Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022058 Camellia sinensis var. sinensis HOM05D007001 ORTHO05D005587 0.0e+00 1411.0 712 100.0
Actinidia00536 Actinidia chinensis HOM05D007001 ORTHO05D005587 1.2e-244 850.1 759 63.0
Actinidia36006 Actinidia chinensis HOM05D007001 ORTHO05D005587 3.4e-223 778.9 729 61.3
vmacro02090 Vaccinium macrocarpon HOM05D007001 ORTHO05D005587 1.5e-178 630.6 759 52.0
Rhsim11G0179000 Rhododendron simsii HOM05D007001 ORTHO05D005587 2.0e-175 620.2 755 53.2
TAR376G0762 Trochodendron aralioides HOM05D007001 ORTHO05D005587 7.6e-122 442.2 807 40.1
Thecc.02G082800 Theobroma cacao HOM05D007001 ORTHO05D005587 4.9e-121 439.5 761 41.3
Dinv23502 Davidia involucrata HOM05D007001 ORTHO05D005587 1.8e-115 421.0 507 52.7
QL11p044451 Quercus lobata HOM05D007001 ORTHO05D005587 1.1e-112 411.8 768 40.2
Duzib052G0704 Durio zibethinus HOM05D007001 ORTHO05D005587 1.4e-112 411.4 753 40.5
Duzib132G0641 Durio zibethinus HOM05D007001 ORTHO05D005587 2.1e-111 407.5 758 38.5
Atru.chr5.3047 Acer truncatum HOM05D007001 ORTHO05D005587 2.3e-110 404.1 765 39.7
COL.COLO4_25959 Corchorus olitorius HOM05D007001 ORTHO05D005587 5.1e-110 402.9 762 38.7
Haze_02407 Corylus avellana HOM05D007001 ORTHO05D005587 5.1e-110 402.9 758 41.7
CiPaw.05G066600 Carya illinoinensis HOM05D007001 ORTHO05D005587 2.5e-109 400.6 758 39.6
Manes.04G089500 Manihot esculenta HOM05D007001 ORTHO05D005587 1.3e-105 388.3 756 38.2
Cc02_g17350 Coffea canephora HOM05D007001 ORTHO05D005587 2.1e-103 380.9 758 39.1
Gohir.D12G029100 Gossypium hirsutum HOM05D007001 ORTHO05D005587 8.7e-102 375.6 763 37.2
Gorai.008G029800 Gossypium raimondii HOM05D007001 ORTHO05D005587 9.6e-101 372.1 765 36.6
Cfa004981 Carpinus fangiana HOM05D007001 ORTHO05D005587 1.8e-99 367.9 754 40.7
Eucgr.G01689 Eucalyptus grandis HOM05D007001 ORTHO05D005587 2.4e-99 367.5 773 36.9
Ciclev10027908m.g Citrus clementina HOM05D007001 ORTHO05D005587 9.0e-99 365.5 767 37.3
Potri.004G157000 Populus trichocarpa HOM05D007001 ORTHO05D005587 3.5e-95 353.6 759 37.8
Oeu029153.2 Olea europaea HOM05D007001 ORTHO05D005587 5.7e-93 346.3 736 35.9
CiPaw.06G134300 Carya illinoinensis HOM05D007001 ORTHO05D005587 5.3e-91 339.7 709 37.9
Nn5g29665 Nelumbo nucifera HOM05D007001 ORTHO05D005587 5.9e-90 336.3 800 34.6
GSVIVG01023803001 Vitis vinifera HOM05D007001 ORTHO05D005587 1.6e-87 328.2 396 49.0
Manes.11G085600 Manihot esculenta HOM05D007001 ORTHO05D005587 7.4e-85 319.3 750 35.3
TWI79G0124 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 7.4e-85 319.3 737 35.7
Oeu055597.1 Olea europaea HOM05D007001 ORTHO05D005587 9.7e-85 318.9 750 36.1
Prupe.8G094200 Prunus persica HOM05D007001 ORTHO05D005587 1.1e-83 315.5 758 35.1
MD10G1072800 Malus domestica HOM05D007001 ORTHO05D005587 1.4e-83 315.1 768 36.2
RcHm_v2.0_Chr6g0265031 Rosa chinensis HOM05D007001 ORTHO05D005587 1.4e-83 315.1 759 35.4
FvH4_2g09190 Fragaria vesca HOM05D007001 ORTHO05D005587 4.1e-83 313.5 757 35.4
