow3G1081 Salvia bowleyana HOM05D005722 ORTHO05D007934 1.7e-216 756.1 504 74.8
SalBow3G1392 Salvia bowleyana HOM05D005722 ORTHO05D007934 8.4e-216 753.8 504 74.6
HanXRQChr14g0432851 Helianthus annuus HOM05D005722 ORTHO05D007934 1.1e-215 753.4 490 75.7
SGA_v2.0_scaffold75G24819 Striga asiatica HOM05D005722 ORTHO05D007934 1.9e-215 752.7 485 75.5
Gohir.D09G139500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 4.2e-215 751.5 454 81.9
Gohir.D09G139600 Gossypium hirsutum HOM05D005722 ORTHO05D007934 1.3e-213 746.5 488 74.6
Gorai.006G160100 Gossypium raimondii HOM05D005722 ORTHO05D007934 1.3e-213 746.5 488 74.6
ClCG10G019670 Citrullus lanatus HOM05D005722 ORTHO05D007934 3.9e-213 745.0 480 74.8
Gohir.A09G143500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 8.1e-211 737.3 488 74.2
Nitab4.5_0003906g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 9.0e-210 733.8 503 73.4
FAN02G1363 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.2e-209 733.4 464 79.7
MELO3C009405.2 Cucumis melo HOM05D005722 ORTHO05D007934 1.5e-209 733.0 479 74.7
unitig_578.g15784 Utricularia gibba HOM05D005722 ORTHO05D007934 5.5e-207 724.5 482 73.4
FAN14G5091 Fragaria x ananassa HOM05D005722 ORTHO05D007934 6.0e-206 721.1 439 80.9
CsaV3_3G036500 Cucumis sativus L. HOM05D005722 ORTHO05D007934 1.5e-204 716.5 479 73.1
Sed0005717 Sechium edule HOM05D005722 ORTHO05D007934 2.0e-201 706.1 496 71.0
ATR0009G019 Amborella trichopoda HOM05D005722 ORTHO05D007934 2.6e-201 705.7 496 70.4
Dinv35829 Davidia involucrata HOM05D005722 ORTHO05D007934 1.3e-197 693.3 481 73.2
MBI18_g19054_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 1.3e-197 693.3 505 66.5
MBI18_g31623_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 3.9e-197 691.8 505 67.3
MBI18_g39457_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 8.7e-197 690.6 505 67.1
GSVIVG01033705001 Vitis vinifera HOM05D005722 ORTHO05D007934 2.9e-192 675.6 496 70.4
Ca_30109_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 1.9e-191 672.9 410 79.3
SEGI_35570 Sequoiadendron giganteum HOM05D005722 ORTHO05D007934 1.6e-190 669.8 480 66.2
Eucgr.A01597 Eucalyptus grandis HOM05D005722 ORTHO05D007934 2.3e-189 666.0 507 67.5
Cfa016468 Carpinus fangiana HOM05D005722 ORTHO05D007934 9.7e-188 660.6 445 74.8
Os02g0666700 Oryza sativa ssp. japonica HOM05D005722 ORTHO05D007934 2.2e-184 649.4 475 65.9
Zm00001eb249990 Zea mays HOM05D005722 ORTHO05D007934 5.5e-183 644.8 473 65.1
HPP92_025568 Vanilla planifolia HOM05D005722 ORTHO05D007934 5.7e-180 634.8 461 67.5
Cc06_g04750 Coffea canephora HOM05D005722 ORTHO05D007934 2.1e-174 616.3 504 61.7
CDE08G1312 Ceratophyllum demersum HOM05D005722 ORTHO05D007934 7.4e-172 607.8 414 73.7
Mapoly0002s0120 Marchantia polymorpha HOM05D005722 ORTHO05D007934 1.4e-165 587.0 472 58.5
Pp3c14_20990 Physcomitrium patens HOM05D005722 ORTHO05D007934 5.7e-164 581.6 474 59.1
SMO115G0026 Selaginella moellendorffii HOM05D005722 ORTHO05D007934 9.7e-164 580.9 485 59.4
Pp3c1_30640 Physcomitrium patens HOM05D005722 ORTHO05D007934 1.4e-162 577.0 477 58.7
Actinidia26637 Actinidia chinensis HOM05D005722 ORTHO05D007934 7.5e-156 554.7 450 65.8
Cre09.g389356 Chlamydomonas reinhardtii HOM05D005722 ORTHO05D007934 8.3e-147 524.6 474 53.8
Actinidia28931 Actinidia chinensis HOM05D005722 ORTHO05D007934 4.5e-145 518.8 405 68.4
Lj2P123T37 Lonicera japonica HOM05D005722 ORTHO05D007934 5.0e-144 515.4 323 80.5
Sc20g0005800 Simmondsia chinensis HOM05D005722 ORTHO05D007934 3.2e-138 496.1 328 73.8
MCO11G702 Micromonas commoda HOM05D005722 ORTHO05D007934 4.7e-126 455.7 507 47.1
PRCOL_00006021 Prasinoderma coloniale HOM05D005722 ORTHO05D007934 6.4e-123 445.3 485 48.5
Haze_19472 Corylus avellana HOM05D005722 ORTHO05D007934 1.6e-73 281.2 212 67.5
Cfa025019 Carpinus fangiana HOM05D005722 ORTHO05D123305 3.8e-67 260.0 476 32.4
Haze_02843 Corylus avellana HOM05D005722 ORTHO05D029153 2.0e-60 237.7 143 79.7
Sc20g0005790 Simmondsia chinensis HOM05D005722 ORTHO05D029153 2.5e-42 177.6 114 73.7
Pp3s34_270 Physcomitrium patens HOM05D005722 ORTHO05D317165 2.3e-40 171.0 426 28.2
TPR.G39511 Trifolium pratense HOM05D005722 ORTHO05D029153 1.0e-27 129.0 72 83.3
Lsat_1_v5_gn_4_152401 Lactuca sativa HOM05D005722 ORTHO05D007934 2.1e-25 121.3 80 81.2
FAN14G5603 Fragaria x ananassa HOM05D005722 ORTHO05D029153 2.2e-22 111.3 63 82.5
MCO11G808 Micromonas commoda HOM05D005722 ORTHO05D268580 9.5e-18 95.9 423 24.8
MCO10G252 Micromonas commoda HOM05D005722 ORTHO05D270642 2.6e-15 87.8 468 26.9
Cfa016469 Carpinus fangiana HOM05D005722 ORTHO05D125356 2.9e-06 57.8 28 89.3


User provided reference genes

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