Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022011 Camellia sinensis var. sinensis HOM05D001638 ORTHO05D005197 2.7e-201 705.3 402 100.0
vmacro16776 Vaccinium macrocarpon HOM05D001638 ORTHO05D005197 1.5e-162 576.6 402 80.8
Actinidia40391 Actinidia chinensis HOM05D001638 ORTHO05D005197 5.5e-162 574.7 402 79.6
Rhsim07G0034600 Rhododendron simsii HOM05D001638 ORTHO05D005197 2.7e-156 555.8 402 80.3
Dinv44076 Davidia involucrata HOM05D001638 ORTHO05D005197 1.1e-149 533.9 400 78.8
Dinv43635 Davidia involucrata HOM05D001638 ORTHO05D005197 1.8e-141 506.5 333 79.6
Ciclev10015475m.g Citrus clementina HOM05D001638 ORTHO05D005197 7.5e-135 484.6 402 70.4
TAR629G0136 Trochodendron aralioides HOM05D001638 ORTHO05D005197 6.4e-134 481.5 345 74.2
Gohir.A13G033800 Gossypium hirsutum HOM05D001638 ORTHO05D005197 5.0e-131 471.9 326 74.2
Eucgr.F04452 Eucalyptus grandis HOM05D001638 ORTHO05D005197 6.6e-131 471.5 333 71.8
GSVIVG01018246001 Vitis vinifera HOM05D001638 ORTHO05D005197 5.6e-130 468.4 326 75.5
CiPaw.14G021800 Carya illinoinensis HOM05D001638 ORTHO05D005197 7.3e-130 468.0 334 72.8
Manes.01G272000 Manihot esculenta HOM05D001638 ORTHO05D005197 1.2e-129 467.2 334 73.1
Nn6g33853 Nelumbo nucifera HOM05D001638 ORTHO05D005197 3.6e-129 465.7 335 73.1
Duzib132G0757 Durio zibethinus HOM05D001638 ORTHO05D005197 3.1e-128 462.6 329 74.2
SGA_v2.0_scaffold5G02962 Striga asiatica HOM05D001638 ORTHO05D005197 3.1e-128 462.6 334 71.3
Thecc.02G084000 Theobroma cacao HOM05D001638 ORTHO05D005197 6.8e-128 461.5 326 73.9
Potri.019G085100 Populus trichocarpa HOM05D001638 ORTHO05D005197 1.5e-127 460.3 321 73.2
MSTRG.12501 Avicennia marina HOM05D001638 ORTHO05D005197 3.4e-127 459.1 334 69.8
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 5.8e-127 458.4 358 69.8
Gorai.013G036600 Gossypium raimondii HOM05D001638 ORTHO05D005197 7.5e-127 458.0 319 73.4
PGR031G2794 Punica granatum HOM05D001638 ORTHO05D005197 2.9e-126 456.1 326 72.7
Cfa011091 Carpinus fangiana HOM05D001638 ORTHO05D005197 4.9e-126 455.3 326 73.9
TAR636G3630 Trochodendron aralioides HOM05D001638 ORTHO05D005197 8.3e-126 454.5 325 74.5
CANSAT56G0649 Cannabis sativa HOM05D001638 ORTHO05D005197 2.4e-125 453.0 324 70.7
Gohir.D13G032100 Gossypium hirsutum HOM05D001638 ORTHO05D005197 3.2e-125 452.6 314 73.6
arahy.Tifrunner.gnm1.ann1.9JI82G Arachis hypogaea HOM05D001638 ORTHO05D005197 1.2e-124 450.7 325 72.9
MBI04_g36329_MAGBIO Magnolia biondii HOM05D001638 ORTHO05D005197 2.1e-124 449.9 430 60.0
Cc02_g24880 Coffea canephora HOM05D001638 ORTHO05D005197 3.5e-124 449.1 413 65.1
MD02G1217000 Malus domestica HOM05D001638 ORTHO05D005197 4.6e-124 448.7 336 71.1
DCAR_023354 Daucus carota HOM05D001638 ORTHO05D005197 1.7e-123 446.8 352 67.3
Phvul.008G045000 Phaseolus vulgaris HOM05D001638 ORTHO05D005197 1.7e-123 446.8 396 66.9