Sabra04G0104900 Salix brachista HOM05D007001 ORTHO05D005587 1.5e-82 311.6 759 35.3
Sabra09G0090900 Salix brachista HOM05D007001 ORTHO05D005587 5.9e-82 309.7 709 36.7
TWI31G1402 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 3.8e-81 307.0 739 34.6
Cpa.g.sc17.13 Carica papaya HOM05D007001 ORTHO05D005587 1.1e-80 305.4 784 35.5
MD05G1064100 Malus domestica HOM05D007001 ORTHO05D005587 1.4e-80 305.1 756 34.9
MBI10_g06730_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 4.2e-80 303.5 811 31.9
Potri.009G118651 Populus trichocarpa HOM05D007001 ORTHO05D005587 1.6e-79 301.6 752 34.4
Peaxi162Scf00016g00623 Petunia axillaris HOM05D007001 ORTHO05D005587 2.6e-77 294.3 752 33.6
PGSC0003DMG400000714 Solanum tuberosum HOM05D007001 ORTHO05D005587 3.5e-74 283.9 735 33.9
Nitab4.5_0000308g0260 Nicotiana tabacum HOM05D007001 ORTHO05D005587 4.5e-74 283.5 726 35.1
Lj3g0024948 Lotus japonicus HOM05D007001 ORTHO05D005587 7.7e-74 282.7 766 34.6
Sopen01g051970 Solanum pennellii HOM05D007001 ORTHO05D005587 2.9e-73 280.8 742 33.6
Solyc01g109780.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 3.2e-72 277.3 735 33.5
Glyma.11G116700 Glycine max HOM05D007001 ORTHO05D005587 2.1e-71 274.6 770 34.2
FAN27G0151 Fragaria x ananassa HOM05D007001 ORTHO05D005587 3.6e-71 273.9 737 34.3
FAN24G0234 Fragaria x ananassa HOM05D007001 ORTHO05D005587 8.0e-71 272.7 739 34.0
FAN15G3137 Fragaria x ananassa HOM05D007001 ORTHO05D005587 3.1e-67 260.8 735 33.9
Glyma.12G042500 Glycine max HOM05D007001 ORTHO05D005587 5.3e-67 260.0 773 32.6
arahy.Tifrunner.gnm1.ann1.M1RWF9 Arachis hypogaea HOM05D007001 ORTHO05D005587 9.1e-67 259.2 749 33.4
Lalb_Chr03g0025591 Lupinus albus HOM05D007001 ORTHO05D005587 2.6e-66 257.7 736 34.8
Lalb_Chr19g0138701 Lupinus albus HOM05D007001 ORTHO05D005587 2.6e-66 257.7 733 34.0
arahy.Tifrunner.gnm1.ann1.I3TCZM Arachis hypogaea HOM05D007001 ORTHO05D005587 7.7e-66 256.1 744 33.1
ECA240G0129 Erigeron canadensis HOM05D007001 ORTHO05D005587 5.0e-65 253.4 479 38.8
PGR042G0047 Punica granatum HOM05D007001 ORTHO05D005587 5.0e-65 253.4 758 34.0
Aqoxy5G01586 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 2.7e-63 247.7 810 33.0
Nitab4.5_0009972g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 2.7e-63 247.7 710 33.0
AUR62011300 Chenopodium quinoa HOM05D007001 ORTHO05D005587 6.1e-63 246.5 738 31.7
AUR62016758 Chenopodium quinoa HOM05D007001 ORTHO05D005587 3.0e-62 244.2 734 30.9
VMungo1127G1486 Vigna mungo HOM05D007001 ORTHO05D005587 6.8e-62 243.0 778 31.9
Ca_20889_v3 Cicer arietinum L. HOM05D007001 ORTHO05D005587 2.4e-59 234.6 770 31.3
EL10Ac9g21706 Beta vulgaris HOM05D007001 ORTHO05D005587 1.6e-58 231.9 808 29.2
Phvul.011G044100 Phaseolus vulgaris HOM05D007001 ORTHO05D005587 1.3e-57 228.8 773 31.3
Migut.N01249 Erythranthe guttata HOM05D007001 ORTHO05D005587 1.7e-57 228.4 403 40.4
HanXRQChr03g0074191 Helianthus annuus HOM05D007001 ORTHO05D005587 2.1e-55 221.5 429 36.8
Hund06244 Selenicereus undatus HOM05D007001 ORTHO05D005587 2.7e-55 221.1 759 28.7
