Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022030 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 0.0e+00 1488.4 790 100.0
CSS0025023 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 0.0e+00 1278.5 703 97.7
CSS0015837 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 9.8e-272 940.3 784 67.2
Dinv40921 Davidia involucrata HOM05D005664 ORTHO05D006509 1.1e-259 900.2 785 64.3
Dinv19639 Davidia involucrata HOM05D005664 ORTHO05D006509 2.1e-258 896.0 778 64.4
Actinidia30345 Actinidia chinensis HOM05D005664 ORTHO05D006509 8.7e-252 874.0 796 62.1
vmacro11645 Vaccinium macrocarpon HOM05D005664 ORTHO05D006509 8.7e-252 874.0 807 60.6
Rhsim06G0235600 Rhododendron simsii HOM05D005664 ORTHO05D006509 7.3e-251 870.9 787 62.1
Hma1.2p1_0193F.1_g084390 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 6.3e-218 761.5 804 54.6
TAR627G1206 Trochodendron aralioides HOM05D005664 ORTHO05D006509 6.3e-194 681.8 800 52.1
TAR629G3046 Trochodendron aralioides HOM05D005664 ORTHO05D006509 8.0e-189 664.8 777 52.3
QL08p000429 Quercus lobata HOM05D005664 ORTHO05D006509 5.2e-180 635.6 816 48.4
Haze_09920 Corylus avellana HOM05D005664 ORTHO05D006509 5.9e-176 622.1 820 49.1
Ciclev10007600m.g Citrus clementina HOM05D005664 ORTHO05D006509 1.0e-175 621.3 803 47.4
Cfa016966 Carpinus fangiana HOM05D005664 ORTHO05D006509 5.0e-175 619.0 791 49.9
Nn1g09430 Nelumbo nucifera HOM05D005664 ORTHO05D006509 4.0e-172 609.4 927 42.4
Manes.01G007400 Manihot esculenta HOM05D005664 ORTHO05D006509 7.5e-171 605.1 803 48.3
Nn7g37452 Nelumbo nucifera HOM05D005664 ORTHO05D006509 3.7e-170 602.8 959 41.6
Atru.chr2.3903 Acer truncatum HOM05D005664 ORTHO05D006509 1.1e-169 601.3 806 47.1
Potri.001G472600 Populus trichocarpa HOM05D005664 ORTHO05D006509 9.2e-169 598.2 804 47.6
Cc05_g15770 Coffea canephora HOM05D005664 ORTHO05D006509 1.4e-164 584.3 813 46.9
Thecc.07G000900 Theobroma cacao HOM05D005664 ORTHO05D006509 5.8e-163 578.9 827 45.5
CiPaw.12G143100 Carya illinoinensis HOM05D005664 ORTHO05D006509 2.4e-161 573.5 790 47.0
Manes.01G007300 Manihot esculenta HOM05D005664 ORTHO05D006509 3.9e-159 566.2 802 47.0
Sabra11G0137600 Salix brachista HOM05D005664 ORTHO05D006509 3.3e-158 563.1 804 46.1
Potri.011G169200 Populus trichocarpa HOM05D005664 ORTHO05D006509 9.5e-158 561.6 804 46.4
Sabra16G0320800 Salix brachista HOM05D005664 ORTHO05D006509 3.6e-157 559.7 788 46.4
MD11G1047100 Malus domestica HOM05D005664 ORTHO05D006509 8.9e-156 555.1 826 44.6
Oeu015275.1 Olea europaea HOM05D005664 ORTHO05D006509 2.9e-154 550.1 804 44.9
Oeu052022.1 Olea europaea HOM05D005664 ORTHO05D006509 4.9e-154 549.3 807 45.1
Duzib170G1037 Durio zibethinus HOM05D005664 ORTHO05D006509 2.4e-153 547.0 826 44.1
Prupe.6G035900 Prunus persica HOM05D005664 ORTHO05D006509 9.5e-150 535.0 822 43.7
Hma1.2p1_0321F.1_g124370 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 9.9e-147 525.0 791 44.9
MSTRG.16129 Avicennia marina HOM05D005664 ORTHO05D006509 3.8e-146 523.1 804 43.4
