Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 5.0e-145 517.7 253 100.0
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 4.2e-115 418.3 251 80.1
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 7.4e-112 407.5 251 78.9
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 2.8e-111 405.6 251 77.3
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 1.1e-110 403.7 253 77.1
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 1.9e-107 392.9 253 75.9
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 1.6e-106 389.8 251 74.5
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 2.1e-106 389.4 251 73.7
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 2.1e-106 389.4 251 74.5
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 3.5e-106 388.7 251 74.1
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 1.3e-105 386.7 251 73.7
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 1.8e-105 386.3 255 72.2
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 2.3e-105 386.0 251 74.1
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 3.9e-105 385.2 251 71.7
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 6.7e-105 384.4 251 74.1
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 1.9e-104 382.9 251 72.9
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 4.3e-104 381.7 252 72.6
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 7.4e-104 380.9 251 75.3
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 9.6e-104 380.6 251 72.5
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 3.7e-103 378.6 251 72.1
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 6.2e-103 377.9 251 72.9
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 1.4e-102 376.7 251 72.5
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 1.8e-102 376.3 251 70.1
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 2.4e-102 375.9 253 71.1
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 5.3e-102 374.8 251 70.9
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 5.3e-102 374.8 253 71.9
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 5.3e-102 374.8 251 70.9
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 5.3e-102 374.8 251 73.7
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 5.3e-102 374.8 251 72.1
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 6.9e-102 374.4 251 72.5
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 1.5e-101 373.2 251 72.1
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 5.8e-101 371.3 252 73.0
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 7.6e-101 370.9 252 71.4
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 1.0e-100 370.5 251 70.1
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 1.7e-100 369.8 251 70.1
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 2.9e-100 369.0 251 70.5
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 3.8e-100 368.6 251 71.7
Cfa008626 Carpinus fangiana HOM05D004292 ORTHO05D005206 1.1e-99 367.1 251 71.3
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 2.5e-99 365.9 252 71.0
MD13G1023800 Malus domestica HOM05D004292 ORTHO05D005206 3.2e-99 365.5 252 73.0
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 4.2e-99 365.2 253 70.8
RcHm_v2.0_Chr4g0441581 Rosa chinensis HOM05D004292 ORTHO05D005206 4.2e-99 365.2 251 72.5
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 7.1e-99 364.4 253 68.8
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 4.6e-98 361.7 251 70.1
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 4.6e-98 361.7 251 67.7
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 6.0e-98 361.3 253 68.8
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 1.0e-97 360.5 251 69.3
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 1.0e-97 360.5 253 70.0
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 2.3e-97 359.4 252 69.8
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 2.3e-97 359.4 251 71.3
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 3.9e-97 358.6 251 70.9
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 6.7e-97 357.8 251 68.5
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 8.7e-97 357.5 251 70.9
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 8.7e-97 357.5 251 70.9
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.1e-96 357.1 251 70.5
