Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022072 Camellia sinensis var. sinensis HOM05D009264 ORTHO05D009202 6.2e-44 180.6 107 100.0
CSS0039740 Camellia sinensis var. sinensis HOM05D009264 ORTHO05D009202 3.4e-42 174.9 107 98.1
Actinidia01668 Actinidia chinensis HOM05D009264 ORTHO05D009202 3.2e-16 88.6 87 58.6
RcHm_v2.0_Chr3g0457951 Rosa chinensis HOM05D009264 ORTHO05D009202 3.7e-12 75.1 116 48.3
Actinidia35505 Actinidia chinensis HOM05D009264 ORTHO05D009202 4.8e-12 74.7 98 51.0
CiPaw.08G152800 Carya illinoinensis HOM05D009264 ORTHO05D009202 8.2e-12 73.9 122 45.1
Actinidia16886 Actinidia chinensis HOM05D009264 ORTHO05D009202 5.3e-11 71.2 119 43.7
Potri.005G006000 Populus trichocarpa HOM05D014622 ORTHO05D009202 6.9e-11 70.9 92 47.8
CSS0006203 Camellia sinensis var. sinensis HOM05D009264 ORTHO05D009202 2.6e-10 68.9 121 45.5
Medtr7g111770 Medicago truncatula HOM05D011874 ORTHO05D009202 1.0e-09 67.0 97 46.4
CiPaw.07G033300 Carya illinoinensis HOM05D009264 ORTHO05D009202 4.9e-09 64.7 124 41.9
CiPaw.07G122200 Carya illinoinensis HOM05D008942 ORTHO05D009202 4.9e-09 64.7 119 39.5
Phvul.007G211500 Phaseolus vulgaris HOM05D024167 ORTHO05D009202 4.9e-09 64.7 111 39.6
Aqoxy2G02597 Aquilegia oxysepala HOM05D009264 ORTHO05D009202 6.5e-09 64.3 119 39.5
Thecc.01G321000 Theobroma cacao HOM05D008942 ORTHO05D009202 1.1e-08 63.5 123 38.2
Potri.005G006200 Populus trichocarpa HOM05D014622 ORTHO05D009202 2.5e-08 62.4 123 39.8
FAN09G1104 Fragaria x ananassa HOM05D009264 ORTHO05D009202 3.2e-08 62.0 112 41.1
FvH4_6g08100 Fragaria vesca HOM05D009264 ORTHO05D009202 4.2e-08 61.6 114 43.9
FAN14G2966 Fragaria x ananassa HOM05D009264 ORTHO05D009202 4.2e-08 61.6 114 43.9
QL12p033984 Quercus lobata HOM05D008942 ORTHO05D009202 5.5e-08 61.2 127 36.2
Hma1.2p1_0052F.1_g030560 Hydrangea macrophylla HOM05D009264 ORTHO05D009202 9.3e-08 60.5 137 40.1
Thecc.05G327000 Theobroma cacao HOM05D021022 ORTHO05D009202 9.3e-08 60.5 99 52.5
CiPaw.08G085100 Carya illinoinensis HOM05D008942 ORTHO05D009202 1.2e-07 60.1 132 39.4
Duzib128G1262 Durio zibethinus HOM05D021022 ORTHO05D009202 1.2e-07 60.1 97 50.5
Glyma.19G226800 Glycine max HOM05D011874 ORTHO05D009202 1.2e-07 60.1 85 47.1
Potri.013G005300 Populus trichocarpa HOM05D014622 ORTHO05D009202 1.6e-07 59.7 120 39.2
TAR633G2549 Trochodendron aralioides HOM05D009264 ORTHO05D009202 1.6e-07 59.7 113 46.0
VMungo1383G0753 Vigna mungo HOM05D011874 ORTHO05D009202 1.6e-07 59.7 141 37.6
QL03p008780 Quercus lobata HOM05D009264 ORTHO05D009202 2.1e-07 59.3 64 50.0
QL03p013046 Quercus lobata HOM05D009264 ORTHO05D009202 2.1e-07 59.3 64 50.0
Nn4g25438 Nelumbo nucifera HOM05D008942 ORTHO05D009202 2.7e-07 58.9 88 45.5
SalBow7G0413 Salvia bowleyana HOM05D009264 ORTHO05D009202 2.7e-07 58.9 115 39.1
Phvul.001G223400 Phaseolus vulgaris HOM05D011874 ORTHO05D009202 3.5e-07 58.5 107 36.4
Sabra14G0085900 Salix brachista HOM05D008942 ORTHO05D009202 4.6e-07 58.2 123 39.8
Glyma.03G229500 Glycine max HOM05D011874 ORTHO05D009202 6.0e-07 57.8 81 45.7
Lj1g0011687 Lotus japonicus HOM05D011874 ORTHO05D009202 6.0e-07 57.8 106 40.6
QL12p033964 Quercus lobata HOM05D008942 ORTHO05D009202 1.3e-06 56.6 120 39.2
Sabra02G0164800 Salix brachista HOM05D008942 ORTHO05D009202 1.3e-06 56.6 126 35.7
PGR083G1195 Punica granatum HOM05D009264 ORTHO05D009202 3.0e-06 55.5 121 36.4
FAN02G1552 Fragaria x ananassa HOM05D009264 ORTHO05D009202 3.9e-06 55.1 112 38.4
Nn3g21851 Nelumbo nucifera HOM05D008325 ORTHO05D010336 3.9e-06 55.1 119 39.5
VMungo0720G1850 Vigna mungo HOM05D024167 ORTHO05D009202 5.1e-06 54.7 108 36.1
Oeu016555.1 Olea europaea HOM05D038384 ORTHO05D009202 6.7e-06 54.3 63 46.0
Oeu016561.1 Olea europaea HOM05D038384 ORTHO05D009202 6.7e-06 54.3 64 46.9
CiPaw.07G033600 Carya illinoinensis HOM05D009264 ORTHO05D009202 8.7e-06 53.9 115 37.4
Potri.002G190800 Populus trichocarpa HOM05D008325 ORTHO05D010336 8.7e-06 53.9 100 38.0


User provided reference genes

Program Settings