Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022046 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 0.0e+00 1115.1 566 100.0
CSS0015967 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 0.0e+00 1111.3 566 99.6
Actinidia07259 Actinidia chinensis HOM05D004765 ORTHO05D005900 1.7e-286 988.8 560 89.1
Actinidia24229 Actinidia chinensis HOM05D004765 ORTHO05D005900 1.7e-286 988.8 560 88.6
CSS0013873 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.4e-283 979.2 553 89.9
CSS0028820 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 4.0e-283 977.6 553 89.9
Dinv08934 Davidia involucrata HOM05D004765 ORTHO05D005900 1.6e-276 955.7 566 84.8
Dinv22819 Davidia involucrata HOM05D004765 ORTHO05D005900 2.9e-273 944.9 560 84.5
vmacro14340 Vaccinium macrocarpon HOM05D004765 ORTHO05D005900 3.2e-272 941.4 552 86.8
GSVIVG01036081001 Vitis vinifera HOM05D004765 ORTHO05D005900 3.3e-269 931.4 560 83.6
Rhsim01G0203800 Rhododendron simsii HOM05D004765 ORTHO05D005900 8.3e-265 916.8 603 79.6
Cfa009988 Carpinus fangiana HOM05D004765 ORTHO05D005900 1.1e-261 906.4 559 81.6
Potri.009G160400 Populus trichocarpa HOM05D004765 ORTHO05D005900 1.9e-261 905.6 561 80.2
CiPaw.14G098100 Carya illinoinensis HOM05D004765 ORTHO05D005900 3.3e-261 904.8 560 80.5
Thecc.09G278900 Theobroma cacao HOM05D004765 ORTHO05D005900 5.6e-261 904.0 563 81.0
Prupe.6G135800 Prunus persica HOM05D004765 ORTHO05D005900 1.6e-260 902.5 556 81.5
Manes.11G164300 Manihot esculenta HOM05D004765 ORTHO05D005900 1.4e-259 899.4 559 79.1
RcHm_v2.0_Chr5g0045881 Rosa chinensis HOM05D004765 ORTHO05D005900 5.2e-259 897.5 559 80.5
Ciclev10028115m.g Citrus clementina HOM05D004765 ORTHO05D005900 8.9e-259 896.7 560 79.6
Sabra09G0125600 Salix brachista HOM05D004765 ORTHO05D005900 7.6e-258 893.6 567 79.2
QL01p011857 Quercus lobata HOM05D004765 ORTHO05D005900 2.9e-257 891.7 563 79.8
MD03G1149800 Malus domestica HOM05D004765 ORTHO05D005900 6.4e-257 890.6 569 79.1
TWI31G1403 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 1.9e-256 889.0 557 80.4
COL.COLO4_34006 Corchorus olitorius HOM05D004765 ORTHO05D005900 3.2e-256 888.3 563 79.6
Potri.004G198200 Populus trichocarpa HOM05D004765 ORTHO05D005900 7.1e-256 887.1 562 78.3
MD11G1168600 Malus domestica HOM05D004765 ORTHO05D005900 3.5e-255 884.8 554 80.3
Glyma.11G181400 Glycine max HOM05D004765 ORTHO05D005900 6.0e-255 884.0 560 79.3
Glyma.12G091700 Glycine max HOM05D004765 ORTHO05D005900 6.0e-255 884.0 560 79.5
PGR119G0504 Punica granatum HOM05D004765 ORTHO05D005900 7.8e-255 883.6 560 79.5
Sabra04G0134200 Salix brachista HOM05D004765 ORTHO05D005900 7.8e-255 883.6 562 77.9
Gorai.009G084100 Gossypium raimondii HOM05D004765 ORTHO05D005900 1.3e-254 882.9 549 80.1
