Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022009 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 3.7e-93 345.1 207 100.0
Actinidia06039 Actinidia chinensis HOM05D005889 ORTHO05D007495 7.2e-49 198.0 208 62.5
Rhsim10G0026400 Rhododendron simsii HOM05D005889 ORTHO05D007495 3.4e-46 189.1 202 59.4
Rhsim10G0026900 Rhododendron simsii HOM05D005889 ORTHO05D007495 6.3e-45 184.9 202 58.9
vmacro05795 Vaccinium macrocarpon HOM05D005889 ORTHO05D007495 1.5e-41 173.7 230 55.2
Hma1.2p1_0697F.1_g204970 Hydrangea macrophylla HOM05D005889 ORTHO05D007495 1.6e-40 170.2 211 55.5
CSS0046645 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 4.0e-39 165.6 204 54.9
CSS0028338 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 5.2e-39 165.2 204 55.4
Manes.17G118700 Manihot esculenta HOM05D005889 ORTHO05D007495 1.5e-38 163.7 97 88.7
TAR371G1159 Trochodendron aralioides HOM05D005889 ORTHO05D007495 7.5e-38 161.4 109 80.7
QL02p077702 Quercus lobata HOM05D005889 ORTHO05D007495 2.2e-37 159.8 110 80.0
Nn4g22882 Nelumbo nucifera HOM05D005889 ORTHO05D007495 2.9e-37 159.5 112 76.8
Cc07_g02540 Coffea canephora HOM05D005889 ORTHO05D007495 4.9e-37 158.7 97 86.6
PGSC0003DMG400000508 Solanum tuberosum HOM05D005889 ORTHO05D007495 4.9e-37 158.7 116 73.3
Sopen02g031900 Solanum pennellii HOM05D005889 ORTHO05D007495 6.4e-37 158.3 116 73.3
Nitab4.5_0001952g0130 Nicotiana tabacum HOM05D005889 ORTHO05D007495 8.3e-37 157.9 103 81.6
Solyc02g087150.3 Solanum lycopersicum HOM05D005889 ORTHO05D007495 1.1e-36 157.5 116 72.4
Ciclev10012884m.g Citrus clementina HOM05D005889 ORTHO05D007495 3.2e-36 156.0 112 74.1
DCAR_011198 Daucus carota HOM05D005889 ORTHO05D007495 7.0e-36 154.8 111 76.6
CAN.G206.53 Capsicum annuum HOM05D005889 ORTHO05D007495 9.2e-36 154.5 103 80.6
Cfa007463 Carpinus fangiana HOM05D001690 ORTHO05D002627 9.2e-36 154.5 93 89.2
MBI14_g19739_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 9.2e-36 154.5 206 50.0
Prupe.3G279900 Prunus persica HOM05D005889 ORTHO05D007495 1.6e-35 153.7 122 68.0
Sed0023571 Sechium edule HOM05D005889 ORTHO05D007495 2.0e-35 153.3 118 67.8
CiPaw.03G035200 Carya illinoinensis HOM05D005889 ORTHO05D007495 3.5e-35 152.5 93 88.2
Migut.K01361 Erythranthe guttata HOM05D005889 ORTHO05D007495 3.5e-35 152.5 96 84.4
Potri.001G350500 Populus trichocarpa HOM05D005889 ORTHO05D007495 6.0e-35 151.8 112 73.2
SalBow1G5017 Salvia bowleyana HOM05D005889 ORTHO05D007495 6.0e-35 151.8 110 73.6
CDE01G0491 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 1.3e-34 150.6 111 73.9
SGA_v2.0_scaffold205G41723 Striga asiatica HOM05D005889 ORTHO05D007495 1.7e-34 150.2 114 72.8
MD17G1039100 Malus domestica HOM05D005889 ORTHO05D007495 3.0e-34 149.4 111 73.0
