Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022093 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 7.8e-127 457.2 244 100.0
CSS0014692 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 2.2e-65 253.1 164 85.4
CSS0044305 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 1.1e-35 154.5 160 61.2
Dinv37546 Davidia involucrata HOM05D005006 ORTHO05D005903 7.8e-34 148.3 167 56.9
TAR629G3139 Trochodendron aralioides HOM05D005006 ORTHO05D005903 5.0e-33 145.6 170 51.8
Actinidia01391 Actinidia chinensis HOM05D005006 ORTHO05D005903 3.1e-30 136.3 168 50.0
Oeu061095.1 Olea europaea HOM05D005006 ORTHO05D005903 1.7e-28 130.6 171 50.3
Solyc08g082090.1 Solanum lycopersicum HOM05D005006 ORTHO05D005903 2.2e-28 130.2 152 53.3
Sopen08g030380 Solanum pennellii HOM05D005006 ORTHO05D005903 2.2e-28 130.2 152 53.3
Cc08_g15850 Coffea canephora HOM05D005006 ORTHO05D005903 1.4e-27 127.5 238 41.2
PGSC0003DMG400012296 Solanum tuberosum HOM05D005006 ORTHO05D005903 1.4e-27 127.5 151 53.0
Eucgr.D01714 Eucalyptus grandis HOM05D005006 ORTHO05D005903 5.4e-27 125.6 176 50.0
Rhsim07G0083400 Rhododendron simsii HOM05D005006 ORTHO05D005903 7.0e-27 125.2 166 49.4
QL02p031286 Quercus lobata HOM05D005006 ORTHO05D005903 4.6e-26 122.5 164 49.4
Rhsim02G0241500 Rhododendron simsii HOM05D005006 ORTHO05D005903 6.0e-26 122.1 164 52.4
CiPaw.11G123200 Carya illinoinensis HOM05D005006 ORTHO05D005903 1.7e-25 120.6 165 50.9
Sed0010968 Sechium edule HOM05D005006 ORTHO05D005903 1.7e-25 120.6 171 48.5
Haze_08652 Corylus avellana HOM05D005006 ORTHO05D005903 2.3e-25 120.2 165 51.5
CANSAT21G0143 Cannabis sativa HOM05D005006 ORTHO05D005903 3.9e-25 119.4 184 44.0
Haze_08651 Corylus avellana HOM05D005006 ORTHO05D005903 5.0e-25 119.0 165 50.9
FAN13G1208 Fragaria x ananassa HOM05D005006 ORTHO05D005903 5.0e-25 119.0 164 46.3
FAN18G0263 Fragaria x ananassa HOM05D005006 ORTHO05D005903 5.0e-25 119.0 164 46.3
FAN18G2980 Fragaria x ananassa HOM05D005006 ORTHO05D005903 5.0e-25 119.0 164 45.1
Manes.02G011900 Manihot esculenta HOM05D005006 ORTHO05D005903 5.0e-25 119.0 151 49.0
FvH4_5g04150 Fragaria vesca HOM05D005006 ORTHO05D005903 6.6e-25 118.6 164 47.0
PGR031G0908 Punica granatum HOM05D005006 ORTHO05D005903 1.5e-24 117.5 157 47.8
Cfa012825 Carpinus fangiana HOM05D005006 ORTHO05D005903 2.5e-24 116.7 158 51.3
Duzib084G0720 Durio zibethinus HOM05D005006 ORTHO05D005903 2.5e-24 116.7 156 46.2
Manes.01G045300 Manihot esculenta HOM05D005006 ORTHO05D005903 3.3e-24 116.3 174 44.3
Prupe.5G116000 Prunus persica HOM05D005006 ORTHO05D005903 3.3e-24 116.3 214 39.7
RcHm_v2.0_Chr7g0195351 Rosa chinensis HOM05D005006 ORTHO05D005903 3.3e-24 116.3 172 45.3
MELO3C016304.2 Cucumis melo HOM05D005006 ORTHO05D005903 4.3e-24 115.9 174 48.9
Hma1.2p1_0359F.1_g135340 Hydrangea macrophylla HOM05D005006 ORTHO05D005903 4.3e-24 115.9 178 51.1
ClCG07G014930 Citrullus lanatus HOM05D005006 ORTHO05D005903 5.6e-24 115.5 171 44.4
ClCG10G009270 Citrullus lanatus HOM05D005006 ORTHO05D005903 5.6e-24 115.5 171 44.4
COL.COLO4_21708 Corchorus olitorius HOM05D005006 ORTHO05D005903 5.6e-24 115.5 204 43.1
