Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022075 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 9.1e-71 270.0 126 100.0
Actinidia07885 Actinidia chinensis HOM05D004304 ORTHO05D005229 2.9e-69 265.0 126 96.8
vmacro09397 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 5.0e-69 264.2 126 96.0
AUR62017517 Chenopodium quinoa HOM05D004304 ORTHO05D005229 1.1e-68 263.1 126 96.8
Actinidia21445 Actinidia chinensis HOM05D004304 ORTHO05D005229 1.5e-68 262.7 126 97.6
Manes.12G061000 Manihot esculenta HOM05D004304 ORTHO05D005229 2.5e-68 261.9 126 96.0
Actinidia09779 Actinidia chinensis HOM05D004304 ORTHO05D005229 9.4e-68 260.0 126 95.2
CAN.G854.8 Capsicum annuum HOM05D004304 ORTHO05D005229 1.2e-67 259.6 126 95.2
Ciclev10017178m.g Citrus clementina HOM05D004304 ORTHO05D005229 1.2e-67 259.6 126 95.2
Dinv07865 Davidia involucrata HOM05D004304 ORTHO05D005229 1.2e-67 259.6 126 95.2
Thecc.01G191600 Theobroma cacao HOM05D004304 ORTHO05D005229 1.2e-67 259.6 126 95.2
Sc20g0003970 Simmondsia chinensis HOM05D004304 ORTHO05D005229 1.6e-67 259.2 124 96.8
GSVIVG01030050001 Vitis vinifera HOM05D004304 ORTHO05D005229 1.6e-67 259.2 126 95.2
CSS0042456 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 2.1e-67 258.8 126 96.0
Nitab4.5_0000441g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 2.1e-67 258.8 126 93.7
Cc00_g07360 Coffea canephora HOM05D004304 ORTHO05D005229 2.7e-67 258.5 126 95.2
Prupe.3G200700 Prunus persica HOM05D004304 ORTHO05D005229 2.7e-67 258.5 126 95.2
Nitab4.5_0004642g0020 Nicotiana tabacum HOM05D004304 ORTHO05D005229 4.7e-67 257.7 126 93.7
THA.LOC104819042 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 4.7e-67 257.7 126 95.2
CANSAT64G1042 Cannabis sativa HOM05D004304 ORTHO05D005229 6.1e-67 257.3 126 94.4
Duzib133G1241 Durio zibethinus HOM05D004304 ORTHO05D005229 6.1e-67 257.3 126 94.4
FvH4_6g40920 Fragaria vesca HOM05D004304 ORTHO05D005229 6.1e-67 257.3 126 93.7
FAN05G0096 Fragaria x ananassa HOM05D004304 ORTHO05D005229 6.1e-67 257.3 126 93.7
RcHm_v2.0_Chr2g0156501 Rosa chinensis HOM05D004304 ORTHO05D005229 6.1e-67 257.3 126 93.7
Sopen07g024320 Solanum pennellii HOM05D004304 ORTHO05D005229 6.1e-67 257.3 126 93.7
PGSC0003DMG400006152 Solanum tuberosum HOM05D004304 ORTHO05D005229 6.1e-67 257.3 126 93.7
ClCG02G009350 Citrullus lanatus HOM05D004304 ORTHO05D005229 8.0e-67 256.9 126 94.4
Gohir.A11G149700 Gossypium hirsutum HOM05D004304 ORTHO05D005229 8.0e-67 256.9 126 93.7
Gohir.D11G156380 Gossypium hirsutum HOM05D004304 ORTHO05D005229 8.0e-67 256.9 126 93.7
Gorai.007G166800 Gossypium raimondii HOM05D004304 ORTHO05D005229 8.0e-67 256.9 126 93.7
Hma1.2p1_0133F.1_g061310 Hydrangea macrophylla HOM05D004304 ORTHO05D005229 8.0e-67 256.9 126 94.4
Sed0000663 Sechium edule HOM05D004304 ORTHO05D005229 8.0e-67 256.9 126 94.4
Atru.chr6.3369 Acer truncatum HOM05D004304 ORTHO05D005229 1.0e-66 256.5 126 94.4
