Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022118 Camellia sinensis var. sinensis HOM05D006358 ORTHO05D008185 5.6e-33 143.7 71 100.0
PGSC0003DMG400032149 Solanum tuberosum HOM05D006358 ORTHO05D008185 4.0e-23 110.9 64 78.1
Actinidia01838 Actinidia chinensis HOM05D006358 ORTHO05D008185 2.6e-22 108.2 64 78.1
CAN.G140.8 Capsicum annuum HOM05D006358 ORTHO05D008185 2.6e-22 108.2 65 76.9
Peaxi162Scf00192g00019 Petunia axillaris HOM05D006358 ORTHO05D008185 2.6e-22 108.2 65 76.9
Nitab4.5_0003436g0040 Nicotiana tabacum HOM05D006358 ORTHO05D008185 4.4e-22 107.5 65 75.4
vmacro21759 Vaccinium macrocarpon HOM05D006358 ORTHO05D008185 5.8e-22 107.1 66 77.3
Solyc01g006330.4 Solanum lycopersicum HOM05D006358 ORTHO05D008185 7.5e-22 106.7 64 75.0
Sopen01g002330 Solanum pennellii HOM05D006358 ORTHO05D008185 9.8e-22 106.3 64 75.0
Nitab4.5_0005041g0010 Nicotiana tabacum HOM05D006358 ORTHO05D008185 1.7e-21 105.5 65 72.3
Eucgr.B02608 Eucalyptus grandis HOM05D006358 ORTHO05D008185 4.9e-21 104.0 63 74.6
Hma1.2p1_0050F.1_g029070 Hydrangea macrophylla HOM05D006358 ORTHO05D008185 4.9e-21 104.0 66 75.8
Prupe.6G013900 Prunus persica HOM05D006358 ORTHO05D008185 8.3e-21 103.2 66 71.2
Rhsim13G0227500 Rhododendron simsii HOM05D006358 ORTHO05D009383 8.3e-21 103.2 64 75.0
Cc01_g03170 Coffea canephora HOM05D006358 ORTHO05D008185 1.4e-20 102.4 71 66.2
TAR633G2634 Trochodendron aralioides HOM05D006358 ORTHO05D008185 3.2e-20 101.3 66 72.7
Cfa009639 Carpinus fangiana HOM05D006358 ORTHO05D008185 7.0e-20 100.1 66 68.2
Nn2g15694 Nelumbo nucifera HOM05D006358 ORTHO05D008185 2.1e-19 98.6 66 71.2
Haze_23007 Corylus avellana HOM05D006358 ORTHO05D008185 2.7e-19 98.2 65 67.7
Manes.03G089800 Manihot esculenta HOM05D006358 ORTHO05D008185 2.7e-19 98.2 65 69.2
CiPaw.14G129700 Carya illinoinensis HOM05D006358 ORTHO05D008185 6.0e-19 97.1 66 66.7
CANSAT54G1685 Cannabis sativa HOM05D006358 ORTHO05D008185 1.3e-18 95.9 66 68.2
QL01p009947 Quercus lobata HOM05D006358 ORTHO05D008185 1.3e-18 95.9 67 62.7
Sabra01G0008700 Salix brachista HOM05D006358 ORTHO05D008185 1.3e-18 95.9 71 64.8
Hma1.2p1_0238F.1_g099790 Hydrangea macrophylla HOM05D006358 ORTHO05D008185 2.3e-18 95.1 66 71.2
PSO339G4609 Papaver somniferum HOM05D006358 ORTHO05D008185 3.9e-18 94.4 63 68.3
PSO384G4606 Papaver somniferum HOM05D006358 ORTHO05D008185 3.9e-18 94.4 66 65.2
Aqoxy1G00024 Aquilegia oxysepala HOM05D006358 ORTHO05D008185 5.1e-18 94.0 65 67.7
Ciclev10015496m.g Citrus clementina HOM05D006358 ORTHO05D008185 8.6e-18 93.2 71 60.6
Potri.001G011700 Populus trichocarpa HOM05D006358 ORTHO05D008185 8.6e-18 93.2 71 62.0
CsaV3_4G023700 Cucumis sativus L. HOM05D006358 ORTHO05D008185 1.1e-17 92.8 64 68.8
DCAR_024375 Daucus carota HOM05D006358 ORTHO05D008185 1.1e-17 92.8 71 60.6
Thecc.09G216800 Theobroma cacao HOM05D006358 ORTHO05D008185 1.1e-17 92.8 63 65.1
SGA_v2.0_scaffold1G00759 Striga asiatica HOM05D006358 ORTHO05D008185 1.9e-17 92.0 59 69.5
FvH4_3g44350 Fragaria vesca HOM05D006358 ORTHO05D008185 2.5e-17 91.7 66 66.7
FAN21G1333 Fragaria x ananassa HOM05D000259 ORTHO05D008185 2.5e-17 91.7 66 66.7
ECA248G2469 Erigeron canadensis HOM05D006358 ORTHO05D008185 5.6e-17 90.5 59 67.8
Gohir.A08G078500 Gossypium hirsutum HOM05D006358 ORTHO05D008185 5.6e-17 90.5 64 64.1
Duzib150G0556 Durio zibethinus HOM05D006358 ORTHO05D008185 7.3e-17 90.1 63 61.9
RcHm_v2.0_Chr5g0080731 Rosa chinensis HOM05D006358 ORTHO05D008185 7.3e-17 90.1 67 64.2
Oeu058541.2 Olea europaea HOM05D006358 ORTHO05D008185 9.5e-17 89.7 64 68.8