Haze_23347 Corylus avellana HOM05D004765 ORTHO05D005900 3.0e-254 881.7 627 72.9
Gohir.D05G082500 Gossypium hirsutum HOM05D004765 ORTHO05D005900 3.0e-254 881.7 549 80.0
Phvul.011G096100 Phaseolus vulgaris HOM05D004765 ORTHO05D005900 3.0e-254 881.7 563 78.9
Gohir.A05G079600 Gossypium hirsutum HOM05D004765 ORTHO05D005900 8.7e-254 880.2 549 80.0
Cpa.g.sc195.23 Carica papaya HOM05D004765 ORTHO05D005900 3.3e-253 878.2 550 79.8
DCAR_006171 Daucus carota HOM05D004765 ORTHO05D005900 1.3e-252 876.3 553 79.7
TWI79G1303 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 4.8e-252 874.4 557 78.1
FAN16G1441 Fragaria x ananassa HOM05D004765 ORTHO05D005900 3.1e-251 871.7 563 77.8
Cc01_g08830 Coffea canephora HOM05D004765 ORTHO05D005900 5.3e-251 870.9 560 78.6
TPR.G17196 Trifolium pratense HOM05D004765 ORTHO05D005900 5.3e-251 870.9 565 77.9
FAN11G2377 Fragaria x ananassa HOM05D004765 ORTHO05D005900 9.0e-251 870.2 562 77.6
Gorai.006G113500 Gossypium raimondii HOM05D004765 ORTHO05D005900 2.6e-250 868.6 552 78.8
Gohir.D09G096800 Gossypium hirsutum HOM05D004765 ORTHO05D005900 7.6e-250 867.1 552 78.8
CANSAT54G2137 Cannabis sativa HOM05D004765 ORTHO05D005900 9.9e-250 866.7 566 76.7
Gohir.A09G097000 Gossypium hirsutum HOM05D004765 ORTHO05D005900 9.9e-250 866.7 552 78.6
Ca_19442_v3 Cicer arietinum L. HOM05D004765 ORTHO05D005900 1.3e-249 866.3 565 77.5
Medtr4g052530 Medicago truncatula HOM05D004765 ORTHO05D005900 1.7e-249 865.9 585 75.2
MSTRG.18770 Avicennia marina HOM05D004765 ORTHO05D005900 9.3e-248 860.1 566 77.2
FAN21G2648 Fragaria x ananassa HOM05D004765 ORTHO05D005900 2.1e-247 859.0 578 75.4
arahy.Tifrunner.gnm1.ann1.HXUJ4C Arachis hypogaea HOM05D004765 ORTHO05D005900 4.6e-247 857.8 560 77.1
Lalb_Chr01g0004931 Lupinus albus HOM05D004765 ORTHO05D005900 6.0e-247 857.4 546 77.8
FAN25G0471 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.7e-246 855.9 586 74.4
arahy.Tifrunner.gnm1.ann1.E8Y1JT Arachis hypogaea HOM05D004765 ORTHO05D005900 3.0e-246 855.1 560 77.0
Lsat_1_v5_gn_1_77581 Lactuca sativa HOM05D004765 ORTHO05D005900 3.0e-246 855.1 555 77.1
Migut.N02474 Erythranthe guttata HOM05D004765 ORTHO05D005900 3.9e-246 854.7 571 76.9
Sc12g0004610 Simmondsia chinensis HOM05D004765 ORTHO05D005900 5.1e-246 854.4 553 76.9
Lj3g0002417 Lotus japonicus HOM05D004765 ORTHO05D005900 1.5e-245 852.8 565 76.6
Lalb_Chr03g0028231 Lupinus albus HOM05D004765 ORTHO05D005900 3.3e-245 851.7 565 75.2
Atru.chr3.3169 Acer truncatum HOM05D004765 ORTHO05D005900 7.3e-245 850.5 545 79.3
Peaxi162Scf00224g00217 Petunia axillaris HOM05D004765 ORTHO05D005900 9.6e-245 850.1 563 76.9
