Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022084 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 2.7e-52 208.4 106 100.0
CSS0033637 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 4.0e-51 204.5 106 98.1
Actinidia28901 Actinidia chinensis HOM05D005747 ORTHO05D007159 8.5e-46 186.8 106 89.6
Actinidia08777 Actinidia chinensis HOM05D005747 ORTHO05D007159 1.1e-45 186.4 106 89.6
CSS0033757 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 1.6e-44 182.6 106 87.7
Hma1.2p1_0205F.1_g087080 Hydrangea macrophylla HOM05D005747 ORTHO05D007159 1.0e-43 179.9 104 85.6
vmacro07288 Vaccinium macrocarpon HOM05D005747 ORTHO05D007159 1.4e-43 179.5 106 84.9
Cfa020071 Carpinus fangiana HOM05D005747 ORTHO05D007159 1.8e-43 179.1 105 81.9
Dinv37311 Davidia involucrata HOM05D005747 ORTHO05D007159 5.2e-43 177.6 106 84.9
Rhsim03G0092400 Rhododendron simsii HOM05D005747 ORTHO05D007159 5.2e-43 177.6 106 84.0
Migut.L01698 Erythranthe guttata HOM05D005747 ORTHO05D007159 6.8e-43 177.2 106 82.1
Haze_20552 Corylus avellana HOM05D005747 ORTHO05D007159 2.6e-42 175.3 105 81.0
MSTRG.19175 Avicennia marina HOM05D005747 ORTHO05D007159 1.3e-41 172.9 106 79.2
Thecc.05G065200 Theobroma cacao HOM05D005747 ORTHO05D007159 1.3e-41 172.9 105 80.0
arahy.Tifrunner.gnm1.ann1.548B55 Arachis hypogaea HOM05D005747 ORTHO05D007159 2.2e-41 172.2 105 79.0
Cc06_g04180 Coffea canephora HOM05D005747 ORTHO05D007159 2.2e-41 172.2 106 79.2
Manes.08G009800 Manihot esculenta HOM05D005747 ORTHO05D007159 2.2e-41 172.2 105 79.0
arahy.Tifrunner.gnm1.ann1.47U1LD Arachis hypogaea HOM05D005747 ORTHO05D007159 2.8e-41 171.8 105 79.0
arahy.Tifrunner.gnm1.ann1.GC88CS Arachis hypogaea HOM05D005747 ORTHO05D007159 2.8e-41 171.8 105 78.1
Haze_20124 Corylus avellana HOM05D005747 ORTHO05D007159 3.7e-41 171.4 105 78.1
Atru.chr8.1820 Acer truncatum HOM05D005747 ORTHO05D007159 4.9e-41 171.0 105 79.0
arahy.Tifrunner.gnm1.ann1.W5J3RK Arachis hypogaea HOM05D005747 ORTHO05D007159 8.3e-41 170.2 105 78.1
PGR004G0006 Punica granatum HOM05D005747 ORTHO05D007159 1.4e-40 169.5 105 77.1
QL07p043606 Quercus lobata HOM05D005747 ORTHO05D007159 2.4e-40 168.7 105 79.0
SGA_v2.0_scaffold75G24844 Striga asiatica HOM05D005747 ORTHO05D007159 2.4e-40 168.7 103 80.6
Nn7g38309 Nelumbo nucifera HOM05D005747 ORTHO05D007159 5.4e-40 167.5 105 77.1
Duzib128G1360 Durio zibethinus HOM05D005747 ORTHO05D007159 7.0e-40 167.2 105 78.1
Lj5g0010104 Lotus japonicus HOM05D005747 ORTHO05D007159 7.0e-40 167.2 104 77.9
Glyma.13G143500 Glycine max HOM05D005747 ORTHO05D007159 1.2e-39 166.4 105 77.1
Eucgr.A01688 Eucalyptus grandis HOM05D005747 ORTHO05D007159 1.6e-39 166.0 105 75.2
Ciclev10013173m.g Citrus clementina HOM05D005747 ORTHO05D007159 2.7e-39 165.2 105 76.2
Duzib093G2107 Durio zibethinus HOM05D005747 ORTHO05D007159 2.7e-39 165.2 105 76.2
PSO063G6473 Papaver somniferum HOM05D005747 ORTHO05D007159 3.5e-39 164.9 105 73.3