HanXRQChr03g0075261 Helianthus annuus HOM05D004304 ORTHO05D005229 1.0e-66 256.5 126 92.9
MD17G1113700 Malus domestica HOM05D004304 ORTHO05D005229 1.0e-66 256.5 126 94.4
MD09G1123200 Malus domestica HOM05D004304 ORTHO05D005229 1.4e-66 256.1 126 94.4
vmacro12102 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 1.4e-66 256.1 126 92.9
FAN02G3860 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.8e-66 255.8 126 92.9
FAN09G2975 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.8e-66 255.8 126 92.9
Potri.014G165300 Populus trichocarpa HOM05D004304 ORTHO05D005229 1.8e-66 255.8 126 92.9
PGR042G2803 Punica granatum HOM05D004304 ORTHO05D005229 1.8e-66 255.8 126 92.9
CsaV3_6G009500 Cucumis sativus L. HOM05D004304 ORTHO05D005229 2.3e-66 255.4 126 93.7
THA.LOC104826653 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 2.3e-66 255.4 126 94.4
Duzib138G0739 Durio zibethinus HOM05D004304 ORTHO05D005229 4.0e-66 254.6 124 94.4
Duzib138G1664 Durio zibethinus HOM05D004304 ORTHO05D005229 4.0e-66 254.6 124 94.4
TWI18G0278 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 4.0e-66 254.6 126 94.4
DCAR_019709 Daucus carota HOM05D004304 ORTHO05D005229 5.2e-66 254.2 124 93.5
FAN14G5814 Fragaria x ananassa HOM05D004304 ORTHO05D005229 5.2e-66 254.2 126 92.9
Solyc12g006160.2 Solanum lycopersicum HOM05D004304 ORTHO05D005229 6.8e-66 253.8 126 92.1
Sopen12g002110 Solanum pennellii HOM05D004304 ORTHO05D005229 6.8e-66 253.8 126 92.1
CAN.G294.16 Capsicum annuum HOM05D004304 ORTHO05D005229 8.8e-66 253.4 126 92.1
MELO3C025975.2 Cucumis melo HOM05D004304 ORTHO05D005229 8.8e-66 253.4 126 92.9
PGSC0003DMG400028823 Solanum tuberosum HOM05D004304 ORTHO05D005229 8.8e-66 253.4 126 91.3
TWI75G1244 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 8.8e-66 253.4 126 93.7
Aqoxy1G04225 Aquilegia oxysepala HOM05D004304 ORTHO05D005229 1.2e-65 253.1 126 92.1
MSTRG.6645 Avicennia marina HOM05D004304 ORTHO05D005229 1.2e-65 253.1 124 94.4
CiPaw.03G279300 Carya illinoinensis HOM05D004304 ORTHO05D005229 1.2e-65 253.1 126 93.7
Gohir.A07G087600 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.2e-65 253.1 126 92.1
Gohir.D07G092500 Gossypium hirsutum HOM05D004304 ORTHO05D005229 2.6e-65 251.9 126 92.1
Gorai.001G099100 Gossypium raimondii HOM05D004304 ORTHO05D005229 2.6e-65 251.9 126 92.1
MSTRG.14924 Avicennia marina HOM05D004304 ORTHO05D005229 3.4e-65 251.5 123 92.7
Eucgr.A01049 Eucalyptus grandis HOM05D004304 ORTHO05D005229 3.4e-65 251.5 126 92.1
Nn1g07447 Nelumbo nucifera HOM05D004304 ORTHO05D005229 3.4e-65 251.5 126 91.3
Nitab4.5_0001229g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 7.5e-65 250.4 126 91.3
Nitab4.5_0005511g0040 Nicotiana tabacum HOM05D004304 ORTHO05D005229 7.5e-65 250.4 126 91.3
PGR142G2829 Punica granatum HOM05D004304 ORTHO05D005229 7.5e-65 250.4 126 92.1