MBI16_g08804_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 3.6e-55 220.7 474 35.7
SalBow6G2324 Salvia bowleyana HOM05D007001 ORTHO05D005587 4.7e-55 220.3 751 29.4
Nitab4.5_0008874g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 6.1e-55 219.9 418 36.8
SalBow3G2815 Salvia bowleyana HOM05D007001 ORTHO05D005587 3.0e-54 217.6 733 31.1
ClCG11G004280 Citrullus lanatus HOM05D007001 ORTHO05D005587 4.0e-54 217.2 786 30.2
CsaV3_2G014890 Cucumis sativus L. HOM05D007001 ORTHO05D005587 1.5e-53 215.3 786 30.0
Ah.01g019240 Amaranthus hybridus HOM05D007001 ORTHO05D005587 5.7e-53 213.4 362 39.0
Sed0007775 Sechium edule HOM05D007001 ORTHO05D005587 5.7e-53 213.4 758 29.6
Peaxi162Scf00003g01121 Petunia axillaris HOM05D007001 ORTHO05D005587 1.3e-49 202.2 378 38.6
TPR.G22545 Trifolium pratense HOM05D007001 ORTHO05D005587 2.3e-49 201.4 766 32.1
MELO3C023308.2 Cucumis melo HOM05D007001 ORTHO05D005587 6.6e-49 199.9 784 28.4
DCAR_001566 Daucus carota HOM05D007001 ORTHO05D005587 1.5e-48 198.7 735 30.5
PSO764G0276 Papaver somniferum HOM05D007001 ORTHO05D005587 1.5e-45 188.7 741 28.2
Psat7g184200 Pisum sativum HOM05D007001 ORTHO05D005587 4.4e-45 187.2 434 34.3
Migut.B00223 Erythranthe guttata HOM05D007001 ORTHO05D005587 7.5e-45 186.4 431 36.0
PSO170G6310 Papaver somniferum HOM05D007001 ORTHO05D005587 7.5e-45 186.4 743 28.1
Medtr4g070420 Medicago truncatula HOM05D007001 ORTHO05D005587 3.7e-44 184.1 731 30.5
Lsat_1_v5_gn_9_108461 Lactuca sativa HOM05D007001 ORTHO05D005587 4.9e-44 183.7 701 30.2
Nitab4.5_0007728g0020 Nicotiana tabacum HOM05D007001 ORTHO05D005587 1.7e-41 175.3 250 41.6
Aqoxy6G01158 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 4.3e-40 170.6 778 28.0
PSO675G1875 Papaver somniferum HOM05D007001 ORTHO05D005587 2.8e-39 167.9 745 27.1
Gohir.A12G029800 Gossypium hirsutum HOM05D007001 ORTHO05D005587 6.1e-39 166.8 492 31.1
THA.LOC104807308 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 6.1e-39 166.8 410 34.9
PGSC0003DMG400007729 Solanum tuberosum HOM05D007001 ORTHO05D005587 3.1e-38 164.5 261 40.2
Nn1g04928 Nelumbo nucifera HOM05D007001 ORTHO05D005587 1.4e-35 155.6 537 30.5
DCAR_028976 Daucus carota HOM05D007001 ORTHO05D005587 2.0e-34 151.8 712 27.7
Sopen10g023370 Solanum pennellii HOM05D007001 ORTHO05D005587 1.3e-33 149.1 252 38.9
AL3G52490 Arabidopsis lyrata HOM05D008776 ORTHO05D005587 6.6e-33 146.7 475 31.4
Aa31LG8G13740 Aethionema arabicum HOM05D008776 ORTHO05D005587 1.9e-32 145.2 353 35.1
Lalb_Chr01g0002461 Lupinus albus HOM05D007001 ORTHO05D005587 8.1e-31 139.8 253 40.7
THA.LOC104804555 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 4.0e-30 137.5 358 35.2
AT2G16365 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 9.8e-29 132.9 359 35.1
Sp3g29580 Schrenkiella parvula HOM05D008776 ORTHO05D005587 8.3e-28 129.8 364 32.4
BcaB03g16349 Brassica carinata HOM05D008776 ORTHO05D005587 2.4e-27 128.3 359 34.3
Oeu020745.1 Olea europaea HOM05D000342 ORTHO05D000217 2.1e-26 125.2 228 37.7
