Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022021 Camellia sinensis var. sinensis HOM05D004638 ORTHO05D005443 1.5e-124 449.9 294 100.0
Lj2C17T3 Lonicera japonica HOM05D004638 ORTHO05D005443 7.3e-63 245.0 283 53.7
Dinv31214 Davidia involucrata HOM05D001005 ORTHO05D000836 2.4e-61 240.0 260 62.7
Atru.chr4.1922 Acer truncatum HOM05D004638 ORTHO05D005443 9.9e-60 234.6 298 54.4
TWI53G1292 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 1.9e-58 230.3 292 55.5
Hma1.2p1_0751F.1_g212710 Hydrangea macrophylla HOM05D004638 ORTHO05D005443 1.8e-56 223.8 280 53.2
Atru.chr2.74 Acer truncatum HOM05D004638 ORTHO05D005443 2.3e-56 223.4 296 56.4
Duzib052G1194 Durio zibethinus HOM05D004638 ORTHO05D005443 1.1e-55 221.1 295 49.2
Gohir.D09G231600 Gossypium hirsutum HOM05D004638 ORTHO05D005443 1.1e-55 221.1 291 53.6
Gorai.006G254300 Gossypium raimondii HOM05D004638 ORTHO05D005443 1.1e-55 221.1 291 53.6
Thecc.04G268000 Theobroma cacao HOM05D004638 ORTHO05D005443 1.1e-55 221.1 293 49.8
Manes.15G046900 Manihot esculenta HOM05D004638 ORTHO05D005443 3.3e-55 219.5 292 56.5
Gohir.A09G230500 Gossypium hirsutum HOM05D004638 ORTHO05D005443 1.3e-54 217.6 292 54.1
QL06p021792 Quercus lobata HOM05D004638 ORTHO05D005443 2.1e-54 216.9 292 49.3
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 1.4e-53 214.2 269 58.0
COL.COLO4_15993 Corchorus olitorius HOM05D004638 ORTHO05D005443 2.4e-53 213.4 293 51.5
ClCG06G018050 Citrullus lanatus HOM05D004638 ORTHO05D005443 3.1e-53 213.0 294 48.6
CsaV3_1G000420 Cucumis sativus L. HOM05D004638 ORTHO05D005443 3.1e-53 213.0 275 49.5
THA.LOC104800549 Tarenaya hassleriana HOM05D004638 ORTHO05D005443 4.0e-53 212.6 303 48.2
TWI73G0168 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 5.3e-53 212.2 267 61.8
MELO3C026193.2 Cucumis melo HOM05D004638 ORTHO05D005443 9.0e-53 211.5 277 48.7
Duzib212G0972 Durio zibethinus HOM05D004638 ORTHO05D005443 1.2e-52 211.1 296 47.0
TAR623G0129 Trochodendron aralioides HOM05D004638 ORTHO05D005443 1.2e-52 211.1 264 50.4
Thhalv10013953m.g Eutrema salsugineum HOM05D004638 ORTHO05D005443 5.8e-52 208.8 298 47.7
ClCG06G007330 Citrullus lanatus HOM05D004638 ORTHO05D005443 1.7e-51 207.2 277 52.3
Haze_15400 Corylus avellana HOM05D004638 ORTHO05D005443 1.7e-51 207.2 277 51.3
Haze_15402 Corylus avellana HOM05D004638 ORTHO05D005443 1.7e-51 207.2 277 51.3
DCAR_007662 Daucus carota HOM05D004638 ORTHO05D005443 3.8e-51 206.1 264 50.0
Sp6g37620 Schrenkiella parvula HOM05D004638 ORTHO05D005443 3.8e-51 206.1 298 47.7
Aa31LG11G6060 Aethionema arabicum HOM05D004638 ORTHO05D005443 4.9e-51 205.7 298 46.6
AL6G15050 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 4.9e-51 205.7 289 46.7
CiPaw.01G176300 Carya illinoinensis HOM05D004638 ORTHO05D005443 4.9e-51 205.7 297 45.8
Sed0011634 Sechium edule HOM05D004638 ORTHO05D005443 1.4e-50 204.1 267 53.9
Ciclev10025979m.g Citrus clementina HOM05D004638 ORTHO05D005443 3.2e-50 203.0 293 52.2
CARHR208030 Cardamine hirsuta HOM05D004638 ORTHO05D005443 1.2e-49 201.1 267 48.7
AT5G05210 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 1.6e-49 200.7 223 52.5