arahy.Tifrunner.gnm1.ann1.MQ0E05 Arachis hypogaea HOM05D001638 ORTHO05D005197 2.3e-123 446.4 325 72.0
Prupe.2G127200 Prunus persica HOM05D001638 ORTHO05D005197 3.0e-123 446.0 342 70.2
Sc02g0002980 Simmondsia chinensis HOM05D001638 ORTHO05D005197 3.9e-123 445.7 404 62.1
Migut.N01781 Erythranthe guttata HOM05D001638 ORTHO05D005197 6.6e-123 444.9 336 68.5
Medtr7g007890 Medicago truncatula HOM05D001638 ORTHO05D005197 6.6e-123 444.9 330 71.2
COL.COLO4_25944 Corchorus olitorius HOM05D001638 ORTHO05D005197 1.9e-122 443.4 320 73.1
Ca_04112_v3 Cicer arietinum L. HOM05D001638 ORTHO05D005197 5.6e-122 441.8 325 72.3
Medtr5g064850 Medicago truncatula HOM05D001638 ORTHO05D005197 7.3e-122 441.4 330 70.6
HanXRQChr14g0428901 Helianthus annuus HOM05D001638 ORTHO05D005197 1.6e-121 440.3 331 69.2
Glyma.18G253900 Glycine max HOM05D001638 ORTHO05D005197 2.1e-121 439.9 325 72.9
VMungo1383G3402 Vigna mungo HOM05D001638 ORTHO05D005197 4.7e-121 438.7 397 63.0
Glyma.09G089400 Glycine max HOM05D001638 ORTHO05D005197 4.0e-120 435.6 325 71.4
Thhalv10004255m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 5.2e-120 435.3 330 68.2
LjContig00564g0006049 Lotus japonicus HOM05D001638 ORTHO05D005197 8.9e-120 434.5 327 70.3
Sp2g24540 Schrenkiella parvula HOM05D001638 ORTHO05D005197 1.5e-119 433.7 326 69.0
BraA03t13813Z Brassica rapa HOM05D001638 ORTHO05D005197 3.4e-119 432.6 330 68.2
Psat0s3614g0040 Pisum sativum HOM05D001638 ORTHO05D005197 3.4e-119 432.6 327 71.3
HanXRQChr01g0007441 Helianthus annuus HOM05D001638 ORTHO05D005197 9.9e-119 431.0 400 63.5
BcaC04g23457 Brassica carinata HOM05D001638 ORTHO05D005197 1.3e-118 430.6 329 67.5
MELO3C005976.2 Cucumis melo HOM05D001638 ORTHO05D005197 2.2e-118 429.9 403 68.0
A09p07280 Brassica napus HOM05D001638 ORTHO05D005197 2.9e-118 429.5 327 67.9
C07p44980 Brassica napus HOM05D001638 ORTHO05D005197 2.9e-118 429.5 328 67.7
A03p46940 Brassica napus HOM05D001638 ORTHO05D005197 3.8e-118 429.1 326 68.4
TWI23G0567 Tripterygium wilfordii HOM05D001638 ORTHO05D005197 8.4e-118 427.9 332 67.8
C09p08140 Brassica napus HOM05D001638 ORTHO05D005197 3.2e-117 426.0 329 67.2
BolC9t53726H Brassica oleracea HOM05D001638 ORTHO05D005197 3.2e-117 426.0 329 67.2
RcHm_v2.0_Chr1g0346971 Rosa chinensis HOM05D001638 ORTHO05D005197 3.2e-117 426.0 409 66.7
QL04p031108 Quercus lobata HOM05D001638 ORTHO05D005197 9.2e-117 424.5 408 59.8
BolC7t45021H Brassica oleracea HOM05D001638 ORTHO05D005197 1.6e-116 423.7 324 67.6
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 2.1e-116 423.3 368 63.0
AT5G61330 Arabidopsis thaliana HOM05D001638 ORTHO05D005197 2.7e-116 422.9 330 65.5
PSO541G3735 Papaver somniferum HOM05D001638 ORTHO05D005197 2.7e-116 422.9 312 69.6
Lsat_1_v5_gn_4_15080 Lactuca sativa HOM05D001638 ORTHO05D005197 4.6e-116 422.2 395 64.8