HanXRQChr01g0024031 Helianthus annuus HOM05D004765 ORTHO05D005900 2.8e-244 848.6 556 75.5
ECA248G3663 Erigeron canadensis HOM05D004765 ORTHO05D005900 5.3e-243 844.3 554 76.9
ClCG01G011820 Citrullus lanatus HOM05D004765 ORTHO05D005900 9.0e-243 843.6 560 76.8
Nitab4.5_0003068g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.2e-242 843.2 550 77.8
PSO801G0028 Papaver somniferum HOM05D004765 ORTHO05D005900 1.5e-242 842.8 555 76.9
Nn6g34806 Nelumbo nucifera HOM05D004765 ORTHO05D005900 2.6e-242 842.0 559 77.6
PSO339G1244 Papaver somniferum HOM05D004765 ORTHO05D005900 2.6e-242 842.0 555 76.8
Sopen11g027390 Solanum pennellii HOM05D004765 ORTHO05D005900 2.6e-242 842.0 551 77.5
Hund20934 Selenicereus undatus HOM05D004765 ORTHO05D005900 1.3e-241 839.7 550 75.3
Nitab4.5_0000227g0370 Nicotiana tabacum HOM05D004765 ORTHO05D005900 2.2e-241 839.0 550 77.5
Solyc11g068670.2 Solanum lycopersicum HOM05D004765 ORTHO05D005900 2.2e-241 839.0 551 77.3
ATR0081G060 Amborella trichopoda HOM05D004765 ORTHO05D005900 2.9e-241 838.6 557 74.5
HanXRQChr11g0343661 Helianthus annuus HOM05D004765 ORTHO05D005900 4.9e-241 837.8 556 75.2
Sed0019641 Sechium edule HOM05D004765 ORTHO05D005900 4.9e-241 837.8 560 75.5
Peaxi162Scf00345g01023 Petunia axillaris HOM05D004765 ORTHO05D005900 8.4e-241 837.0 552 76.3
Eucgr.J00522 Eucalyptus grandis HOM05D004765 ORTHO05D005900 1.4e-240 836.3 533 77.9
Nitab4.5_0008177g0070 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.0e-238 830.1 611 72.0
Solyc01g009380.3 Solanum lycopersicum HOM05D004765 ORTHO05D005900 2.3e-238 828.9 558 75.6
Duzib170G0619 Durio zibethinus HOM05D004765 ORTHO05D005900 3.9e-238 828.2 563 74.2
Carub.0005s1005 Capsella rubella HOM05D004765 ORTHO05D005900 6.7e-238 827.4 553 75.2
CsaV3_1G015080 Cucumis sativus L. HOM05D004765 ORTHO05D005900 8.7e-238 827.0 559 75.0
THA.LOC104814781 Tarenaya hassleriana HOM05D004765 ORTHO05D005900 8.7e-238 827.0 552 75.2
MELO3C025589.2 Cucumis melo HOM05D004765 ORTHO05D005900 1.5e-237 826.2 559 75.0
CAN.G745.10 Capsicum annuum HOM05D004765 ORTHO05D005900 1.6e-236 822.8 547 75.9
CARHR104550 Cardamine hirsuta HOM05D004765 ORTHO05D005900 1.6e-236 822.8 551 74.8
Nitab4.5_0000731g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.6e-236 822.8 549 77.0
Aqoxy2G01052 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 1.1e-235 820.1 558 73.1
Sp5g16890 Schrenkiella parvula HOM05D004765 ORTHO05D005900 1.8e-235 819.3 560 73.8
Thhalv10010249m.g Eutrema salsugineum HOM05D004765 ORTHO05D005900 2.4e-235 818.9 560 73.4
SalBow6G2851 Salvia bowleyana HOM05D004765 ORTHO05D005900 3.1e-235 818.5 598 71.2
AT3G44330 Arabidopsis thaliana HOM05D004765 ORTHO05D005900 1.2e-234 816.6 554 74.0