TAR624G1210 Trochodendron aralioides HOM05D004304 ORTHO05D005229 1.7e-64 249.2 126 90.5
Os12g0514600 Oryza sativa ssp. japonica HOM05D004304 ORTHO05D005229 2.2e-64 248.8 126 90.5
TAR627G0777 Trochodendron aralioides HOM05D004304 ORTHO05D005229 2.2e-64 248.8 126 90.5
FvH4_5g30980 Fragaria vesca HOM05D004304 ORTHO05D005229 2.8e-64 248.4 125 91.2
FAN13G0518 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.8e-64 248.4 125 91.2
FAN18G2534 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.8e-64 248.4 125 91.2
Glyma.02G305100 Glycine max HOM05D004304 ORTHO05D005229 2.8e-64 248.4 126 91.3
Medtr5g097240 Medicago truncatula HOM05D004304 ORTHO05D005229 2.8e-64 248.4 126 91.3
Phvul.008G284800 Phaseolus vulgaris HOM05D004304 ORTHO05D005229 2.8e-64 248.4 126 91.3
TPR.G1269 Trifolium pratense HOM05D004304 ORTHO05D005229 4.9e-64 247.7 126 90.5
FAN08G1359 Fragaria x ananassa HOM05D004304 ORTHO05D005229 8.3e-64 246.9 125 90.4
Glyma.14G008300 Glycine max HOM05D004304 ORTHO05D005229 1.4e-63 246.1 126 90.5
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 3.1e-63 245.0 125 88.8
RcHm_v2.0_Chr7g0226381 Rosa chinensis HOM05D004304 ORTHO05D005229 3.1e-63 245.0 126 89.7
Migut.M00031 Erythranthe guttata HOM05D004304 ORTHO05D005229 4.1e-63 244.6 124 92.7
LjContig00081g0006376 Lotus japonicus HOM05D004304 ORTHO05D005229 4.1e-63 244.6 126 88.9
PSO302G0206 Papaver somniferum HOM05D004304 ORTHO05D005229 5.4e-63 244.2 126 87.3
Gohir.D07G171200 Gossypium hirsutum HOM05D004304 ORTHO05D005229 7.0e-63 243.8 124 89.5
Gorai.001G191600 Gossypium raimondii HOM05D004304 ORTHO05D005229 7.0e-63 243.8 124 89.5
PSO210G6619 Papaver somniferum HOM05D004304 ORTHO05D005229 7.0e-63 243.8 126 86.5
arahy.Tifrunner.gnm1.ann1.40Z2MJ Arachis hypogaea HOM05D004304 ORTHO05D005229 9.1e-63 243.4 126 88.9
arahy.Tifrunner.gnm1.ann1.F2KZWM Arachis hypogaea HOM05D004304 ORTHO05D005229 9.1e-63 243.4 126 88.9
CARHR082470 Cardamine hirsuta HOM05D004304 ORTHO05D005229 9.1e-63 243.4 124 91.1
Thhalv10021767m.g Eutrema salsugineum HOM05D004304 ORTHO05D005229 9.1e-63 243.4 124 91.1
Gohir.A07G170000 Gossypium hirsutum HOM05D004304 ORTHO05D005229 9.1e-63 243.4 124 89.5
Sp3g06690 Schrenkiella parvula HOM05D004304 ORTHO05D005229 9.1e-63 243.4 124 91.1
Zm00001eb137890 Zea mays HOM05D004304 ORTHO05D005229 9.1e-63 243.4 126 87.3
ATR1149G091 Amborella trichopoda HOM05D004304 ORTHO05D005229 1.2e-62 243.0 126 88.1
Rhsim04G0038800 Rhododendron simsii HOM05D004304 ORTHO05D005229 1.2e-62 243.0 171 71.3
AL3G19120 Arabidopsis lyrata HOM05D004304 ORTHO05D005229 3.5e-62 241.5 124 90.3
AT3G07760 Arabidopsis thaliana HOM05D004304 ORTHO05D005229 3.5e-62 241.5 124 90.3
Lalb_Chr10g0107601 Lupinus albus HOM05D004304 ORTHO05D005229 3.5e-62 241.5 126 88.1
Zm00001eb264410 Zea mays HOM05D004304 ORTHO05D005229 5.9e-62 240.7 126 86.5