PSO339G2391 Papaver somniferum HOM05D005747 ORTHO05D007159 3.5e-39 164.9 105 73.3
THA.LOC104826911 Tarenaya hassleriana HOM05D005747 ORTHO05D007159 4.5e-39 164.5 105 76.2
TWI74G1168 Tripterygium wilfordii HOM05D005747 ORTHO05D007159 4.5e-39 164.5 105 78.1
Thhalv10015093m.g Eutrema salsugineum HOM05D005747 ORTHO05D007159 5.9e-39 164.1 103 77.7
Glyma.10G057000 Glycine max HOM05D005747 ORTHO05D007159 5.9e-39 164.1 105 76.2
Peaxi162Scf00701g00029 Petunia axillaris HOM05D005747 ORTHO05D007159 5.9e-39 164.1 106 74.5
Prupe.6G232700 Prunus persica HOM05D005747 ORTHO05D007159 5.9e-39 164.1 105 73.3
GSVIVG01025728001 Vitis vinifera HOM05D005747 ORTHO05D007159 5.9e-39 164.1 105 75.2
Lalb_Chr02g0155891 Lupinus albus HOM05D005747 ORTHO05D007159 7.8e-39 163.7 104 74.0
SalBow5G0179 Salvia bowleyana HOM05D005747 ORTHO05D007159 7.8e-39 163.7 106 74.5
SalBow5G1412 Salvia bowleyana HOM05D005747 ORTHO05D007159 7.8e-39 163.7 106 74.5
Aqoxy1G01163 Aquilegia oxysepala HOM05D005747 ORTHO05D007159 1.3e-38 162.9 105 73.3
Manes.09G066900 Manihot esculenta HOM05D005747 ORTHO05D007159 3.8e-38 161.4 104 74.0
TAR369G0407 Trochodendron aralioides HOM05D005747 ORTHO05D007159 3.8e-38 161.4 105 74.3
Solyc09g008140.3 Solanum lycopersicum HOM05D005747 ORTHO05D007159 5.0e-38 161.0 106 73.6
Sopen09g002940 Solanum pennellii HOM05D005747 ORTHO05D007159 5.0e-38 161.0 106 73.6
Glyma.19G183500 Glycine max HOM05D005747 ORTHO05D007159 6.6e-38 160.6 105 72.4
CANSAT80G0760 Cannabis sativa HOM05D005747 ORTHO05D007159 1.5e-37 159.5 105 73.3
Gohir.D09G143100 Gossypium hirsutum HOM05D005747 ORTHO05D007159 1.5e-37 159.5 105 77.1
Gorai.006G164600 Gossypium raimondii HOM05D005747 ORTHO05D007159 1.5e-37 159.5 105 77.1
EL10Ac1g00026 Beta vulgaris HOM05D005747 ORTHO05D007159 1.9e-37 159.1 105 76.2
TWI77G0618 Tripterygium wilfordii HOM05D005747 ORTHO05D007159 1.9e-37 159.1 105 77.1
Ca_11494_v3 Cicer arietinum L. HOM05D005747 ORTHO05D007159 2.5e-37 158.7 105 75.2
MD04G1094200 Malus domestica HOM05D005747 ORTHO05D007159 2.5e-37 158.7 105 71.4
Potri.006G125300 Populus trichocarpa HOM05D005747 ORTHO05D007159 2.5e-37 158.7 103 74.8
VMungo1383G0680 Vigna mungo HOM05D005747 ORTHO05D007159 2.5e-37 158.7 105 72.4
CAN.G900.40 Capsicum annuum HOM05D005747 ORTHO05D007159 3.3e-37 158.3 106 71.7
MELO3C009353.2 Cucumis melo HOM05D005747 ORTHO05D007159 3.3e-37 158.3 105 73.3
Phvul.001G178800 Phaseolus vulgaris HOM05D005747 ORTHO05D007159 3.3e-37 158.3 105 72.4
TAR633G0139 Trochodendron aralioides HOM05D005747 ORTHO05D007159 3.3e-37 158.3 105 73.3
CARHR210000 Cardamine hirsuta HOM05D005747 ORTHO05D007159 4.3e-37 157.9 103 75.7
CsaV3_3G035950 Cucumis sativus L. HOM05D005747 ORTHO05D007159 4.3e-37 157.9 105 73.3
FvH4_6g16280 Fragaria vesca HOM05D005747 ORTHO05D007159 5.6e-37 157.5 103 70.9
FAN14G5754 Fragaria x ananassa HOM05D005747 ORTHO05D007159 5.6e-37 157.5 103 70.9
RcHm_v2.0_Chr3g0470141 Rosa chinensis HOM05D005747 ORTHO05D007159 5.6e-37 157.5 103 71.8