BraA09t36377Z Brassica rapa HOM05D001638 ORTHO05D005197 1.0e-115 421.0 323 66.9
FAN10G1788 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.0e-115 421.0 408 63.7
Solyc01g090470.3 Solanum lycopersicum HOM05D001638 ORTHO05D005197 1.3e-115 420.6 333 68.8
Sopen01g036260 Solanum pennellii HOM05D001638 ORTHO05D005197 1.3e-115 420.6 333 69.1
CsaV3_3G007540 Cucumis sativus L. HOM05D001638 ORTHO05D005197 1.7e-115 420.2 403 66.3
Lalb_Chr19g0127051 Lupinus albus HOM05D001638 ORTHO05D005197 1.7e-115 420.2 422 63.5
CARHR275090 Cardamine hirsuta HOM05D001638 ORTHO05D005197 2.3e-115 419.9 327 66.1
BcaB04g19906 Brassica carinata HOM05D001638 ORTHO05D005197 3.0e-115 419.5 334 65.3
FAN10G2339 Fragaria x ananassa HOM05D001638 ORTHO05D005197 5.1e-115 418.7 408 63.7
THA.LOC104818326 Tarenaya hassleriana HOM05D001638 ORTHO05D005197 6.6e-115 418.3 327 67.3
AL8G37990 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 8.6e-115 417.9 326 66.0
Peaxi162Scf00392g00227 Petunia axillaris HOM05D001638 ORTHO05D005197 1.1e-114 417.5 288 75.0
Carub.0008s2200 Capsella rubella HOM05D001638 ORTHO05D005197 1.5e-114 417.2 331 65.0
Sed0004454 Sechium edule HOM05D001638 ORTHO05D005197 2.5e-114 416.4 407 60.0
PSO170G6800 Papaver somniferum HOM05D001638 ORTHO05D005197 3.3e-114 416.0 301 71.1
AUR62023428 Chenopodium quinoa HOM05D001638 ORTHO05D005197 1.2e-113 414.1 410 62.9
FvH4_7g09810 Fragaria vesca HOM05D001638 ORTHO05D005197 1.6e-113 413.7 413 63.7
PGSC0003DMG400026041 Solanum tuberosum HOM05D001638 ORTHO05D005197 8.1e-113 411.4 417 61.2
Aqoxy7G00848 Aquilegia oxysepala HOM05D001638 ORTHO05D005197 3.1e-112 409.5 343 63.6
BcaC06g33229 Brassica carinata HOM05D001638 ORTHO05D005197 3.1e-112 409.5 331 65.3
FAN01G1872 Fragaria x ananassa HOM05D001638 ORTHO05D005197 8.9e-112 407.9 333 65.2
Ah.03g133920 Amaranthus hybridus HOM05D001638 ORTHO05D005197 1.5e-111 407.1 333 64.0
CAN.G362.16 Capsicum annuum HOM05D001638 ORTHO05D005197 2.6e-111 406.4 286 74.5
unitig_37.g13004 Utricularia gibba HOM05D000186 ORTHO05D001124 5.8e-111 405.2 399 57.6
EL10Ac1g00784 Beta vulgaris HOM05D001638 ORTHO05D005197 1.3e-110 404.1 410 61.7
PSO017G3357 Papaver somniferum HOM05D001638 ORTHO05D005197 1.3e-110 404.1 293 71.3
SalBow6G5432 Salvia bowleyana HOM05D001638 ORTHO05D005197 1.3e-110 404.1 431 61.7
ClCG05G000380 Citrullus lanatus HOM05D001638 ORTHO05D005197 4.2e-109 399.1 414 62.6
DCAR_029773 Daucus carota HOM05D001638 ORTHO05D005197 4.2e-109 399.1 283 72.1
Aa31LG11G2080 Aethionema arabicum HOM05D001638 ORTHO05D005197 3.5e-108 396.0 309 66.7
Lsat_1_v5_gn_4_70960 Lactuca sativa HOM05D001638 ORTHO05D005197 3.0e-107 392.9 406 58.9
TPR.G11809 Trifolium pratense HOM05D001638 ORTHO05D005197 1.5e-106 390.6 359 61.6
Hund17077 Selenicereus undatus HOM05D001638 ORTHO05D005197 2.5e-106 389.8 454 56.6