AL5G22480 Arabidopsis lyrata HOM05D004765 ORTHO05D005900 1.3e-233 813.1 554 73.6
Oeu051604.1 Olea europaea HOM05D004765 ORTHO05D005900 1.4e-232 809.7 564 74.3
SGA_v2.0_scaffold177G39433 Striga asiatica HOM05D004765 ORTHO05D005900 1.9e-232 809.3 568 72.4
BcaB01g01169 Brassica carinata HOM05D004765 ORTHO05D005900 2.5e-232 808.9 553 72.7
A06p26850 Brassica napus HOM05D004765 ORTHO05D005900 4.2e-232 808.1 561 72.9
Aqoxy4G02718 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 5.5e-232 807.7 599 69.1
BcaC01g02231 Brassica carinata HOM05D004765 ORTHO05D005900 5.5e-232 807.7 563 72.5
BraA06t25294Z Brassica rapa HOM05D004765 ORTHO05D005900 2.1e-231 805.8 551 73.1
A06p22050 Brassica napus HOM05D004765 ORTHO05D005900 1.3e-230 803.1 554 72.6
C03p69330 Brassica napus HOM05D004765 ORTHO05D005900 2.3e-230 802.4 550 73.3
BolC3t19191H Brassica oleracea HOM05D004765 ORTHO05D005900 2.3e-230 802.4 550 73.3
BcaC01g02031 Brassica carinata HOM05D004765 ORTHO05D005900 1.5e-229 799.7 550 72.9
AUR62020257 Chenopodium quinoa HOM05D004765 ORTHO05D005900 2.5e-229 798.9 538 74.5
BcaB02g10755 Brassica carinata HOM05D004765 ORTHO05D005900 1.6e-228 796.2 567 71.4
Psat7g187280 Pisum sativum HOM05D004765 ORTHO05D005900 8.2e-228 793.9 523 76.1
SGA_v2.0_scaffold295G47508 Striga asiatica HOM05D004765 ORTHO05D005900 1.1e-227 793.5 569 70.3
CDE08G1681 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 2.4e-227 792.3 537 72.4
EL10Ac7g16329 Beta vulgaris HOM05D004765 ORTHO05D005900 3.2e-224 781.9 629 64.9
Aa31LG4G13830 Aethionema arabicum HOM05D004765 ORTHO05D005900 9.3e-224 780.4 533 73.4
Duzib168G0312 Durio zibethinus HOM05D004765 ORTHO05D005900 3.9e-222 775.0 563 71.2
Lj1A257T30 Lonicera japonica HOM05D004765 ORTHO05D005900 2.5e-221 772.3 452 86.3
HPP92_006357 Vanilla planifolia HOM05D004765 ORTHO05D005900 2.5e-221 772.3 553 70.2
Os08g0102100 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D005900 3.3e-221 771.9 553 68.5
Zm00001eb259900 Zea mays HOM05D004765 ORTHO05D005900 9.7e-213 743.8 554 66.4
FvH4_3g25670 Fragaria vesca HOM05D004765 ORTHO05D005900 1.1e-211 740.3 480 76.2
unitig_0.g1473 Utricularia gibba HOM05D004765 ORTHO05D005900 3.1e-211 738.8 577 65.5
Migut.D02363 Erythranthe guttata HOM05D004765 ORTHO05D005900 5.0e-209 731.5 484 75.2
Sc12g0004660 Simmondsia chinensis HOM05D004765 ORTHO05D005900 1.1e-200 703.7 474 73.8
CDE02G4012 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 2.3e-198 696.0 558 64.3
Zm00001eb198750 Zea mays HOM05D004765 ORTHO05D005900 1.8e-195 686.4 505 65.5
Mapoly0185s0020 Marchantia polymorpha HOM05D004765 ORTHO05D005900 7.0e-195 684.5 560 61.1
Pp3c12_11630 Physcomitrium patens HOM05D004765 ORTHO05D005900 3.5e-186 655.6 548 60.8