Cfa014805 Carpinus fangiana HOM05D004638 ORTHO05D005443 1.6e-49 200.7 293 45.4
MELO3C023050.2 Cucumis melo HOM05D004638 ORTHO05D005443 2.7e-49 199.9 293 50.2
Carub.0006s0414 Capsella rubella HOM05D004638 ORTHO05D005443 1.3e-48 197.6 317 44.2
BcaB05g21727 Brassica carinata HOM05D004638 ORTHO05D005443 1.8e-48 197.2 297 45.8
Prupe.1G051000 Prunus persica HOM05D004638 ORTHO05D005443 1.8e-48 197.2 268 53.4
CsaV3_2G012340 Cucumis sativus L. HOM05D004638 ORTHO05D005443 3.0e-48 196.4 293 49.8
BraA02t04837Z Brassica rapa HOM05D004638 ORTHO05D005443 3.9e-48 196.1 305 46.2
BcaB01g05944 Brassica carinata HOM05D004638 ORTHO05D005443 5.1e-48 195.7 297 46.5
Ah.16g102130 Amaranthus hybridus HOM05D004638 ORTHO05D005443 6.7e-48 195.3 309 46.9
Phvul.003G100800 Phaseolus vulgaris HOM05D004638 ORTHO05D005443 1.9e-47 193.7 273 52.0
C02p02210 Brassica napus HOM05D004638 ORTHO05D005443 2.5e-47 193.4 298 45.3
BolC3t12811H Brassica oleracea HOM05D004638 ORTHO05D005443 2.5e-47 193.4 298 45.6
MD16G1229100 Malus domestica HOM05D004638 ORTHO05D005443 2.5e-47 193.4 276 50.4
Psat2g177000 Pisum sativum HOM05D004638 ORTHO05D005443 3.3e-47 193.0 275 51.6
C03p02590 Brassica napus HOM05D004638 ORTHO05D005443 4.3e-47 192.6 304 44.7
RcHm_v2.0_Chr4g0395981 Rosa chinensis HOM05D004638 ORTHO05D005443 4.3e-47 192.6 297 50.2
BcaC03g13151 Brassica carinata HOM05D004638 ORTHO05D005443 7.4e-47 191.8 302 44.7
BolC2t06190H Brassica oleracea HOM05D004638 ORTHO05D005443 7.4e-47 191.8 302 44.7
Glyma.19G074500 Glycine max HOM05D004638 ORTHO05D005443 7.4e-47 191.8 278 46.0
PGR142G1578 Punica granatum HOM05D004638 ORTHO05D005443 7.4e-47 191.8 297 44.1
GSVIVG01027946001 Vitis vinifera HOM05D004638 ORTHO05D005443 7.4e-47 191.8 290 47.6
BcaB01g05717 Brassica carinata HOM05D004638 ORTHO05D005443 9.6e-47 191.4 304 44.1
A03p02250 Brassica napus HOM05D004638 ORTHO05D005443 1.3e-46 191.0 300 45.3
BraA03t09589Z Brassica rapa HOM05D004638 ORTHO05D005443 1.3e-46 191.0 300 45.3
Potri.010G064100 Populus trichocarpa HOM05D004638 ORTHO05D005443 2.8e-46 189.9 269 52.0
FvH4_4g05060 Fragaria vesca HOM05D004638 ORTHO05D005443 3.7e-46 189.5 296 49.0
FAN12G0885 Fragaria x ananassa HOM05D004638 ORTHO05D005443 3.7e-46 189.5 296 49.0
Medtr5g012820 Medicago truncatula HOM05D004638 ORTHO05D005443 3.7e-46 189.5 301 48.5
FAN17G1367 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.4e-45 187.6 296 45.3
VMungo1215G0894 Vigna mungo HOM05D004638 ORTHO05D005443 1.4e-45 187.6 275 52.0
FAN15G0747 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.8e-45 187.2 299 48.2
FAN22G0870 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.8e-45 187.2 296 50.0
FAN24G1523 Fragaria x ananassa HOM05D004638 ORTHO05D005443 3.1e-45 186.4 296 44.9
HPP92_027401 Vanilla planifolia HOM05D004638 ORTHO05D005443 6.9e-45 185.3 280 46.4
FvH4_2g18960 Fragaria vesca HOM05D004638 ORTHO05D005443 1.5e-44 184.1 298 44.3
TPR.G7963 Trifolium pratense HOM05D004638 ORTHO05D005443 5.8e-44 182.2 262 46.6
TPR.G18128 Trifolium pratense HOM05D004638 ORTHO05D005443 1.7e-43 180.6 232 52.6