TPR.G25697 Trifolium pratense HOM05D005747 ORTHO05D007159 5.6e-37 157.5 101 75.2
FAN05G2010 Fragaria x ananassa HOM05D005747 ORTHO05D007159 7.3e-37 157.1 103 70.9
Gohir.A09G147500 Gossypium hirsutum HOM05D005747 ORTHO05D007159 7.3e-37 157.1 105 76.2
MD12G1113800 Malus domestica HOM05D005747 ORTHO05D007159 7.3e-37 157.1 105 70.5
Zm00001eb028740 Zea mays HOM05D005747 ORTHO05D007159 7.3e-37 157.1 105 70.5
Aa31LG3G2310 Aethionema arabicum HOM05D005747 ORTHO05D007159 9.5e-37 156.8 105 72.4
Psat0s2933g0080 Pisum sativum HOM05D005747 ORTHO05D007159 9.5e-37 156.8 105 71.4
FAN02G1695 Fragaria x ananassa HOM05D005747 ORTHO05D007159 1.2e-36 156.4 103 69.9
Zm00001eb136890 Zea mays HOM05D005747 ORTHO05D007159 1.2e-36 156.4 104 71.2
ClCG10G020160 Citrullus lanatus HOM05D005747 ORTHO05D007159 1.6e-36 156.0 105 72.4
FAN09G1333 Fragaria x ananassa HOM05D005747 ORTHO05D007159 1.6e-36 156.0 103 70.9
Psat6g073040 Pisum sativum HOM05D005747 ORTHO05D007159 1.6e-36 156.0 105 72.4
Sc02g0001670 Simmondsia chinensis HOM05D005747 ORTHO05D007159 1.6e-36 156.0 105 72.4
AL6G12680 Arabidopsis lyrata HOM05D005747 ORTHO05D007159 2.1e-36 155.6 103 73.8
C02p00970 Brassica napus HOM05D001005 ORTHO05D000836 2.1e-36 155.6 103 73.8
Carub.0006s0216 Capsella rubella HOM05D005747 ORTHO05D007159 2.8e-36 155.2 103 73.8
Lalb_Chr20g0112621 Lupinus albus HOM05D005747 ORTHO05D007159 2.8e-36 155.2 105 70.5
Medtr1g063370 Medicago truncatula HOM05D005747 ORTHO05D007159 2.8e-36 155.2 105 70.5
Sp6g39390 Schrenkiella parvula HOM05D005747 ORTHO05D007159 2.8e-36 155.2 103 73.8
Medtr7g101880 Medicago truncatula HOM05D005747 ORTHO05D007159 3.6e-36 154.8 99 74.7
Os12g0566400 Oryza sativa ssp. japonica HOM05D005747 ORTHO05D007159 4.7e-36 154.5 105 68.6
TPR.G9369 Trifolium pratense HOM05D005747 ORTHO05D007159 4.7e-36 154.5 105 72.4
BcaC03g13014 Brassica carinata HOM05D005747 ORTHO05D007159 6.1e-36 154.1 103 72.8
AT5G03345 Arabidopsis thaliana HOM05D005747 ORTHO05D007159 1.4e-35 152.9 103 72.8
Sed0019850 Sechium edule HOM05D005747 ORTHO05D007159 4.0e-35 151.4 105 69.5
unitig_578.g16384 Utricularia gibba HOM05D005747 ORTHO05D007159 6.8e-35 150.6 99 72.7
Nitab4.5_0002632g0020 Nicotiana tabacum HOM05D005747 ORTHO05D007159 8.9e-35 150.2 106 69.8
Nitab4.5_0000578g0140 Nicotiana tabacum HOM05D005747 ORTHO05D007159 1.5e-34 149.4 106 68.9
Phvul.007G149300 Phaseolus vulgaris HOM05D005747 ORTHO05D007159 4.4e-34 147.9 104 72.1
Potri.016G091900 Populus trichocarpa HOM05D005747 ORTHO05D007159 7.5e-34 147.1 103 69.9
Ah.05g172440 Amaranthus hybridus HOM05D005747 ORTHO05D007159 6.4e-33 144.1 105 69.5
Lsat_1_v5_gn_6_25181 Lactuca sativa HOM05D005747 ORTHO05D007159 1.1e-32 143.3 104 70.2
ECA233G4120 Erigeron canadensis HOM05D005747 ORTHO05D007159 5.4e-32 141.0 104 66.3
PGSC0003DMG400003860 Solanum tuberosum HOM05D005747 ORTHO05D007159 1.6e-31 139.4 134 56.0
HPP92_009808 Vanilla planifolia HOM05D005747 ORTHO05D007159 4.6e-31 137.9 92 73.9