Carub.0003s0734 Capsella rubella HOM05D004304 ORTHO05D005229 1.0e-61 240.0 124 89.5
CiPaw.04G196300 Carya illinoinensis HOM05D004304 ORTHO05D005229 1.0e-61 240.0 124 87.9
Aa31LG5G18330 Aethionema arabicum HOM05D004304 ORTHO05D005229 1.3e-61 239.6 151 77.5
BcaC05g29569 Brassica carinata HOM05D004304 ORTHO05D005229 1.3e-61 239.6 124 89.5
A05p40460 Brassica napus HOM05D004304 ORTHO05D005229 1.3e-61 239.6 124 89.5
C05p59560 Brassica napus HOM05D004304 ORTHO05D005229 1.3e-61 239.6 124 89.5
BolC5t34611H Brassica oleracea HOM05D004304 ORTHO05D005229 1.3e-61 239.6 124 89.5
BraA05t22779Z Brassica rapa HOM05D004304 ORTHO05D005229 1.3e-61 239.6 124 89.5
Lalb_Chr04g0247321 Lupinus albus HOM05D004304 ORTHO05D005229 1.3e-61 239.6 126 87.3
Lalb_Chr04g0247511 Lupinus albus HOM05D004304 ORTHO05D005229 1.3e-61 239.6 126 87.3
SGA_v2.0_scaffold181G39677 Striga asiatica HOM05D004304 ORTHO05D005229 1.3e-61 239.6 124 90.3
HPP92_009568 Vanilla planifolia HOM05D004304 ORTHO05D005229 2.3e-61 238.8 125 87.2
ECA240G0131 Erigeron canadensis HOM05D001343 ORTHO05D002008 1.1e-60 236.5 117 91.5
BcaB03g14683 Brassica carinata HOM05D004304 ORTHO05D005229 1.9e-60 235.7 123 88.6
BcaC09g47944 Brassica carinata HOM05D004304 ORTHO05D005229 1.9e-60 235.7 121 90.9
TWI36G1037 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 1.9e-60 235.7 157 74.5
BcaB04g21271 Brassica carinata HOM05D004304 ORTHO05D005229 3.3e-60 235.0 119 92.4
BolC1t05535H Brassica oleracea HOM05D004304 ORTHO05D005229 3.3e-60 235.0 119 92.4
BraA03t12719Z Brassica rapa HOM05D004304 ORTHO05D005229 3.3e-60 235.0 124 87.9
Zm00001eb166190 Zea mays HOM05D004304 ORTHO05D005229 3.3e-60 235.0 124 85.5
A03p35420 Brassica napus HOM05D004304 ORTHO05D005229 4.2e-60 234.6 124 87.9
BraA01t04365Z Brassica rapa HOM05D004304 ORTHO05D005229 4.2e-60 234.6 119 91.6
HanXRQChr10g0306431 Helianthus annuus HOM05D004304 ORTHO05D005229 9.5e-60 233.4 124 87.1
SGA_v2.0_scaffold73G24513 Striga asiatica HOM05D004304 ORTHO05D005229 8.0e-59 230.3 131 83.2
CDE07G1815 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 1.8e-58 229.2 126 82.5
CDE04G0517 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 6.8e-58 227.3 126 81.0
SEGI_33416 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 9.8e-57 223.4 120 85.0
MSTRG.12237 Avicennia marina HOM05D004304 ORTHO05D005229 3.7e-56 221.5 124 84.7
unitig_37.g12596 Utricularia gibba HOM05D004304 ORTHO05D005229 3.7e-56 221.5 128 82.0
Peaxi162Scf00047g02135 Petunia axillaris HOM05D004304 ORTHO05D005229 5.4e-55 217.6 112 91.1
Eucgr.K00654 Eucalyptus grandis HOM05D004304 ORTHO05D005229 2.0e-54 215.7 114 86.8
SEGI_10863 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 4.6e-54 214.5 126 74.6
MBI16_g26392_MAGBIO Magnolia biondii HOM05D004304 ORTHO05D005229 5.9e-54 214.2 114 86.8
SMO147G0193 Selaginella moellendorffii HOM05D004304 ORTHO05D005229 5.9e-54 214.2 126 75.4
