Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.0e-102 375.9 214 100.0
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 8.7e-90 334.0 201 94.5
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 8.7e-90 334.0 201 94.5
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.1e-89 333.6 210 91.0
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.4e-73 278.5 201 81.6
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.3e-72 276.9 201 81.1
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.7e-72 276.6 201 81.1
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.7e-72 275.4 201 80.6
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.8e-72 275.0 201 80.6
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.1e-71 273.9 201 80.6
CSS0019011 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.8e-63 246.5 201 74.1
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 9.8e-57 224.2 213 68.1
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.7e-54 216.1 210 63.8
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.5e-54 215.3 210 64.8
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 4.0e-50 202.2 212 62.3
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 3.4e-49 199.1 212 60.8
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.1e-47 194.1 215 59.5
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.0e-45 187.6 215 56.3
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.0e-45 187.6 215 56.3
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 1.9e-44 183.3 215 58.1
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 7.3e-44 181.4 213 55.4
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 9.5e-44 181.0 201 62.2
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 1.7e-40 170.2 215 53.0
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 3.2e-39 166.0 210 52.4
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 1.2e-38 164.1 215 52.6
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 4.6e-38 162.2 194 56.7
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 1.0e-37 161.0 215 52.1
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 1.0e-37 161.0 215 52.1
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 1.7e-37 160.2 206 52.9
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 6.6e-37 158.3 208 51.9
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 1.1e-36 157.5 220 49.5
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 4.7e-35 152.1 204 52.0
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 1.4e-34 150.6 206 51.5
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 1.8e-34 150.2 210 50.5
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 3.1e-34 149.4 213 48.8
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 8.9e-34 147.9 220 50.0
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 1.2e-33 147.5 201 52.7
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 4.4e-33 145.6 220 49.5
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 5.8e-33 145.2 212 49.5
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 9.8e-33 144.4 205 49.3
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 9.8e-33 144.4 212 49.1
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.7e-32 143.7 205 48.8
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 1.7e-32 143.7 206 50.5
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 2.2e-32 143.3 205 50.2
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 2.9e-32 142.9 213 47.4
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 2.9e-32 142.9 213 48.4
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 3.7e-32 142.5 205 49.3
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 1.9e-31 140.2 205 47.8
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 1.9e-31 140.2 181 55.8
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 5.4e-31 138.7 207 47.8
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 7.0e-31 138.3 197 49.7
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 9.2e-31 137.9 202 50.5
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 2.0e-30 136.7 217 48.8
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 2.7e-30 136.3 217 47.5
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 2.7e-30 136.3 199 50.3
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 7.8e-30 134.8 209 46.9
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 1.0e-29 134.4 205 48.3
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 1.7e-29 133.7 222 49.5
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 3.0e-29 132.9 200 48.5
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 5.0e-29 132.1 208 48.6
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 6.6e-29 131.7 201 46.8
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 2.5e-28 129.8 202 47.5
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 5.6e-28 128.6 200 47.5
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 5.6e-28 128.6 207 46.4
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 5.6e-28 128.6 217 47.9
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 5.6e-28 128.6 193 47.2
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 9.5e-28 127.9 223 45.3
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 1.2e-27 127.5 201 47.8
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 1.2e-27 127.5 187 45.5
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 1.2e-27 127.5 203 49.8
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 1.6e-27 127.1 186 45.2
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 2.1e-27 126.7 220 48.2
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 2.8e-27 126.3 211 43.6
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 3.6e-27 125.9 204 45.1
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 4.7e-27 125.6 178 46.6
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 6.2e-27 125.2 211 43.1
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 1.4e-26 124.0 200 48.5
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 1.4e-26 124.0 207 46.4
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 3.1e-26 122.9 200 46.5
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 5.2e-26 122.1 201 47.8
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 1.2e-25 120.9 219 44.3
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 1.5e-25 120.6 155 49.0
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 1.5e-25 120.6 208 45.2
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 1.5e-25 120.6 210 46.2
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 2.0e-25 120.2 200 47.5
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 2.0e-25 120.2 206 46.6
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 3.4e-25 119.4 160 48.1
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 7.5e-25 118.2 208 44.2
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 9.8e-25 117.9 212 43.4
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 1.3e-24 117.5 158 52.5
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 1.7e-24 117.1 189 45.0
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 1.7e-24 117.1 204 46.1
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 1.7e-24 117.1 203 45.3
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 1.9e-23 113.6 221 45.7
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 1.9e-23 113.6 206 43.2
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 2.4e-23 113.2 159 47.8
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 7.1e-23 111.7 202 43.6
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 7.8e-22 108.2 191 44.0
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 1.3e-21 107.5 142 50.0
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 1.3e-21 107.5 126 54.8
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 5.1e-21 105.5 209 40.7
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 5.1e-21 105.5 200 41.5
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 1.5e-20 104.0 179 45.3
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 2.5e-20 103.2 210 44.3
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 2.5e-20 103.2 216 41.2
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 4.3e-20 102.4 208 40.9
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 7.3e-20 101.7 205 42.0
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 7.3e-20 101.7 205 42.0
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 7.3e-20 101.7 208 41.8
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 1.6e-19 100.5 205 41.5
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 1.6e-19 100.5 141 47.5
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.6e-19 100.5 199 41.7
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 2.1e-19 100.1 209 43.1
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 2.1e-19 100.1 209 43.1
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 2.1e-19 100.1 213 44.1
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 2.1e-19 100.1 137 49.6
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 2.8e-19 99.8 202 42.6
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 2.8e-19 99.8 202 42.6
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 6.2e-19 98.6 212 43.9
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 6.2e-19 98.6 180 41.7
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 8.1e-19 98.2 214 41.6
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 1.1e-18 97.8 123 49.6
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 1.4e-18 97.4 211 39.3
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 1.4e-18 97.4 211 43.1
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 2.3e-18 96.7 216 43.1
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 2.0e-17 93.6 202 41.1
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 2.6e-17 93.2 213 40.4
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 2.1e-14 83.6 207 38.2
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 7.8e-14 81.6 203 35.0
COL.COLO4_30227 Corchorus olitorius HOM05D001156 ORTHO05D001006 7.8e-14 81.6 104 53.8
Os03g0750900 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 1.7e-13 80.5 156 42.3
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 8.6e-13 78.2 201 37.8
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 3.3e-12 76.3 205 36.6
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 4.3e-12 75.9 132 42.4
FAN11G0338 Fragaria x ananassa HOM05D004683 ORTHO05D035386 9.6e-12 74.7 95 52.6
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 1.2e-11 74.3 210 36.2
Ca_00746_v3 Cicer arietinum L. HOM05D004683 ORTHO05D005388 5.8e-09 65.5 95 47.4
A09p40660 Brassica napus HOM05D004683 ORTHO05D005388 7.6e-09 65.1 58 62.1
Zm00001eb057420 Zea mays HOM05D004683 ORTHO05D005388 2.9e-08 63.2 175 37.1
Zm00001eb214850 Zea mays HOM05D004683 ORTHO05D005388 1.1e-07 61.2 174 36.2
CAN.G1263.24 Capsicum annuum HOM05D004683 ORTHO05D005388 4.2e-07 59.3 159 32.1
FvH4_3g38640 Fragaria vesca HOM05D037407 ORTHO05D035386 7.1e-07 58.5 75 52.0
ECA246G4668 Erigeron canadensis HOM05D004683 ORTHO05D005388 3.5e-06 56.2 129 37.2
FvH4_3g16370 Fragaria vesca HOM05D037407 ORTHO05D035386 3.5e-06 56.2 80 45.0


User provided reference genes

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