GSVIVG01025367001 Vitis vinifera HOM05D006358 ORTHO05D008185 9.5e-17 89.7 59 67.8
HanXRQChr11g0345451 Helianthus annuus HOM05D006358 ORTHO05D008185 1.2e-16 89.4 58 67.2
EL10Ac4g10334 Beta vulgaris HOM05D006358 ORTHO05D008185 1.6e-16 89.0 61 65.6
Gorai.004G092800 Gossypium raimondii HOM05D006358 ORTHO05D008185 2.1e-16 88.6 64 62.5
PGR119G1893 Punica granatum HOM05D006358 ORTHO05D008185 3.6e-16 87.8 63 61.9
TWI34G0094 Tripterygium wilfordii HOM05D006358 ORTHO05D008185 4.7e-16 87.4 64 68.8
MD03G1014600 Malus domestica HOM05D006358 ORTHO05D008185 8.1e-16 86.7 66 57.6
COL.COLO4_10429 Corchorus olitorius HOM05D006358 ORTHO05D008185 1.1e-15 86.3 60 61.7
arahy.Tifrunner.gnm1.ann1.TN3NK4 Arachis hypogaea HOM05D006358 ORTHO05D008185 3.1e-15 84.7 58 65.5
MD11G1015800 Malus domestica HOM05D006358 ORTHO05D008185 3.1e-15 84.7 66 56.1
VMungo0720G2736 Vigna mungo HOM05D006358 ORTHO05D008185 4.0e-15 84.3 60 60.0
Migut.D00538 Erythranthe guttata HOM05D006358 ORTHO05D008185 8.9e-15 83.2 57 64.9
Sc09g0000330 Simmondsia chinensis HOM05D006358 ORTHO05D008185 1.2e-14 82.8 56 64.3
Lalb_Chr02g0144221 Lupinus albus HOM05D006358 ORTHO05D008185 2.0e-14 82.0 63 57.1
Phvul.007G005400 Phaseolus vulgaris HOM05D006358 ORTHO05D008185 2.6e-14 81.6 60 56.7
Glyma.10G294800 Glycine max HOM05D006358 ORTHO05D008185 9.9e-14 79.7 60 55.0
THA.LOC104810430 Tarenaya hassleriana HOM05D006358 ORTHO05D008185 1.7e-13 79.0 58 58.6
Ah.06g193120 Amaranthus hybridus HOM05D000044 ORTHO05D000051 2.2e-13 78.6 65 56.9
ClCG02G023710 Citrullus lanatus HOM05D006358 ORTHO05D008185 2.2e-13 78.6 64 60.9
unitig_0.g179 Utricularia gibba HOM05D006358 ORTHO05D008185 2.9e-13 78.2 59 52.5
Lj5g0002595 Lotus japonicus HOM05D006358 ORTHO05D008185 3.7e-13 77.8 60 53.3
Aa31LG10G3410 Aethionema arabicum HOM05D006358 ORTHO05D008185 4.9e-13 77.4 59 52.5
BcaB07g33557 Brassica carinata HOM05D006358 ORTHO05D008185 8.3e-13 76.6 58 55.2
BcaC08g43281 Brassica carinata HOM05D006358 ORTHO05D008185 8.3e-13 76.6 58 55.2
A06p02670 Brassica napus HOM05D006358 ORTHO05D008185 8.3e-13 76.6 58 55.2
C06p06310 Brassica napus HOM05D006358 ORTHO05D008185 8.3e-13 76.6 58 55.2
BolC6t35740H Brassica oleracea HOM05D006358 ORTHO05D008185 8.3e-13 76.6 58 55.2
BraA06t23476Z Brassica rapa HOM05D006358 ORTHO05D008185 2.4e-12 75.1 58 53.4
Thhalv10011532m.g Eutrema salsugineum HOM05D006358 ORTHO05D008185 2.4e-12 75.1 58 53.4
Glyma.20G244500 Glycine max HOM05D006358 ORTHO05D008185 2.4e-12 75.1 60 53.3
Sp1g37840 Schrenkiella parvula HOM05D006358 ORTHO05D008185 2.4e-12 75.1 58 53.4
Ca_11387_v3 Cicer arietinum L. HOM05D006358 ORTHO05D008185 9.2e-12 73.2 60 51.7
Psat6g240320 Pisum sativum HOM05D003840 ORTHO05D004565 9.2e-12 73.2 63 49.2
AT1G51110 Arabidopsis thaliana HOM05D006358 ORTHO05D008185 1.2e-11 72.8 58 51.7
AL1G58910 Arabidopsis lyrata HOM05D006358 ORTHO05D008185 3.5e-11 71.2 58 50.0
Carub.0001s4002 Capsella rubella HOM05D006358 ORTHO05D008185 6.0e-11 70.5 58 48.3
CARHR041130 Cardamine hirsuta HOM05D006358 ORTHO05D008185 1.7e-10 68.9 58 48.3
CDE04G2070 Ceratophyllum demersum HOM05D006358 ORTHO05D008185 1.5e-09 65.9 60 50.0
Medtr1g116320 Medicago truncatula HOM05D006358 ORTHO05D008185 1.5e-09 65.9 65 47.7
TPR.G10386 Trifolium pratense HOM05D006358 ORTHO05D008185 1.9e-09 65.5 61 50.8
ATR0807G171 Amborella trichopoda HOM05D006358 ORTHO05D008185 5.2e-07 57.4 52 48.1
Lj2A674T44 Lonicera japonica HOM05D006358 ORTHO05D008185 2.6e-06 55.1 36 61.1
MELO3C014648.2 Cucumis melo HOM05D006358 ORTHO05D008185 4.4e-06 54.3 37 64.9


User provided reference genes

Program Settings