HanXRQChr13g0401071 Helianthus annuus HOM05D005747 ORTHO05D007159 7.8e-31 137.1 106 63.2
Gorai.006G061900 Gossypium raimondii HOM05D005747 ORTHO05D007159 8.6e-30 133.7 107 67.3
Hma1.2p1_0205F.1_g087090 Hydrangea macrophylla HOM05D005747 ORTHO05D007159 2.5e-29 132.1 76 88.2
Glyma.03G182900 Glycine max HOM05D005747 ORTHO05D007159 5.6e-29 131.0 134 53.7
CDE06G0870 Ceratophyllum demersum HOM05D005747 ORTHO05D007159 8.0e-28 127.1 94 63.8
HanXRQChr02g0051611 Helianthus annuus HOM05D005747 ORTHO05D007159 1.8e-27 125.9 106 57.5
Lj2A1109T71 Lonicera japonica HOM05D005747 ORTHO05D007159 4.0e-27 124.8 91 68.1
Mapoly0011s0153 Marchantia polymorpha HOM05D005747 ORTHO05D007159 6.8e-27 124.0 103 57.3
Oeu053677.1 Olea europaea HOM05D005747 ORTHO05D007159 6.8e-27 124.0 78 79.5
DCAR_020822 Daucus carota HOM05D005747 ORTHO05D007159 1.2e-26 123.2 76 78.9
SEGI_15519 Sequoiadendron giganteum HOM05D005747 ORTHO05D007159 1.2e-26 123.2 100 58.0
Hund20347 Selenicereus undatus HOM05D005747 ORTHO05D007159 7.5e-26 120.6 77 76.6
SMO137G0056 Selaginella moellendorffii HOM05D005747 ORTHO05D007159 2.2e-25 119.0 100 55.0
CSS0043170 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 3.7e-25 118.2 69 88.4
CSS0041044 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 3.2e-24 115.2 69 87.0
Oeu045224.1 Olea europaea HOM05D005747 ORTHO05D007159 7.0e-24 114.0 86 68.6
CiPaw.09G219400 Carya illinoinensis HOM05D005747 ORTHO05D007159 1.2e-23 113.2 104 59.6
Pp3c6_8930 Physcomitrium patens HOM05D005747 ORTHO05D007159 1.2e-23 113.2 91 58.2
Pp3c5_16080 Physcomitrium patens HOM05D005747 ORTHO05D007159 3.5e-23 111.7 92 59.8
ATR0104G002 Amborella trichopoda HOM05D005747 ORTHO05D007159 3.0e-22 108.6 79 64.6
AagrBONN_evm.TU.Sc2ySwM_362.1648 Anthoceros agrestis HOM05D005747 ORTHO05D007159 5.0e-22 107.8 90 54.4
AUR62004704 Chenopodium quinoa HOM05D005747 ORTHO05D007159 1.2e-20 103.2 105 55.2
AUR62023620 Chenopodium quinoa HOM05D005747 ORTHO05D007159 1.6e-20 102.8 113 54.9
Sabra16G0097500 Salix brachista HOM05D005747 ORTHO05D007159 1.8e-19 99.4 74 66.2
Sed0003931 Sechium edule HOM05D005747 ORTHO05D007159 1.3e-17 93.2 66 66.7
Dinv35784 Davidia involucrata HOM05D005747 ORTHO05D007159 3.7e-17 91.7 50 92.0
Lalb_Chr02g0156001 Lupinus albus HOM05D005747 ORTHO05D007159 1.6e-12 76.3 78 56.4
MCO03G507 Micromonas commoda HOM05D005747 ORTHO05D007159 2.0e-10 69.3 87 41.4
COL.COLO4_26972 Corchorus olitorius HOM05D005747 ORTHO05D007159 1.3e-09 66.6 45 68.9
Lalb_Chr25g0289001 Lupinus albus HOM05D005747 ORTHO05D007159 1.3e-09 66.6 43 72.1
Os11g0568633 Oryza sativa ssp. japonica HOM05D005747 ORTHO05D007159 1.6e-07 59.7 42 64.3
Cre03.g183050 Chlamydomonas reinhardtii HOM05D005747 ORTHO05D007159 2.1e-07 59.3 97 29.9
unitig_8.g4716 Utricularia gibba HOM05D000027 ORTHO05D002055 6.6e-06 54.3 98 37.8


User provided reference genes

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