Gohir.D08G132000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 5.6e-24 115.5 153 47.1
Gorai.004G134900 Gossypium raimondii HOM05D005006 ORTHO05D005903 5.6e-24 115.5 153 47.1
Nitab4.5_0007099g0020 Nicotiana tabacum HOM05D005006 ORTHO05D005903 1.2e-23 114.4 151 51.0
CSS0015607 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 1.6e-23 114.0 134 53.0
Gohir.A08G085100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.6e-23 114.0 153 47.1
ECA240G3705 Erigeron canadensis HOM05D005006 ORTHO05D005903 3.6e-23 112.8 152 53.9
Lsat_1_v5_gn_6_11781 Lactuca sativa HOM05D005006 ORTHO05D005903 3.6e-23 112.8 171 45.0
TWI81G0332 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 3.6e-23 112.8 171 45.6
Atru.chr9.2028 Acer truncatum HOM05D005006 ORTHO05D005903 8.0e-23 111.7 163 50.3
Atru.chr9.2036 Acer truncatum HOM05D005006 ORTHO05D005903 8.0e-23 111.7 163 50.3
Thecc.03G294000 Theobroma cacao HOM05D005006 ORTHO05D005903 1.1e-22 111.3 154 50.6
ClCG01G001990 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.4e-22 110.9 155 47.1
HanXRQChr03g0085171 Helianthus annuus HOM05D005006 ORTHO05D005903 1.4e-22 110.9 147 49.7
HanXRQChr07g0191041 Helianthus annuus HOM05D005006 ORTHO05D005903 2.3e-22 110.2 164 44.5
Glyma.01G224600 Glycine max HOM05D005006 ORTHO05D005903 3.1e-22 109.8 184 44.6
MD06G1103200 Malus domestica HOM05D005006 ORTHO05D005903 3.1e-22 109.8 190 44.2
CSS0044713 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 4.0e-22 109.4 135 55.6
Potri.001G093500 Populus trichocarpa HOM05D005006 ORTHO05D005903 4.0e-22 109.4 152 48.7
SGA_v2.0_scaffold111G31421 Striga asiatica HOM05D005006 ORTHO05D005903 5.2e-22 109.0 164 42.1
Duzib068G0822 Durio zibethinus HOM05D005006 ORTHO05D005903 6.8e-22 108.6 154 45.5
Peaxi162Scf00074g01119 Petunia axillaris HOM05D005006 ORTHO05D005903 8.9e-22 108.2 131 55.0
Sed0017945 Sechium edule HOM05D005006 ORTHO05D005903 1.5e-21 107.5 164 44.5
Atru.chr2.764 Acer truncatum HOM05D005006 ORTHO05D005903 2.0e-21 107.1 160 50.0
Lsat_1_v5_gn_6_85661 Lactuca sativa HOM05D005006 ORTHO05D005903 2.6e-21 106.7 147 47.6
MELO3C005742.2 Cucumis melo HOM05D005006 ORTHO05D005903 3.4e-21 106.3 169 49.1
Glyma.11G018400 Glycine max HOM05D005006 ORTHO05D005903 3.4e-21 106.3 179 43.6
MBI07_g24340_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 3.4e-21 106.3 170 42.9
Ciclev10022492m.g Citrus clementina HOM05D005006 ORTHO05D005903 4.4e-21 105.9 189 45.5
DCAR_027715 Daucus carota HOM05D005006 ORTHO05D005903 4.4e-21 105.9 160 46.9
Dinv38852 Davidia involucrata HOM05D005006 ORTHO05D005903 4.4e-21 105.9 92 70.7
TWI15G0537 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 4.4e-21 105.9 174 40.8
Sc22g0005120 Simmondsia chinensis HOM05D005006 ORTHO05D005903 5.8e-21 105.5 172 41.3
Aqoxy5G04131 Aquilegia oxysepala HOM05D005006 ORTHO05D005903 7.5e-21 105.1 174 42.0
CARHR212760 Cardamine hirsuta HOM05D005006 ORTHO05D005903 7.5e-21 105.1 181 43.6
MD14G1122100 Malus domestica HOM05D005006 ORTHO05D005903 7.5e-21 105.1 194 43.8
Thhalv10023644m.g Eutrema salsugineum HOM05D005006 ORTHO05D005903 9.8e-21 104.8 179 41.3
ECA233G6185 Erigeron canadensis HOM05D005006 ORTHO05D005903 1.7e-20 104.0 159 45.3