Aqoxy3G03079 Aquilegia oxysepala HOM05D005889 ORTHO05D007495 3.9e-34 149.1 110 71.8
CDE02G1560 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 3.9e-34 149.1 109 75.2
PSO832G3377 Papaver somniferum HOM05D005889 ORTHO05D007495 5.0e-34 148.7 106 74.5
MSTRG.15501 Avicennia marina HOM05D005889 ORTHO05D007495 6.6e-34 148.3 96 82.3
PSO063G7534 Papaver somniferum HOM05D005889 ORTHO05D007495 6.6e-34 148.3 106 75.5
CsaV3_3G042070 Cucumis sativus L. HOM05D005889 ORTHO05D007495 8.6e-34 147.9 106 73.6
Manes.15G180360 Manihot esculenta HOM05D005889 ORTHO05D007495 8.6e-34 147.9 97 80.4
Sabra16G0230000 Salix brachista HOM05D005889 ORTHO05D007495 8.6e-34 147.9 116 70.7
MELO3C009927.2 Cucumis melo HOM05D005889 ORTHO05D007495 2.5e-33 146.4 106 73.6
Glyma.13G070100 Glycine max HOM05D005889 ORTHO05D007495 3.3e-33 146.0 117 67.5
Lsat_1_v5_gn_2_92760 Lactuca sativa HOM05D005889 ORTHO05D007495 3.3e-33 146.0 113 72.6
PGR083G2278 Punica granatum HOM05D005889 ORTHO05D007495 3.3e-33 146.0 109 72.5
THA.LOC104821069 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 3.3e-33 146.0 108 71.3
Phvul.004G019800 Phaseolus vulgaris HOM05D005889 ORTHO05D007495 9.5e-33 144.4 115 69.6
Atru.chr8.2424 Acer truncatum HOM05D005889 ORTHO05D007495 1.2e-32 144.1 106 72.6
Eucgr.J02175 Eucalyptus grandis HOM05D005889 ORTHO05D007495 1.2e-32 144.1 94 79.8
Lj7C409T13 Lonicera japonica HOM05D005889 ORTHO05D007495 1.2e-32 144.1 102 77.5
Thecc.04G004200 Theobroma cacao HOM05D005889 ORTHO05D007495 1.2e-32 144.1 96 79.2
VMungo0464G2061 Vigna mungo HOM05D001690 ORTHO05D002627 1.6e-32 143.7 110 72.7
FvH4_6g50270 Fragaria vesca HOM05D005889 ORTHO05D007495 2.1e-32 143.3 97 77.3
FAN14G2248 Fragaria x ananassa HOM05D005889 ORTHO05D007495 2.1e-32 143.3 97 77.3
A02p02770 Brassica napus HOM05D005889 ORTHO05D007495 2.8e-32 142.9 97 72.2
BraA02t05248Z Brassica rapa HOM05D005889 ORTHO05D007495 2.8e-32 142.9 97 72.2
Duzib147G1282 Durio zibethinus HOM05D005889 ORTHO05D007495 2.8e-32 142.9 97 76.3
Peaxi162Scf00129g00825 Petunia axillaris HOM05D005889 ORTHO05D007495 2.8e-32 142.9 92 81.5
AT5G14910 Arabidopsis thaliana HOM05D005889 ORTHO05D007495 3.6e-32 142.5 97 73.2
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 3.6e-32 142.5 102 72.5
Gohir.D07G225400 Gossypium hirsutum HOM05D005889 ORTHO05D007495 3.6e-32 142.5 124 63.7
RcHm_v2.0_Chr2g0170581 Rosa chinensis HOM05D005889 ORTHO05D007495 3.6e-32 142.5 97 77.3
BcaB01g05094 Brassica carinata HOM05D005889 ORTHO05D007495 4.7e-32 142.1 97 72.2
ECA238G1302 Erigeron canadensis HOM05D005889 ORTHO05D007495 6.2e-32 141.7 114 71.1
THA.LOC104822380 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 6.2e-32 141.7 94 76.6
CARHR198430 Cardamine hirsuta HOM05D005889 ORTHO05D007495 8.0e-32 141.4 97 73.2