Cpa.g.c29962.1 Carica papaya HOM05D004638 ORTHO05D005443 8.4e-43 178.3 295 44.1
Lalb_Chr11g0063191 Lupinus albus HOM05D004638 ORTHO05D005443 8.4e-43 178.3 265 47.9
Eucgr.H01383 Eucalyptus grandis HOM05D004638 ORTHO05D005443 1.1e-42 177.9 267 52.1
Haze_11486 Corylus avellana HOM05D004638 ORTHO05D005443 9.3e-42 174.9 294 43.9
EL10Ac2g04652 Beta vulgaris HOM05D004638 ORTHO05D005443 1.6e-41 174.1 305 47.5
CiPaw.02G105500 Carya illinoinensis HOM05D004638 ORTHO05D005443 1.6e-41 174.1 288 47.9
CDE07G1349 Ceratophyllum demersum HOM05D002308 ORTHO05D005297 2.1e-41 173.7 161 58.4
Lsat_1_v5_gn_9_30280 Lactuca sativa HOM05D004638 ORTHO05D005443 7.9e-41 171.8 282 54.6
CANSAT01G0932 Cannabis sativa HOM05D004638 ORTHO05D005443 1.8e-40 170.6 271 48.7
CANSAT01G3035 Cannabis sativa HOM05D004638 ORTHO05D005443 1.8e-40 170.6 271 48.7
HanXRQChr11g0320631 Helianthus annuus HOM05D004638 ORTHO05D005443 3.0e-40 169.9 280 56.4
SGA_v2.0_scaffold21G09643 Striga asiatica HOM05D004638 ORTHO05D005443 3.9e-40 169.5 266 45.1
Lalb_Chr08g0244981 Lupinus albus HOM05D004638 ORTHO05D005443 5.1e-40 169.1 266 48.1
Glyma.05G075900 Glycine max HOM05D004638 ORTHO05D005443 8.7e-40 168.3 275 48.4
ATR0051G063 Amborella trichopoda HOM05D004638 ORTHO05D005443 3.3e-39 166.4 266 49.2
Aqoxy5G00949 Aquilegia oxysepala HOM05D004638 ORTHO05D005443 3.3e-39 166.4 285 46.7
Sc06g0001700 Simmondsia chinensis HOM05D004638 ORTHO05D005443 5.7e-39 165.6 282 45.4
Potri.008G173300 Populus trichocarpa HOM05D004638 ORTHO05D005443 1.6e-38 164.1 269 48.7
arahy.Tifrunner.gnm1.ann1.L9DXTM Arachis hypogaea HOM05D004638 ORTHO05D005443 2.8e-38 163.3 268 54.5
PGSC0003DMG400013656 Solanum tuberosum HOM05D004638 ORTHO05D005443 2.8e-38 163.3 293 45.4
ECA246G4403 Erigeron canadensis HOM05D004638 ORTHO05D005443 3.7e-38 162.9 287 46.3
Solyc02g082130.2 Solanum lycopersicum HOM05D004638 ORTHO05D005443 3.7e-38 162.9 295 45.1
Sopen02g026790 Solanum pennellii HOM05D004638 ORTHO05D005443 3.7e-38 162.9 294 44.6
Sabra10G0042900 Salix brachista HOM05D004638 ORTHO05D005443 4.8e-38 162.5 267 53.6
HanXRQChr14g0438771 Helianthus annuus HOM05D004638 ORTHO05D005443 1.4e-37 161.0 282 55.3
Ca_03509_v3 Cicer arietinum L. HOM05D004638 ORTHO05D005443 3.1e-37 159.8 270 44.4
SalBow5G3921 Salvia bowleyana HOM05D004638 ORTHO05D005443 5.3e-37 159.1 266 46.2
Oeu017919.1 Olea europaea HOM05D004638 ORTHO05D005443 3.4e-36 156.4 313 43.1
Actinidia22435 Actinidia chinensis HOM05D004638 ORTHO05D005443 4.5e-36 156.0 133 68.4
Migut.L01893 Erythranthe guttata HOM05D004638 ORTHO05D005443 7.6e-36 155.2 273 49.1
CAN.G809.17 Capsicum annuum HOM05D004638 ORTHO05D005443 5.5e-34 149.1 292 55.8
CDE06G2325 Ceratophyllum demersum HOM05D004638 ORTHO05D005443 9.3e-34 148.3 244 40.6
Peaxi162Scf00048g00171 Petunia axillaris HOM05D004638 ORTHO05D005443 1.6e-33 147.5 283 41.7
Nitab4.5_0000614g0010 Nicotiana tabacum HOM05D004638 ORTHO05D005443 1.3e-32 144.4 301 40.2
Nitab4.5_0001815g0110 Nicotiana tabacum HOM05D004638 ORTHO05D005443 3.9e-32 142.9 302 37.1
MSTRG.13923 Avicennia marina HOM05D004638 ORTHO05D005443 1.9e-31 140.6 284 43.7