Sed0013874 Sechium edule HOM05D005006 ORTHO05D005903 2.9e-20 103.2 156 42.3
AT5G41810 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 3.7e-20 102.8 184 42.9
CsaV3_5G002120 Cucumis sativus L. HOM05D005006 ORTHO05D005903 3.7e-20 102.8 176 46.6
Nn1g01823 Nelumbo nucifera HOM05D005006 ORTHO05D005903 3.7e-20 102.8 163 41.1
AL7G47430 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 4.9e-20 102.4 184 42.4
Carub.0007s3356 Capsella rubella HOM05D005006 ORTHO05D005903 4.9e-20 102.4 212 39.6
C06p20240 Brassica napus HOM05D005006 ORTHO05D005903 6.4e-20 102.1 202 36.6
BolC6t37205H Brassica oleracea HOM05D005006 ORTHO05D005903 6.4e-20 102.1 202 36.6
BcaC08g44558 Brassica carinata HOM05D005006 ORTHO05D005903 1.4e-19 100.9 184 38.0
A07p20950 Brassica napus HOM05D005006 ORTHO05D005903 2.4e-19 100.1 186 37.6
Carub.0002s0046 Capsella rubella HOM05D005006 ORTHO05D005903 2.4e-19 100.1 184 40.2
LjContig00312_ERROPOS870357g0014674 Lotus japonicus HOM05D005006 ORTHO05D005903 7.0e-19 98.6 160 43.1
Sabra01G0069400 Salix brachista HOM05D000089 ORTHO05D003403 7.0e-19 98.6 126 52.4
Sp7g00270 Schrenkiella parvula HOM05D005006 ORTHO05D005903 7.0e-19 98.6 190 38.4
CsaV3_4G006460 Cucumis sativus L. HOM05D005006 ORTHO05D005903 9.2e-19 98.2 181 42.0
BraA07t29781Z Brassica rapa HOM05D005006 ORTHO05D005903 2.1e-18 97.1 186 37.1
FAN04G1712 Fragaria x ananassa HOM05D005006 ORTHO05D005903 2.7e-18 96.7 150 42.0
FAN04G3134 Fragaria x ananassa HOM05D005006 ORTHO05D005903 2.7e-18 96.7 150 42.0
Phvul.002G296900 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 4.6e-18 95.9 196 37.8
VMungo0251G1458 Vigna mungo HOM05D005006 ORTHO05D005903 6.0e-18 95.5 203 37.9
BcaB02g07876 Brassica carinata HOM05D005006 ORTHO05D005903 7.8e-18 95.1 187 42.2
BcaC04g22629 Brassica carinata HOM05D005006 ORTHO05D005903 1.7e-17 94.0 179 44.1
CSS0001263 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 1.7e-17 94.0 135 52.6
Sp2g00420 Schrenkiella parvula HOM05D005006 ORTHO05D005903 2.3e-17 93.6 198 38.4
MSTRG.13880 Avicennia marina HOM05D005006 ORTHO05D005903 3.0e-17 93.2 169 39.1
Cpa.g.sc775.1 Carica papaya HOM05D005006 ORTHO05D005903 3.0e-17 93.2 177 41.8
Lj4g0012980 Lotus japonicus HOM05D005006 ORTHO05D005903 3.0e-17 93.2 191 42.4
AUR62010816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 3.9e-17 92.8 199 39.7
Glyma.05G215700 Glycine max HOM05D005006 ORTHO05D005903 3.9e-17 92.8 175 40.6
Psat0s4474g0040 Pisum sativum HOM05D005006 ORTHO05D005903 5.1e-17 92.4 175 38.3
A09p14260 Brassica napus HOM05D005006 ORTHO05D005903 6.6e-17 92.0 179 44.1
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 8.6e-17 91.7 176 38.1
THA.LOC104809339 Tarenaya hassleriana HOM05D005006 ORTHO05D005903 1.1e-16 91.3 190 41.1
AL2G10550 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 1.5e-16 90.9 186 44.1
Glyma.08G021800 Glycine max HOM05D005006 ORTHO05D005903 1.5e-16 90.9 172 40.1
TPR.G6668 Trifolium pratense HOM05D005006 ORTHO05D005903 1.5e-16 90.9 182 42.3
BraA09t37075Z Brassica rapa HOM05D005006 ORTHO05D005903 1.9e-16 90.5 177 43.5
C09p17190 Brassica napus HOM05D005006 ORTHO05D005903 4.3e-16 89.4 178 43.3