Gorai.001G259800 Gossypium raimondii HOM05D005889 ORTHO05D007495 8.0e-32 141.4 124 62.9
GSVIVG01032527001 Vitis vinifera HOM05D005889 ORTHO05D007495 8.0e-32 141.4 83 91.6
BcaNung03088 Brassica carinata HOM05D005889 ORTHO05D007495 1.1e-31 141.0 95 73.7
Carub.0006s1306 Capsella rubella HOM05D005889 ORTHO05D007495 1.1e-31 141.0 97 73.2
Sed0001958 Sechium edule HOM05D005889 ORTHO05D007495 1.4e-31 140.6 107 71.0
Sc20g0002790 Simmondsia chinensis HOM05D005889 ORTHO05D007495 1.4e-31 140.6 123 68.3
BcaNung05888 Brassica carinata HOM05D005889 ORTHO05D007495 1.8e-31 140.2 94 73.4
C02p07380 Brassica napus HOM05D005889 ORTHO05D007495 1.8e-31 140.2 94 73.4
C03p07840 Brassica napus HOM05D005889 ORTHO05D007495 1.8e-31 140.2 95 74.7
BolC2t06669H Brassica oleracea HOM05D005889 ORTHO05D007495 1.8e-31 140.2 94 73.4
Thhalv10014795m.g Eutrema salsugineum HOM05D005889 ORTHO05D007495 1.8e-31 140.2 97 72.2
A03p06840 Brassica napus HOM05D005889 ORTHO05D007495 2.3e-31 139.8 93 76.3
BolC3t13283H Brassica oleracea HOM05D005889 ORTHO05D007495 2.3e-31 139.8 95 73.7
BraA03t10009Z Brassica rapa HOM05D005889 ORTHO05D007495 2.3e-31 139.8 93 76.3
Glyma.19G012900 Glycine max HOM05D005889 ORTHO05D007495 2.3e-31 139.8 130 58.5
arahy.Tifrunner.gnm1.ann1.LQS8H1 Arachis hypogaea HOM05D005889 ORTHO05D007495 3.1e-31 139.4 92 79.3
arahy.Tifrunner.gnm1.ann1.XH0R3V Arachis hypogaea HOM05D005889 ORTHO05D007495 3.1e-31 139.4 92 79.3
Lj2g0018244 Lotus japonicus HOM05D005889 ORTHO05D007495 5.2e-31 138.7 121 62.0
AUR62032095 Chenopodium quinoa HOM05D005889 ORTHO05D007495 6.8e-31 138.3 167 51.5
FAN09G4317 Fragaria x ananassa HOM05D005889 ORTHO05D007495 6.8e-31 138.3 99 75.8
Ah.16g106950 Amaranthus hybridus HOM05D005889 ORTHO05D007495 8.9e-31 137.9 122 63.9
unitig_21.g20501 Utricularia gibba HOM05D005889 ORTHO05D007495 1.2e-30 137.5 98 72.4
MBI14_g42400_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 1.5e-30 137.1 237 43.9
FAN05G0142 Fragaria x ananassa HOM05D005889 ORTHO05D007495 2.0e-30 136.7 108 70.4
HanXRQChr12g0385561 Helianthus annuus HOM05D005889 ORTHO05D007495 2.0e-30 136.7 91 79.1
FAN02G1209 Fragaria x ananassa HOM05D005889 ORTHO05D007495 2.6e-30 136.3 126 65.1
Medtr6g007887 Medicago truncatula HOM05D005889 ORTHO05D007495 4.4e-30 135.6 100 71.0
CANSAT64G2621 Cannabis sativa HOM05D005889 ORTHO05D007495 5.8e-30 135.2 96 74.0
Ca_04220_v3 Cicer arietinum L. HOM05D005889 ORTHO05D007495 5.8e-30 135.2 93 74.2
TWI56G0856 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 7.5e-30 134.8 125 60.8
HanXRQChr14g0448791 Helianthus annuus HOM05D005889 ORTHO05D007495 9.8e-30 134.4 113 68.1
CANSAT64G0610 Cannabis sativa HOM05D005889 ORTHO05D007495 2.2e-29 133.3 125 61.6
Oeu047335.1 Olea europaea HOM05D005889 ORTHO05D007495 2.2e-29 133.3 130 63.8
