Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021998 Camellia sinensis var. sinensis HOM05D006762 ORTHO05D003505 2.0e-37 158.7 87 100.0
CARHR173910 Cardamine hirsuta HOM05D006762 ORTHO05D003505 2.6e-16 88.6 109 54.1
Glyma.17G142500 Glycine max HOM05D006762 ORTHO05D003505 3.4e-16 88.2 96 59.4
Carub.0007s2409 Capsella rubella HOM05D006762 ORTHO05D003505 9.9e-16 86.7 98 57.1
Rhsim07G0109700 Rhododendron simsii HOM05D006762 ORTHO05D003505 1.3e-15 86.3 100 59.0
vmacro21548 Vaccinium macrocarpon HOM05D006762 ORTHO05D003505 1.7e-15 85.9 101 58.4
Glyma.05G060100 Glycine max HOM05D006762 ORTHO05D003505 2.2e-15 85.5 95 61.1
CiPaw.12G051800 Carya illinoinensis HOM05D006762 ORTHO05D003505 3.8e-15 84.7 107 53.3
Hund14549 Selenicereus undatus HOM05D006762 ORTHO05D003505 1.1e-14 83.2 102 57.8
Prupe.5G068300 Prunus persica HOM05D006762 ORTHO05D003505 1.4e-14 82.8 103 55.3
Actinidia27471 Actinidia chinensis HOM05D006762 ORTHO05D003505 2.4e-14 82.0 101 56.4
AT4G17310 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 4.2e-14 81.3 98 55.1
Lj8A263T41 Lonicera japonica HOM05D006762 ORTHO05D003505 4.2e-14 81.3 106 57.5
PGR031G2035 Punica granatum HOM05D006762 ORTHO05D003505 9.2e-14 80.1 102 57.8
Carub.0008s0032 Capsella rubella HOM05D006762 ORTHO05D003505 1.2e-13 79.7 104 51.9
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 2.1e-13 79.0 100 51.0
TAR629G0824 Trochodendron aralioides HOM05D006762 ORTHO05D003505 2.1e-13 79.0 98 55.1
Sopen08g027040 Solanum pennellii HOM05D006762 ORTHO05D003505 4.6e-13 77.8 103 52.4
TPR.G37627 Trifolium pratense HOM05D006762 ORTHO05D003505 4.6e-13 77.8 88 59.1
Lalb_Chr16g0386731 Lupinus albus HOM05D006762 ORTHO05D003505 6.0e-13 77.4 86 57.0
Sp2g12170 Schrenkiella parvula HOM05D006762 ORTHO05D003505 7.8e-13 77.0 98 54.1
A02p31340 Brassica napus HOM05D006762 ORTHO05D003505 1.0e-12 76.6 94 57.4
A06p45070 Brassica napus HOM05D006762 ORTHO05D003505 1.0e-12 76.6 98 55.1
BraA02t08136Z Brassica rapa HOM05D006762 ORTHO05D003505 1.0e-12 76.6 94 57.4
BraA06t27376Z Brassica rapa HOM05D006762 ORTHO05D003505 1.3e-12 76.3 99 53.5
Medtr4g100820 Medicago truncatula HOM05D006762 ORTHO05D003505 1.3e-12 76.3 88 56.8
Thhalv10001082m.g Eutrema salsugineum HOM05D006762 ORTHO05D003505 1.7e-12 75.9 98 55.1
FvH4_5g19060 Fragaria vesca HOM05D006762 ORTHO05D003505 1.7e-12 75.9 100 52.0
QL12p012005 Quercus lobata HOM05D006762 ORTHO05D003505 2.3e-12 75.5 90 55.6
BcaC03g16962 Brassica carinata HOM05D006762 ORTHO05D003505 3.0e-12 75.1 98 54.1
C02p48680 Brassica napus HOM05D006762 ORTHO05D003505 3.0e-12 75.1 98 54.1
BolC2t10960H Brassica oleracea HOM05D006762 ORTHO05D003505 3.0e-12 75.1 98 54.1
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 3.9e-12 74.7 98 54.1