CDE03G0227 Ceratophyllum demersum HOM05D001638 ORTHO05D005197 2.8e-105 386.3 335 62.4
Os01g0526200 Oryza sativa ssp. japonica HOM05D001638 ORTHO05D005197 9.0e-104 381.3 325 61.2
ATR0057G068 Amborella trichopoda HOM05D001638 ORTHO05D005197 3.9e-99 365.9 308 63.3
FAN06G3795 Fragaria x ananassa HOM05D001638 ORTHO05D005197 8.7e-99 364.8 520 50.6
ECA234G3220 Erigeron canadensis HOM05D001638 ORTHO05D005197 3.3e-98 362.8 288 67.7
HPP92_024242 Vanilla planifolia HOM05D001638 ORTHO05D005197 2.4e-96 356.7 409 55.7
QL01p011221 Quercus lobata HOM05D001638 ORTHO05D005197 6.9e-96 355.1 418 53.1
Zm00001eb333990 Zea mays HOM05D001638 ORTHO05D005197 9.0e-96 354.8 298 61.4
Zm00001eb127190 Zea mays HOM05D001638 ORTHO05D005197 3.2e-93 346.3 298 59.7
SEGI_12976 Sequoiadendron giganteum HOM05D001638 ORTHO05D005197 2.8e-89 333.2 340 54.7
Nitab4.5_0000914g0150 Nicotiana tabacum HOM05D001638 ORTHO05D005197 4.8e-89 332.4 288 65.3
Thhalv10020921m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 1.1e-88 331.3 305 58.7
AL1G10102 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 3.4e-87 326.2 308 59.1
Nitab4.5_0010229g0010 Nicotiana tabacum HOM05D001638 ORTHO05D005197 3.7e-81 306.2 227 71.8
SGA_v2.0_scaffold131G34466 Striga asiatica HOM05D001638 ORTHO05D005197 2.8e-73 280.0 226 65.5
MD07G1102000 Malus domestica HOM05D001638 ORTHO05D005197 2.3e-67 260.4 216 66.2
Mapoly0029s0122 Marchantia polymorpha HOM05D001638 ORTHO05D005197 6.3e-65 252.3 333 43.2
Pp3c5_7370 Physcomitrium patens HOM05D001638 ORTHO05D005197 7.7e-63 245.4 330 43.6
SHI03505 Sapria himalayana HOM05D001638 ORTHO05D005197 6.1e-52 209.1 311 44.4
Atru.chr5.164 Acer truncatum HOM05D001638 ORTHO05D005197 5.7e-50 202.6 233 59.2
AUR62013726 Chenopodium quinoa HOM05D001638 ORTHO05D005197 4.8e-49 199.5 136 73.5
Actinidia12156 Actinidia chinensis HOM05D001638 ORTHO05D005197 6.5e-46 189.1 116 80.2
FAN06G4892 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.6e-44 184.5 231 61.5
FAN03G2111 Fragaria x ananassa HOM05D001638 ORTHO05D001690 1.0e-43 181.8 156 64.7
Atru.chr5.165 Acer truncatum HOM05D001638 ORTHO05D005197 5.4e-40 169.5 112 76.8
AL4G38750 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 2.0e-39 167.5 156 57.7
SMO141G0070 Selaginella moellendorffii HOM05D001638 ORTHO05D005197 5.9e-39 166.0 259 40.5
Cre13.g587000 Chlamydomonas reinhardtii HOM05D001638 ORTHO05D005197 3.8e-38 163.3 382 30.6
MCO04G285 Micromonas commoda HOM05D001638 ORTHO05D005197 9.5e-37 158.7 361 33.0
arahy.Tifrunner.gnm1.ann1.XG8PKW Arachis hypogaea HOM05D001638 ORTHO05D005197 2.1e-36 157.5 174 54.0
Haze_17173 Corylus avellana HOM05D001638 ORTHO05D005197 4.7e-36 156.4 215 46.5
Actinidia12157 Actinidia chinensis HOM05D001638 ORTHO05D005197 1.8e-27 127.9 75 85.3