BolC9t54617H Brassica oleracea HOM05D005006 ORTHO05D005903 4.3e-16 89.4 178 43.3
Medtr5g009490 Medicago truncatula HOM05D005006 ORTHO05D005903 5.6e-16 89.0 197 39.1
AT1G64340 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 1.1e-14 84.7 168 44.0
BcaB07g31512 Brassica carinata HOM05D005006 ORTHO05D005903 1.1e-14 84.7 178 43.3
Manes.02G012001 Manihot esculenta HOM05D005006 ORTHO05D005903 1.8e-14 84.0 151 39.7
Peaxi162Scf00117g00128 Petunia axillaris HOM05D005006 ORTHO05D005903 3.1e-14 83.2 148 41.9
Aa31LG9G320 Aethionema arabicum HOM05D005006 ORTHO05D005903 6.8e-14 82.0 166 37.3
ClCG11G005390 Citrullus lanatus HOM05D000189 ORTHO05D006628 6.8e-14 82.0 138 41.3
Psat7g027080 Pisum sativum HOM05D005006 ORTHO05D005903 4.4e-13 79.3 167 38.3
Medtr8g099340 Medicago truncatula HOM05D005006 ORTHO05D005903 5.8e-13 79.0 180 37.8
Lalb_Chr05g0224201 Lupinus albus HOM05D005006 ORTHO05D005903 7.5e-13 78.6 173 38.7
Phvul.002G163200 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 7.5e-13 78.6 106 44.3
MBI06_g32753_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 9.9e-13 78.2 167 40.1
Ca_17490_v3 Cicer arietinum L. HOM05D005006 ORTHO05D005903 8.3e-12 75.1 172 36.6
Rhsim02G0241700 Rhododendron simsii HOM05D000089 ORTHO05D003403 1.6e-10 70.9 157 36.9
Sc01g0010170 Simmondsia chinensis HOM05D005006 ORTHO05D005903 2.7e-10 70.1 164 40.2
Gohir.A11G024100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 3.5e-10 69.7 96 43.8
ATR0589G111 Amborella trichopoda HOM05D005006 ORTHO05D005903 4.6e-10 69.3 97 42.3
PGR042G1559 Punica granatum HOM05D005006 ORTHO05D005903 6.0e-10 68.9 148 37.2
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 5.1e-09 65.9 78 50.0
ClCG01G011510 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.9e-08 63.9 97 43.3
ClCG05G010200 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.9e-08 63.9 97 43.3
ClCG07G009600 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.9e-08 63.9 97 43.3
PSO729G0067 Papaver somniferum HOM05D005006 ORTHO05D005903 7.3e-08 62.0 186 38.7
PSO724G0350 Papaver somniferum HOM05D005006 ORTHO05D005903 9.5e-08 61.6 190 33.2
SGA_v2.0_scaffold173G39083 Striga asiatica HOM05D005006 ORTHO05D005903 2.1e-07 60.5 71 47.9
Nn3g19068 Nelumbo nucifera HOM05D005006 ORTHO05D005903 4.7e-07 59.3 84 46.4
SalBow1G2562 Salvia bowleyana HOM05D005006 ORTHO05D005903 8.1e-07 58.5 94 40.4
SalBow1G1740 Salvia bowleyana HOM05D005006 ORTHO05D005903 1.1e-06 58.2 94 40.4
Gohir.D12G236200 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.4e-06 57.8 97 40.2
Gorai.008G253000 Gossypium raimondii HOM05D005006 ORTHO05D005903 1.4e-06 57.8 97 40.2
Zm00001eb382950 Zea mays HOM05D005006 ORTHO05D005903 1.4e-06 57.8 144 36.8
PSO724G0798 Papaver somniferum HOM05D005006 ORTHO05D005903 2.4e-06 57.0 170 33.5
PSO724G1125 Papaver somniferum HOM05D005006 ORTHO05D005903 2.4e-06 57.0 170 33.5
Gohir.A12G235100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 3.1e-06 56.6 132 37.1
Os06g0525200 Oryza sativa ssp. japonica HOM05D005006 ORTHO05D005903 8.9e-06 55.1 149 38.3


User provided reference genes

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