Thhalv10022682m.g Eutrema salsugineum HOM05D008776 ORTHO05D005587 2.7e-26 124.8 361 33.8
Carub.0003s3009 Capsella rubella HOM05D008776 ORTHO05D005587 3.5e-26 124.4 350 33.1
A07p04560 Brassica napus HOM05D008776 ORTHO05D005587 4.6e-26 124.0 356 33.7
BraA07t28245Z Brassica rapa HOM05D008776 ORTHO05D005587 4.6e-26 124.0 356 33.7
BcaC06g36144 Brassica carinata HOM05D008776 ORTHO05D005587 7.8e-26 123.2 356 34.3
BolC7t41148H Brassica oleracea HOM05D008776 ORTHO05D005587 7.8e-26 123.2 356 34.3
Sc08g0000600 Simmondsia chinensis HOM05D007001 ORTHO05D005587 1.3e-25 122.5 289 36.7
C07p07280 Brassica napus HOM05D008776 ORTHO05D005587 6.6e-25 120.2 356 33.4
BcaB08g34642 Brassica carinata HOM05D008776 ORTHO05D005587 1.5e-24 119.0 344 32.8
SGA_v2.0_scaffold125G33736 Striga asiatica HOM05D007001 ORTHO05D005587 5.6e-24 117.1 482 27.4
A03p45740 Brassica napus HOM05D008776 ORTHO05D005587 6.2e-23 113.6 362 29.8
BraA03t13706Z Brassica rapa HOM05D008776 ORTHO05D005587 1.1e-22 112.8 360 30.8
CARHR106580 Cardamine hirsuta HOM05D008776 ORTHO05D005587 3.1e-22 111.3 236 34.3
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 2.0e-21 108.6 193 35.2
BcaC01g03031 Brassica carinata HOM05D008776 ORTHO05D005587 2.6e-21 108.2 361 30.2
C03p56950 Brassica napus HOM05D008776 ORTHO05D005587 2.6e-21 108.2 361 30.2
BolC3t17973H Brassica oleracea HOM05D008776 ORTHO05D005587 2.6e-21 108.2 361 30.2
Solyc10g052650.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 2.2e-20 105.1 104 49.0
CDE06G0685 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 4.9e-20 104.0 209 34.4
Os01g0687300 Oryza sativa ssp. japonica HOM05D024721 ORTHO05D025980 4.0e-14 84.3 671 23.7
AT4G34550 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 1.2e-13 82.8 228 33.8
A08p16740 Brassica napus HOM05D008776 ORTHO05D005587 1.3e-12 79.3 333 29.1
BraA08t33639Z Brassica rapa HOM05D008776 ORTHO05D005587 1.3e-12 79.3 333 29.1
Os05g0552100 Oryza sativa ssp. japonica HOM05D024721 ORTHO05D025980 2.4e-11 75.1 338 26.9
unitig_699.g19881 Utricularia gibba HOM05D007001 ORTHO05D005587 3.2e-11 74.7 370 25.9
BcaC02g07919 Brassica carinata HOM05D008776 ORTHO05D005587 4.2e-11 74.3 80 41.2
Zm00001eb295010 Zea mays HOM05D024721 ORTHO05D025980 2.1e-10 72.0 378 25.1
CDE04G2987 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 3.5e-10 71.2 204 30.9
BcaB03g11826 Brassica carinata HOM05D008776 ORTHO05D005587 3.9e-09 67.8 213 30.0
HPP92_020281 Vanilla planifolia HOM05D007001 ORTHO05D005587 3.9e-09 67.8 79 38.0
Carub.0007s0575 Capsella rubella HOM05D008776 ORTHO05D005587 6.6e-09 67.0 234 30.8
Haze_00347 Corylus avellana HOM05D002899 ORTHO05D003850 3.3e-08 64.7 45 66.7
Zm00001eb342970 Zea mays HOM05D024721 ORTHO05D025980 4.8e-07 60.8 649 22.3
HPP92_021324 Vanilla planifolia HOM05D007001 ORTHO05D005587 1.1e-06 59.7 303 25.7
SEGI_13389 Sequoiadendron giganteum HOM05D007001 ORTHO05D005587 1.4e-06 59.3 122 30.3


User provided reference genes

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