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 1.5e-96 356.7 259 68.0
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 1.5e-96 356.7 253 66.4
FvH4_4g32670 Fragaria vesca HOM05D004292 ORTHO05D005206 3.3e-96 355.5 251 70.9
FAN12G2104 Fragaria x ananassa HOM05D004292 ORTHO05D005206 3.3e-96 355.5 251 70.9
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 3.3e-96 355.5 251 68.5
COL.COLO4_13153 Corchorus olitorius HOM05D004292 ORTHO05D005206 9.7e-96 354.0 251 70.9
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 1.3e-95 353.6 251 68.1
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 1.6e-95 353.2 251 68.9
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.6e-95 353.2 249 69.1
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.6e-95 353.2 249 69.1
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 1.6e-95 353.2 253 67.6
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 1.6e-95 353.2 252 69.0
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 1.6e-95 353.2 251 68.5
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 3.7e-95 352.1 251 68.1
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 4.8e-95 351.7 251 68.5
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 6.3e-95 351.3 251 64.5
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 8.2e-95 350.9 249 68.7
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 1.4e-94 350.1 253 67.2
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 1.8e-94 349.7 253 66.8
Sc04g0005360 Simmondsia chinensis HOM05D004292 ORTHO05D005206 1.8e-94 349.7 253 65.2
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 3.1e-94 349.0 251 66.5
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 3.1e-94 349.0 251 67.7
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 4.1e-94 348.6 251 67.7
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 4.1e-94 348.6 252 67.9
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 5.3e-94 348.2 251 67.7
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 9.0e-94 347.4 253 66.0
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 1.5e-93 346.7 251 66.9
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 2.0e-93 346.3 251 67.7
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 2.0e-93 346.3 251 67.3
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 2.0e-93 346.3 253 65.6
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 2.6e-93 345.9 252 66.7
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 2.6e-93 345.9 253 66.4
ClCG01G006270 Citrullus lanatus HOM05D004292 ORTHO05D005206 3.4e-93 345.5 251 65.3
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 4.5e-93 345.1 252 66.7
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 4.5e-93 345.1 251 67.3
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 4.5e-93 345.1 251 67.3
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 4.5e-93 345.1 251 67.3
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 5.9e-93 344.7 251 67.3
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 7.6e-93 344.4 253 65.2
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 1.0e-92 344.0 228 71.9
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 1.3e-92 343.6 251 66.1
CsaV3_5G028400 Cucumis sativus L. HOM05D004292 ORTHO05D005206 1.7e-92 343.2 251 64.5
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 2.9e-92 342.4 251 66.1
MELO3C005303.2 Cucumis melo HOM05D004292 ORTHO05D005206 6.5e-92 341.3 251 64.1
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 6.5e-92 341.3 254 64.6
AUR62014183 Chenopodium quinoa HOM05D004292 ORTHO05D005206 2.1e-90 336.3 251 64.9
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 2.7e-90 335.9 246 67.9
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 2.7e-90 335.9 246 68.3
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 2.7e-90 335.9 246 67.9
BcaC06g35023 Brassica carinata HOM05D004292 ORTHO05D005206 3.0e-89 332.4 275 62.5
C07p20600 Brassica napus HOM05D004292 ORTHO05D005206 3.0e-89 332.4 275 62.5
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 3.9e-89 332.0 295 57.6
Sed0011413 Sechium edule HOM05D004292 ORTHO05D005206 3.9e-89 332.0 251 64.5
Nitab4.5_0000426g0230 Nicotiana tabacum HOM05D004292 ORTHO05D005206 5.1e-89 331.6 251 65.7
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 6.7e-89 331.3 242 68.2