MD03G1043600 Malus domestica HOM05D005664 ORTHO05D006509 1.9e-145 520.8 826 43.3
Cpa.g.sc12.60 Carica papaya HOM05D005664 ORTHO05D006509 9.2e-145 518.5 836 42.7
DCAR_016806 Daucus carota HOM05D005664 ORTHO05D006509 6.0e-144 515.8 788 43.5
Duzib268G0032 Durio zibethinus HOM05D005664 ORTHO05D006509 5.6e-142 509.2 823 43.1
MELO3C013227.2 Cucumis melo HOM05D005664 ORTHO05D006509 1.2e-141 508.1 799 42.7
ClCG09G021770 Citrullus lanatus HOM05D005664 ORTHO05D006509 2.1e-141 507.3 805 42.6
CsaV3_7G021290 Cucumis sativus L. HOM05D005664 ORTHO05D006509 1.4e-140 504.6 799 42.6
PGSC0003DMG400011270 Solanum tuberosum HOM05D005664 ORTHO05D006509 1.8e-140 504.2 802 42.6
Eucgr.F01983 Eucalyptus grandis HOM05D005664 ORTHO05D006509 5.2e-140 502.7 805 44.1
CAN.G492.59 Capsicum annuum HOM05D005664 ORTHO05D006509 1.2e-139 501.5 800 42.1
COL.COLO4_30921 Corchorus olitorius HOM05D005664 ORTHO05D006509 2.9e-138 496.9 795 43.4
Gorai.013G147600 Gossypium raimondii HOM05D005664 ORTHO05D006509 3.5e-136 490.0 827 42.0
Gohir.D13G131600 Gossypium hirsutum HOM05D005664 ORTHO05D006509 2.3e-135 487.3 827 41.7
Sopen10g001670 Solanum pennellii HOM05D005664 ORTHO05D006509 2.3e-135 487.3 800 42.0
Solyc10g005700.3 Solanum lycopersicum HOM05D005664 ORTHO05D006509 8.7e-135 485.3 800 42.2
Gohir.A13G128200 Gossypium hirsutum HOM05D005664 ORTHO05D006509 2.6e-131 473.8 809 41.9
TWI39G0285 Tripterygium wilfordii HOM05D005664 ORTHO05D006509 3.4e-131 473.4 809 41.9
MBI14_g10255_MAGBIO Magnolia biondii HOM05D005664 ORTHO05D006509 2.2e-130 470.7 805 40.0
Nitab4.5_0000611g0180 Nicotiana tabacum HOM05D005664 ORTHO05D006509 1.9e-129 467.6 792 41.5
SalBow8G4453 Salvia bowleyana HOM05D005664 ORTHO05D006509 2.4e-129 467.2 768 41.5
CAN.G8.46 Capsicum annuum HOM05D005664 ORTHO05D006509 2.7e-128 463.8 812 40.6
Sed0014853 Sechium edule HOM05D005664 ORTHO05D006509 1.0e-127 461.8 806 41.2
PGSC0003DMG400002313 Solanum tuberosum HOM05D005664 ORTHO05D006509 1.3e-125 454.9 802 40.4
FvH4_3g41520 Fragaria vesca HOM05D005664 ORTHO05D006509 1.1e-124 451.8 818 40.1
Nitab4.5_0001622g0140 Nicotiana tabacum HOM05D005664 ORTHO05D006509 2.4e-124 450.7 773 40.8
FAN16G2562 Fragaria x ananassa HOM05D005664 ORTHO05D006509 2.7e-120 437.2 815 39.8
Solyc12g017230.2 Solanum lycopersicum HOM05D005664 ORTHO05D006509 2.7e-120 437.2 812 39.7
Sopen12g008050 Solanum pennellii HOM05D005664 ORTHO05D006509 1.0e-119 435.3 811 39.2
FAN11G0133 Fragaria x ananassa HOM05D005664 ORTHO05D006509 1.3e-119 434.9 819 39.2
FAN25G3031 Fragaria x ananassa HOM05D005664 ORTHO05D006509 1.8e-119 434.5 823 39.5
Sed0021044 Sechium edule HOM05D005664 ORTHO05D006509 1.9e-118 431.0 784 40.6
Aqoxy1G04294 Aquilegia oxysepala HOM05D005664 ORTHO05D006509 1.1e-116 425.2 820 39.0
RcHm_v2.0_Chr5g0074471 Rosa chinensis HOM05D005664 ORTHO05D006509 1.1e-116 425.2 810 38.8
FAN21G3314 Fragaria x ananassa HOM05D005664 ORTHO05D006509 1.1e-113 415.2 803 39.2
PSO782G2174 Papaver somniferum HOM05D005664 ORTHO05D006509 1.4e-113 414.8 796 38.2
PSO063G4895 Papaver somniferum HOM05D005664 ORTHO05D006509 1.9e-113 414.5 796 38.1