ClCG10G014500 Citrullus lanatus HOM05D005889 ORTHO05D007495 4.9e-29 132.1 94 73.4
Sp6g29140 Schrenkiella parvula HOM05D005889 ORTHO05D007495 4.9e-29 132.1 89 73.0
Hund20036 Selenicereus undatus HOM05D005889 ORTHO05D007495 1.4e-28 130.6 109 67.0
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 3.2e-28 129.4 99 71.7
Psat1g080040 Pisum sativum HOM05D005889 ORTHO05D007495 6.0e-27 125.2 135 52.6
TWI12G0403 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 7.8e-27 124.8 120 60.8
Nitab4.5_0005206g0020 Nicotiana tabacum HOM05D005889 ORTHO05D007495 1.0e-26 124.4 105 65.7
Aa31LG11G14590 Aethionema arabicum HOM05D005889 ORTHO05D007495 3.3e-25 119.4 143 49.7
EL10Ac2g03378 Beta vulgaris HOM05D005889 ORTHO05D007495 1.1e-23 114.4 80 71.2
BcaB01g05020 Brassica carinata HOM05D005889 ORTHO05D007495 8.9e-23 111.3 80 68.8
ATR0787G083 Amborella trichopoda HOM05D005889 ORTHO05D007495 1.5e-22 110.5 75 76.0
Os05g0337400 Oryza sativa ssp. japonica HOM05D005889 ORTHO05D007495 1.3e-21 107.5 99 58.6
Peaxi162Scf00700g00623 Petunia axillaris HOM05D005889 ORTHO05D007495 2.9e-21 106.3 72 75.0
Zm00001eb286710 Zea mays HOM05D005889 ORTHO05D007495 4.9e-21 105.5 92 59.8
Pp3c10_16560 Physcomitrium patens HOM05D005889 ORTHO05D007495 5.4e-20 102.1 86 58.1
Pp3c2_14600 Physcomitrium patens HOM05D005889 ORTHO05D007495 7.1e-20 101.7 84 59.5
Lalb_Chr21g0319321 Lupinus albus HOM05D000340 ORTHO05D000821 1.2e-19 100.9 78 64.1
Rhsim10G0027100 Rhododendron simsii HOM05D005889 ORTHO05D007495 3.5e-19 99.4 61 86.9
Pp3c1_25290 Physcomitrium patens HOM05D005889 ORTHO05D007495 6.6e-18 95.1 86 58.1
Mapoly0034s0091 Marchantia polymorpha HOM05D005889 ORTHO05D007495 7.3e-17 91.7 97 52.6
CSS0042844 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 3.1e-15 86.3 78 69.2
RcHm_v2.0_Chr2g0170541 Rosa chinensis HOM05D005889 ORTHO05D007495 1.7e-13 80.5 60 75.0
AL6G25690 Arabidopsis lyrata HOM05D005889 ORTHO05D007495 1.1e-12 77.8 76 55.3
SEGI_28638 Sequoiadendron giganteum HOM05D005889 ORTHO05D007495 1.9e-12 77.0 106 47.2
SMO119G0369 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 2.7e-11 73.2 109 33.9
Dinv35030 Davidia involucrata HOM05D005889 ORTHO05D007495 4.6e-11 72.4 138 46.4
Gohir.A07G218300 Gossypium hirsutum HOM05D005889 ORTHO05D007495 6.0e-11 72.0 84 50.0
TPR.G132 Trifolium pratense HOM05D005889 ORTHO05D007495 4.3e-09 65.9 42 76.2
HPP92_014818 Vanilla planifolia HOM05D005889 ORTHO05D007495 5.6e-09 65.5 71 50.7
Nn3g16976 Nelumbo nucifera HOM05D005889 ORTHO05D007495 2.4e-07 60.1 145 35.9
SMO163G0046 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 2.0e-06 57.0 104 30.8
Cpa.g.sc286.7 Carica papaya HOM05D005889 ORTHO05D007495 7.6e-06 55.1 147 32.7


User provided reference genes

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