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 8.7e-89 330.9 247 66.0
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 1.5e-88 330.1 242 68.2
Lsat_1_v5_gn_8_44580 Lactuca sativa HOM05D004292 ORTHO05D005206 2.5e-88 329.3 254 65.0
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 1.6e-87 326.6 254 63.4
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 2.8e-87 325.9 252 64.3
Hund10268 Selenicereus undatus HOM05D004292 ORTHO05D005206 4.1e-86 322.0 254 61.8
DCAR_023592 Daucus carota HOM05D004292 ORTHO05D005206 5.9e-85 318.2 251 64.9
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 7.7e-85 317.8 254 63.4
Ca_12594_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 8.5e-84 314.3 251 62.9
Aa31LG4G10150 Aethionema arabicum HOM05D004292 ORTHO05D005206 2.5e-83 312.8 294 55.8
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 1.0e-81 307.4 243 61.3
Dinv14417 Davidia involucrata HOM05D004292 ORTHO05D005206 2.3e-81 306.2 185 80.0
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 6.7e-81 304.7 243 61.7
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 2.6e-80 302.8 265 57.4
DCAR_030229 Daucus carota HOM05D004292 ORTHO05D005206 2.0e-77 293.1 252 60.7
Oeu018604.1 Olea europaea HOM05D004292 ORTHO05D005206 3.4e-77 292.4 175 80.6
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 1.3e-76 290.4 204 69.1
MBI12_g36036_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 9.4e-75 284.3 245 60.8
Lj6C744T5 Lonicera japonica HOM05D004292 ORTHO05D005206 2.7e-74 282.7 251 61.0
Ah.03g137320 Amaranthus hybridus HOM05D004292 ORTHO05D001279 4.1e-70 268.9 176 72.7
Cc11_g08440 Coffea canephora HOM05D004292 ORTHO05D005206 4.7e-66 255.4 189 67.7
vmacro10650 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 3.3e-64 249.2 150 80.7
vmacro10653 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 3.3e-64 249.2 150 80.7
Gohir.A01G151400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.1e-62 244.2 183 67.8
Ca_12581_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 3.5e-61 239.2 152 75.7
Mapoly0185s0002 Marchantia polymorpha HOM05D004292 ORTHO05D005206 3.2e-59 232.6 252 46.4
unitig_699.g19535 Utricularia gibba HOM05D004292 ORTHO05D005206 2.7e-53 213.0 177 60.5
Pp3c24_11420 Physcomitrium patens HOM05D004292 ORTHO05D005206 8.0e-50 201.4 182 54.9
SMO111G0032 Selaginella moellendorffii HOM05D004292 ORTHO05D005206 7.0e-46 188.3 171 57.9
C06p45020 Brassica napus HOM05D004292 ORTHO05D005206 5.9e-45 185.3 187 55.1
BolC6t39560H Brassica oleracea HOM05D004292 ORTHO05D005206 5.9e-45 185.3 187 55.1
CDE05G3401 Ceratophyllum demersum HOM05D001044 ORTHO05D004551 3.5e-37 159.5 113 69.0
Pp3c7_7180 Physcomitrium patens HOM05D004292 ORTHO05D005206 6.6e-36 155.2 160 45.0
AL337U10010 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 9.5e-35 151.4 86 81.4
AagrBONN_evm.TU.Sc2ySwM_368.1350 Anthoceros agrestis HOM05D004292 ORTHO05D005206 1.5e-32 144.1 135 51.1
Cc11_g08450 Coffea canephora HOM05D004292 ORTHO05D005206 2.3e-25 120.2 65 84.6
GSVIVG01038114001 Vitis vinifera HOM05D000242 ORTHO05D000631 2.3e-25 120.2 68 77.9
DCAR_000574 Daucus carota HOM05D004292 ORTHO05D005206 1.3e-23 114.4 106 62.3
MD06G1224600 Malus domestica HOM05D004292 ORTHO05D005206 4.1e-22 109.4 68 73.5
Cre03.g173550 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 3.5e-21 106.3 178 36.0
C02p28370 Brassica napus HOM05D004292 ORTHO05D005206 5.6e-19 99.0 102 51.0
BolC2t08881H Brassica oleracea HOM05D004292 ORTHO05D005206 5.6e-19 99.0 102 51.0
PRCOL_00000603 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 2.8e-18 96.7 166 34.9
Cc07_g18460 Coffea canephora HOM05D004292 ORTHO05D005206 1.8e-17 94.0 79 65.8
DCAR_009985 Daucus carota HOM05D004292 ORTHO05D005206 7.6e-16 88.6 92 57.6
DCAR_009878 Daucus carota HOM05D004292 ORTHO05D005206 1.6e-13 80.9 86 57.0
Os09g0411500 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 1.8e-09 67.4 58 55.2
arahy.Tifrunner.gnm1.ann1.B49LBP Arachis hypogaea HOM05D004292 ORTHO05D005206 9.0e-09 65.1 65 52.3
Lj4g0003601 Lotus japonicus HOM05D000353 ORTHO05D000174 1.7e-07 60.8 38 73.7
arahy.Tifrunner.gnm1.ann1.06RDDY Arachis hypogaea HOM05D004292 ORTHO05D005206 4.9e-07 59.3 54 59.3
Cre03.g160850 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 5.4e-06 55.8 172 27.9


User provided reference genes

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