Peaxi162Scf00006g00092 Petunia axillaris HOM05D005664 ORTHO05D006509 1.1e-110 405.2 801 38.0
Migut.M01578 Erythranthe guttata HOM05D005664 ORTHO05D006509 1.7e-106 391.3 794 37.2
Lsat_1_v5_gn_7_115861 Lactuca sativa HOM05D005664 ORTHO05D006509 1.8e-103 381.3 797 37.8
SGA_v2.0_scaffold186G40232 Striga asiatica HOM05D005664 ORTHO05D006509 5.1e-103 379.8 797 38.1
THA.LOC104813471 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 4.2e-97 360.1 838 35.7
unitig_37.g12212 Utricularia gibba HOM05D005664 ORTHO05D006509 7.9e-96 355.9 806 35.2
Lalb_Chr18g0048701 Lupinus albus HOM05D005664 ORTHO05D006509 5.7e-94 349.7 814 35.7
THA.LOC104813465 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 6.3e-93 346.3 837 34.8
Oeu062669.1 Olea europaea HOM05D005664 ORTHO05D006509 1.8e-92 344.7 783 36.4
HanXRQChr17g0546881 Helianthus annuus HOM05D005664 ORTHO05D006509 9.1e-92 342.4 803 35.2
Glyma.04G114300 Glycine max HOM05D005664 ORTHO05D006509 2.6e-91 340.9 790 36.8
arahy.Tifrunner.gnm1.ann1.C46LV5 Arachis hypogaea HOM05D005664 ORTHO05D006509 4.5e-91 340.1 810 36.5
Phvul.005G005100 Phaseolus vulgaris HOM05D005664 ORTHO05D006509 5.0e-90 336.7 783 37.3
VMungo1080G0452 Vigna mungo HOM05D005664 ORTHO05D006509 1.4e-89 335.1 789 38.5
Lj3g0022247 Lotus japonicus HOM05D005664 ORTHO05D006509 4.2e-89 333.6 804 34.7
CDE11G0421 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 9.4e-89 332.4 824 32.4
arahy.Tifrunner.gnm1.ann1.GFW533 Arachis hypogaea HOM05D005664 ORTHO05D006509 5.2e-87 326.6 794 36.1
Hund01929 Selenicereus undatus HOM05D005664 ORTHO05D006509 6.3e-85 319.7 749 33.4
TPR.G16700 Trifolium pratense HOM05D005664 ORTHO05D006509 8.2e-85 319.3 844 35.4
Glyma.06G321000 Glycine max HOM05D005664 ORTHO05D006509 7.7e-83 312.8 773 35.6
Lj1A901T36 Lonicera japonica HOM05D005664 ORTHO05D006509 1.0e-82 312.4 298 60.7
Lalb_Chr15g0079911 Lupinus albus HOM05D005664 ORTHO05D006509 1.7e-82 311.6 758 33.9
Carub.0007s1448 Capsella rubella HOM05D005664 ORTHO05D006509 3.2e-81 307.4 840 33.1
ECA236G2587 Erigeron canadensis HOM05D005664 ORTHO05D006509 7.2e-81 306.2 799 33.9
Medtr3g009540 Medicago truncatula HOM05D005664 ORTHO05D006509 2.1e-80 304.7 789 35.0
Sc03g0011800 Simmondsia chinensis HOM05D005664 ORTHO05D006509 2.1e-80 304.7 803 34.6
Ca_14130_v3 Cicer arietinum L. HOM05D005664 ORTHO05D006509 6.1e-80 303.1 752 33.8
AL7G26500 Arabidopsis lyrata HOM05D005664 ORTHO05D006509 1.4e-79 302.0 852 32.7
AT4G26450 Arabidopsis thaliana HOM05D005664 ORTHO05D006509 1.8e-79 301.6 850 33.4
AUR62015929 Chenopodium quinoa HOM05D005664 ORTHO05D006509 3.0e-79 300.8 748 34.0
AUR62040680 Chenopodium quinoa HOM05D005664 ORTHO05D006509 4.0e-79 300.4 764 33.5
EL10Ac4g07635 Beta vulgaris HOM05D005664 ORTHO05D006509 5.2e-79 300.1 769 33.3
Sp7g24360 Schrenkiella parvula HOM05D005664 ORTHO05D006509 3.3e-78 297.4 845 33.0
CDE05G2921 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 3.7e-77 293.9 805 30.3