MSTRG.26536 Avicennia marina HOM05D004638 ORTHO05D005443 1.9e-31 140.6 284 43.7
Mapoly0122s0042 Marchantia polymorpha HOM05D004638 ORTHO05D005443 3.3e-31 139.8 294 37.1
SGA_v2.0_scaffold41G15829 Striga asiatica HOM05D004638 ORTHO05D005443 4.3e-31 139.4 274 42.0
Atru.chr4.1888 Acer truncatum HOM05D004638 ORTHO05D005443 1.1e-29 134.8 125 59.2
AT2G27750 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 1.8e-29 134.0 143 52.4
MD13G1224300 Malus domestica HOM05D004638 ORTHO05D005443 2.6e-28 130.2 227 45.8
Zm00001eb248040 Zea mays HOM05D004638 ORTHO05D005443 1.7e-27 127.5 295 42.0
AUR62014564 Chenopodium quinoa HOM05D004638 ORTHO05D005443 1.4e-26 124.4 162 47.5
Carub.0004s0850 Capsella rubella HOM05D004638 ORTHO05D005443 1.9e-26 124.0 145 50.3
Lj4g0009002 Lotus japonicus HOM05D004638 ORTHO05D005443 7.2e-26 122.1 265 38.1
arahy.Tifrunner.gnm1.ann1.XHZZ6B Arachis hypogaea HOM05D004638 ORTHO05D005443 4.6e-25 119.4 257 39.7
AUR62039396 Chenopodium quinoa HOM05D004638 ORTHO05D005443 6.7e-24 115.5 109 56.0
Cc04_g09510 Coffea canephora HOM05D004638 ORTHO05D005443 3.3e-23 113.2 165 46.7
AL4G22550 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 5.7e-23 112.5 123 50.4
COL.COLO4_32263 Corchorus olitorius HOM05D004638 ORTHO05D005443 7.4e-23 112.1 293 37.5
SEGI_31736 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 1.7e-22 110.9 274 34.3
Medtr2g079000 Medicago truncatula HOM05D004638 ORTHO05D005443 5.3e-21 105.9 127 46.5
Actinidia16422 Actinidia chinensis HOM05D004638 ORTHO05D005443 1.5e-20 104.4 109 63.3
Oeu016931.1 Olea europaea HOM05D004638 ORTHO05D005443 5.0e-19 99.4 252 36.9
Pp3c8_4010 Physcomitrium patens HOM05D004638 ORTHO05D005443 5.0e-19 99.4 303 33.0
unitig_22.g5967 Utricularia gibba HOM05D004638 ORTHO05D005443 8.5e-19 98.6 89 58.4
Actinidia06751 Actinidia chinensis HOM05D004638 ORTHO05D005443 2.5e-18 97.1 208 50.0
Lj3g0004611 Lotus japonicus HOM05D004638 ORTHO05D005443 7.2e-18 95.5 241 34.9
Os05g0372200 Oryza sativa ssp. japonica HOM05D004638 ORTHO05D005443 2.7e-17 93.6 229 45.4
SMO119G0466 Selaginella moellendorffii HOM05D004638 ORTHO05D005443 1.8e-16 90.9 295 31.2
AagrBONN_evm.TU.Sc2ySwM_368.887 Anthoceros agrestis HOM05D004638 ORTHO05D005443 1.1e-15 88.2 272 31.2
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 7.4e-15 85.5 161 37.3
MCO04G484 Micromonas commoda HOM05D004638 ORTHO05D005443 4.5e-12 76.3 166 33.7
Nn4g24624 Nelumbo nucifera HOM05D004638 ORTHO05D005443 6.5e-11 72.4 173 36.4
Nitab4.5_0000047g0220 Nicotiana tabacum HOM05D004638 ORTHO05D005443 1.1e-10 71.6 90 47.8
Manes.12G121700 Manihot esculenta HOM05D004638 ORTHO05D005443 1.5e-10 71.2 195 47.2
Lj3g0021975 Lotus japonicus HOM05D004638 ORTHO05D005443 2.7e-09 67.0 120 40.0
Medtr2g079040 Medicago truncatula HOM05D004638 ORTHO05D005443 5.2e-08 62.8 52 59.6
Nitab4.5_0000047g0240 Nicotiana tabacum HOM05D004638 ORTHO05D005443 3.3e-07 60.1 74 52.7
Lsat_1_v5_gn_9_30260 Lactuca sativa HOM05D004638 ORTHO05D005443 7.5e-07 58.9 60 55.0
Cre02.g082300 Chlamydomonas reinhardtii HOM05D004638 ORTHO05D005443 2.8e-06 57.0 104 36.5


User provided reference genes

Program Settings