TAR624G0596 Trochodendron aralioides HOM05D004304 ORTHO05D005229 1.0e-53 213.4 109 89.0
THA.LOC109116190 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 2.5e-52 208.8 108 90.7
FAN04G0826 Fragaria x ananassa HOM05D004304 ORTHO05D005229 3.4e-49 198.4 149 67.8
CSS0024587 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 2.7e-46 188.7 100 92.0
Dinv05830 Davidia involucrata HOM05D004304 ORTHO05D005229 1.7e-45 186.0 111 79.3
Lsat_1_v5_gn_9_104560 Lactuca sativa HOM05D004304 ORTHO05D005229 5.0e-45 184.5 124 74.2
Dinv21270 Davidia involucrata HOM05D004304 ORTHO05D005229 1.9e-44 182.6 87 95.4
Manes.13G062800 Manihot esculenta HOM05D004304 ORTHO05D005229 8.1e-43 177.2 82 97.6
Sed0023039 Sechium edule HOM05D004304 ORTHO05D005229 1.8e-42 176.0 85 94.1
QL08p028475 Quercus lobata HOM05D004304 ORTHO05D005229 1.2e-41 173.3 82 96.3
Haze_12682 Corylus avellana HOM05D004304 ORTHO05D005229 7.5e-41 170.6 82 95.1
VMungo0647G2439 Vigna mungo HOM05D004304 ORTHO05D005229 7.5e-41 170.6 82 95.1
AUR62015060 Chenopodium quinoa HOM05D004304 ORTHO05D005229 9.8e-41 170.2 126 68.3
BcaC01g04291 Brassica carinata HOM05D000074 ORTHO05D001293 1.3e-40 169.9 134 65.7
SalBow7G0104 Salvia bowleyana HOM05D004304 ORTHO05D005229 1.9e-39 166.0 83 91.6
Psat2g004600 Pisum sativum HOM05D004304 ORTHO05D005229 3.2e-39 165.2 82 90.2
DCAR_012907 Daucus carota HOM05D004304 ORTHO05D005229 7.1e-39 164.1 77 96.1
Sabra14G0125900 Salix brachista HOM05D004304 ORTHO05D005229 7.8e-38 160.6 110 71.8
FAN04G0834 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.3e-37 159.8 177 50.3
Oeu040468.1 Olea europaea HOM05D004304 ORTHO05D005229 6.6e-37 157.5 78 93.6
DCAR_021105 Daucus carota HOM05D004304 ORTHO05D005229 3.6e-35 151.8 124 62.1
Oeu063643.1 Olea europaea HOM05D004304 ORTHO05D005229 1.1e-34 150.2 78 89.7
BcaB04g17145 Brassica carinata HOM05D004304 ORTHO05D000003 1.2e-33 146.7 78 88.5
unitig_46.g18340 Utricularia gibba HOM05D004304 ORTHO05D005229 2.9e-32 142.1 120 59.2
Cpa.g.c46948 Carica papaya HOM05D004304 ORTHO05D005229 2.4e-31 139.0 64 100.0
BcaB01g01337 Brassica carinata HOM05D004304 ORTHO05D005229 2.7e-30 135.6 73 84.9
SHI10146 Sapria himalayana HOM05D004304 ORTHO05D005229 1.3e-29 133.3 75 84.0
Hund21536 Selenicereus undatus HOM05D004304 ORTHO05D005229 9.6e-28 127.1 58 98.3
C03p43050 Brassica napus HOM05D004304 ORTHO05D005229 6.8e-26 120.9 123 53.7
BolC3t16573H Brassica oleracea HOM05D004304 ORTHO05D005229 6.8e-26 120.9 123 53.7
Ah.01g002230 Amaranthus hybridus HOM05D004304 ORTHO05D005229 5.8e-25 117.9 58 94.8
BcaB03g16127 Brassica carinata HOM05D004304 ORTHO05D005229 6.6e-21 104.4 57 86.0
Nn1g03242 Nelumbo nucifera HOM05D004304 ORTHO05D005229 4.2e-15 85.1 44 88.6
Solyc07g047890.4 Solanum lycopersicum HOM05D004304 ORTHO05D393077 9.3e-07 57.4 69 42.0


User provided reference genes

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