Psat5g231360 Pisum sativum HOM05D005664 ORTHO05D006509 1.8e-76 291.6 848 33.1
Hund01927 Selenicereus undatus HOM05D005664 ORTHO05D006509 1.6e-75 288.5 738 31.8
CARHR234010 Cardamine hirsuta HOM05D005664 ORTHO05D006509 3.2e-73 280.8 856 32.5
Aa31LG5G11790 Aethionema arabicum HOM05D005664 ORTHO05D006509 4.2e-73 280.4 831 31.2
Thhalv10024531m.g Eutrema salsugineum HOM05D005664 ORTHO05D006509 2.7e-72 277.7 864 30.9
Ah.04g166380 Amaranthus hybridus HOM05D005664 ORTHO05D006509 5.5e-65 253.4 746 31.1
BcaC06g32747 Brassica carinata HOM05D005664 ORTHO05D006509 2.6e-62 244.6 855 29.5
BolC1t02167H Brassica oleracea HOM05D005664 ORTHO05D006509 2.2e-61 241.5 835 31.1
A03p56710 Brassica napus HOM05D005664 ORTHO05D006509 6.3e-61 240.0 852 29.8
BraA03t14741Z Brassica rapa HOM05D005664 ORTHO05D006509 6.3e-61 240.0 852 29.8
CANSAT11G1251 Cannabis sativa HOM05D005664 ORTHO05D006509 1.8e-60 238.4 775 31.2
C01p22360 Brassica napus HOM05D005664 ORTHO05D006509 2.4e-60 238.0 830 31.1
MSTRG.13052 Avicennia marina HOM05D005664 ORTHO05D006509 4.1e-60 237.3 609 35.0
A01p17690 Brassica napus HOM05D005664 ORTHO05D006509 4.1e-60 237.3 841 31.0
GSVIVG01014850001 Vitis vinifera HOM05D005664 ORTHO05D006509 2.0e-59 235.0 167 71.9
BraA01t01725Z Brassica rapa HOM05D005664 ORTHO05D006509 3.5e-59 234.2 841 31.3
BcaC09g50709 Brassica carinata HOM05D005664 ORTHO05D006509 5.9e-59 233.4 831 30.9
C07p54910 Brassica napus HOM05D005664 ORTHO05D006509 1.2e-56 225.7 852 28.9
BolC7t45979H Brassica oleracea HOM05D005664 ORTHO05D006509 1.2e-56 225.7 852 28.9
unitig_46.g18526 Utricularia gibba HOM05D005664 ORTHO05D006509 3.0e-55 221.1 708 31.2
Ah.06g181030 Amaranthus hybridus HOM05D000037 ORTHO05D006509 3.7e-53 214.2 785 28.4
Lj1A901G38 Lonicera japonica HOM05D005664 ORTHO05D006509 9.2e-44 183.0 129 68.2
Migut.H01706 Erythranthe guttata HOM05D005664 ORTHO05D006509 1.7e-42 178.7 817 28.9
HPP92_019365 Vanilla planifolia HOM05D005664 ORTHO05D006509 8.1e-40 169.9 772 26.4
ATR0021G035 Amborella trichopoda HOM05D005664 ORTHO05D006509 7.8e-35 153.3 903 27.6
Zm00001eb422560 Zea mays HOM05D019841 ORTHO05D006509 1.4e-23 115.9 838 24.0
Zm00001eb082760 Zea mays HOM05D019841 ORTHO05D006509 2.6e-22 111.7 837 24.3
MSTRG.7045 Avicennia marina HOM05D005664 ORTHO05D006509 2.3e-18 98.6 97 53.6
SEGI_32826 Sequoiadendron giganteum HOM05D005664 ORTHO05D006509 3.9e-18 97.8 902 23.8
Os04g0431000 Oryza sativa ssp. japonica HOM05D019841 ORTHO05D006509 7.3e-17 93.6 230 34.8
HPP92_028056 Vanilla planifolia HOM05D005664 ORTHO05D006509 4.9e-13 80.9 227 33.5
Os02g0550000 Oryza sativa ssp. japonica HOM05D019841 ORTHO05D037008 6.4e-13 80.5 800 22.4
Actinidia33104 Actinidia chinensis HOM05D005664 ORTHO05D006509 1.1e-12 79.7 46 80.4
Psat6g196680 Pisum sativum HOM05D005664 ORTHO05D006509 1.9e-09 68.9 120 37.5
Zm00001eb243360 Zea mays HOM05D019841 ORTHO05D037008 1.8e-07 62.4 143 32.9
AUR62017309 Chenopodium quinoa HOM05D005664 ORTHO05D006509 6.9e-07 60.5 89 41.6


User provided reference genes

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