MD02G1263900 Malus domestica HOM05D001638 ORTHO05D005197 4.0e-27 126.7 98 64.3
MD07G1101900 Malus domestica HOM05D001638 ORTHO05D005197 2.0e-26 124.4 170 45.3
Actinidia12155 Actinidia chinensis HOM05D001638 ORTHO05D005197 1.7e-25 121.3 81 80.2
Cpa.g.sc116.74 Carica papaya HOM05D001638 ORTHO05D005197 1.2e-23 115.2 85 67.1
AagrBONN_evm.TU.Sc2ySwM_368.1521 Anthoceros agrestis HOM05D001638 ORTHO05D005197 4.7e-20 103.2 96 54.2
Cpa.g.c42599 Carica papaya HOM05D001638 ORTHO05D005197 2.3e-19 100.9 77 66.2
MD02G1264000 Malus domestica HOM05D001638 ORTHO05D005197 3.1e-19 100.5 69 72.5
arahy.Tifrunner.gnm1.ann1.XV6DNZ Arachis hypogaea HOM05D001638 ORTHO05D005197 4.0e-19 100.1 56 87.5
CBR_g1066 Chara braunii HOM05D001638 ORTHO05D005197 6.8e-19 99.4 191 39.8
PRCOL_00005874 Prasinoderma coloniale HOM05D001638 ORTHO05D005197 1.5e-18 98.2 336 27.4
arahy.Tifrunner.gnm1.ann1.HIFV4E Arachis hypogaea HOM05D001638 ORTHO05D005197 3.4e-18 97.1 174 38.5
MD02G1264200 Malus domestica HOM05D001638 ORTHO05D005197 7.5e-18 95.9 68 73.5
FAN06G4261 Fragaria x ananassa HOM05D001638 ORTHO05D005197 9.8e-18 95.5 178 42.1
Oeu051899.1 Olea europaea HOM05D001638 ORTHO05D005197 1.3e-17 95.1 62 74.2
MD07G1102300 Malus domestica HOM05D001638 ORTHO05D005197 4.9e-17 93.2 118 48.3
Oeu021607.1 Olea europaea HOM05D001638 ORTHO05D005197 1.2e-15 88.6 62 67.7
arahy.Tifrunner.gnm1.ann1.11FR17 Arachis hypogaea HOM05D001638 ORTHO05D005197 4.6e-15 86.7 61 70.5
FvH4_7g09370 Fragaria vesca HOM05D001638 ORTHO05D005197 6.0e-15 86.3 135 44.4
Cfa024988 Carpinus fangiana HOM05D001638 ORTHO05D124161 1.5e-10 71.6 363 27.3
FAN06G2650 Fragaria x ananassa HOM05D001638 ORTHO05D005197 2.2e-09 67.8 89 49.4
Sed0021805 Sechium edule HOM05D001638 ORTHO05D005197 2.9e-09 67.4 110 42.7
CBR_g1068 Chara braunii HOM05D001638 ORTHO05D005197 8.3e-09 65.9 169 27.2
CSS0003841 Camellia sinensis var. sinensis HOM05D015837 ORTHO05D005197 1.6e-07 61.6 34 88.2
CSS0010693 Camellia sinensis var. sinensis HOM05D015837 ORTHO05D005197 1.6e-07 61.6 34 88.2
CSS0047271 Camellia sinensis var. sinensis HOM05D015837 ORTHO05D005197 1.6e-07 61.6 34 88.2
CSS0015296 Camellia sinensis var. sinensis HOM05D015837 ORTHO05D005197 4.6e-07 60.1 34 85.3
CSS0024167 Camellia sinensis var. sinensis HOM05D015837 ORTHO05D005197 7.8e-07 59.3 34 85.3
CSS0018530 Camellia sinensis var. sinensis HOM05D015837 ORTHO05D005197 1.0e-06 58.9 34 85.3
CSS0008973 Camellia sinensis var. sinensis HOM05D015837 ORTHO05D005197 1.3e-06 58.5 34 85.3
CSS0002985 Camellia sinensis var. sinensis HOM05D015837 ORTHO05D005197 2.3e-06 57.8 34 82.4
arahy.Tifrunner.gnm1.ann1.R2G04T Arachis hypogaea HOM05D001638 ORTHO05D005197 3.9e-06 57.0 33 78.8
SEGI_13080 Sequoiadendron giganteum HOM05D026866 ORTHO05D005197 6.6e-06 56.2 46 63.0


User provided reference genes

Program Settings