SMO141G0161 Selaginella moellendorffii HOM05D004765 ORTHO05D005900 7.5e-181 637.9 559 58.7
AUR62001526 Chenopodium quinoa HOM05D004765 ORTHO05D005900 4.5e-178 628.6 418 74.6
TAR633G2468 Trochodendron aralioides HOM05D004765 ORTHO05D005900 1.8e-171 606.7 365 82.7
Oeu014468.1 Olea europaea HOM05D004765 ORTHO05D005900 4.0e-166 589.0 359 82.7
BraA06t25618Z Brassica rapa HOM05D004765 ORTHO05D005900 3.5e-162 575.9 400 71.5
C03p67600 Brassica napus HOM05D004765 ORTHO05D005900 3.0e-161 572.8 402 70.6
BolSC21t60262H Brassica oleracea HOM05D004765 ORTHO05D005900 3.3e-160 569.3 402 70.4
CBR_g17963 Chara braunii HOM05D004765 ORTHO05D005900 8.6e-145 518.1 562 49.6
Sopen01g004890 Solanum pennellii HOM05D004765 ORTHO05D005900 1.2e-133 481.1 327 74.0
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05D004765 ORTHO05D005900 8.4e-132 474.9 534 45.9
VMungo1127G1239 Vigna mungo HOM05D004765 ORTHO05D005900 9.0e-126 454.9 269 83.3
CAN.G226.4 Capsicum annuum HOM05D004765 ORTHO05D005900 4.6e-122 442.6 336 67.9
SEGI_38882 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 2.0e-101 374.0 220 80.5
CAN.G30.1 Capsicum annuum HOM05D004765 ORTHO05D005900 3.5e-85 320.1 195 76.9
Migut.D02428 Erythranthe guttata HOM05D004765 ORTHO05D005900 1.0e-81 308.5 200 80.0
Psat4g157520 Pisum sativum HOM05D004765 ORTHO05D005900 6.1e-66 256.1 195 68.7
SEGI_20304 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 6.4e-55 219.5 139 79.1
CAN.G198.33 Capsicum annuum HOM05D004765 ORTHO05D005900 2.1e-50 204.5 152 65.8
CAN.G1211.3 Capsicum annuum HOM05D004765 ORTHO05D005900 2.3e-49 201.1 147 68.0
CAN.G79.6 Capsicum annuum HOM05D004765 ORTHO05D005900 7.8e-45 186.0 189 55.6
CAN.G79.7 Capsicum annuum HOM05D004765 ORTHO05D005900 1.5e-43 181.8 117 74.4
TAR633G0557 Trochodendron aralioides HOM05D004765 ORTHO05D005900 9.2e-30 136.0 82 87.8
Lj1C257T9 Lonicera japonica HOM05D004765 ORTHO05D030006 1.7e-28 131.7 116 62.1
VMungo0251G2550 Vigna mungo HOM05D000107 ORTHO05D000001 3.4e-24 117.5 115 53.9
Sc12g0004650 Simmondsia chinensis HOM05D004765 ORTHO05D030006 3.8e-23 114.0 78 71.8
SEGI_19690 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 4.2e-22 110.5 84 61.9
SEGI_24377 Sequoiadendron giganteum HOM05D004765 ORTHO05D030006 2.1e-21 108.2 86 59.3
QL04p027443 Quercus lobata HOM05D004765 ORTHO05D030006 5.6e-19 100.1 78 65.4
Os12g0509400 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D296799 1.5e-08 65.5 55 56.4
Pp3c10_16910 Physcomitrium patens HOM05D004765 ORTHO05D315325 2.2e-07 61.6 112 34.8
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 4.9e-07 60.5 352 23.3


User provided reference genes

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