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 3.9e-12 74.7 98 50.0
Thecc.03G250100 Theobroma cacao HOM05D006762 ORTHO05D003505 6.6e-12 73.9 107 51.4
Oeu020431.1 Olea europaea HOM05D006762 ORTHO05D003505 8.7e-12 73.6 87 54.0
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 1.1e-11 73.2 89 53.9
BolC7t43652H Brassica oleracea HOM05D006762 ORTHO05D003505 1.5e-11 72.8 95 53.7
Psat4g072480 Pisum sativum HOM05D006762 ORTHO05D003505 1.9e-11 72.4 90 51.1
GSVIVG01004713001 Vitis vinifera HOM05D006762 ORTHO05D003505 1.9e-11 72.4 98 49.0
BcaC06g31382 Brassica carinata HOM05D006762 ORTHO05D003505 2.5e-11 72.0 98 53.1
BcaC06g34251 Brassica carinata HOM05D006762 ORTHO05D003505 2.5e-11 72.0 94 54.3
C07p31100 Brassica napus HOM05D006762 ORTHO05D003505 2.5e-11 72.0 94 54.3
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 2.5e-11 72.0 96 54.2
Ca_21971_v3 Cicer arietinum L. HOM05D006762 ORTHO05D003505 2.5e-11 72.0 87 58.6
Lalb_Chr09g0330061 Lupinus albus HOM05D006762 ORTHO05D003505 2.5e-11 72.0 88 53.4
HanXRQChr03g0087771 Helianthus annuus HOM05D006762 ORTHO05D003505 3.3e-11 71.6 90 52.2
CANSAT21G1567 Cannabis sativa HOM05D006762 ORTHO05D003505 4.3e-11 71.2 92 52.2
MD04G1063100 Malus domestica HOM05D006762 ORTHO05D003505 7.3e-11 70.5 96 50.0
Sabra16G0215100 Salix brachista HOM05D006762 ORTHO05D003505 7.3e-11 70.5 94 48.9
Nn6g35292 Nelumbo nucifera HOM05D007429 ORTHO05D003505 1.3e-10 69.7 94 48.9
Potri.001G333800 Populus trichocarpa HOM05D006762 ORTHO05D003505 1.3e-10 69.7 93 49.5
Nn6g33933 Nelumbo nucifera HOM05D006762 ORTHO05D003505 2.1e-10 68.9 100 49.0
TWI81G0572 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 2.1e-10 68.9 112 48.2
Dinv39153 Davidia involucrata HOM05D000502 ORTHO05D000356 2.8e-10 68.6 89 56.2
AL8G10530 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 3.6e-10 68.2 96 51.0
Gohir.A05G046400 Gossypium hirsutum HOM05D007429 ORTHO05D003505 4.8e-10 67.8 93 49.5
CAN.G1058.38 Capsicum annuum HOM05D006762 ORTHO05D003505 8.1e-10 67.0 94 50.0
Ciclev10023003m.g Citrus clementina HOM05D006762 ORTHO05D003505 8.1e-10 67.0 93 50.5
CiPaw.11G079800 Carya illinoinensis HOM05D006762 ORTHO05D003505 1.1e-09 66.6 98 49.0
Manes.01G081200 Manihot esculenta HOM05D006762 ORTHO05D003505 1.1e-09 66.6 98 49.0
RcHm_v2.0_Chr7g0203511 Rosa chinensis HOM05D006762 ORTHO05D003505 1.1e-09 66.6 93 51.6
Phvul.003G221200 Phaseolus vulgaris HOM05D006762 ORTHO05D003505 1.4e-09 66.2 86 57.0
Potri.017G068600 Populus trichocarpa HOM05D006762 ORTHO05D003505 1.4e-09 66.2 96 46.9
PGSC0003DMG400004817 Solanum tuberosum HOM05D006762 ORTHO05D003505 1.8e-09 65.9 94 50.0
Lsat_1_v5_gn_6_90840 Lactuca sativa HOM05D006762 ORTHO05D003505 2.4e-09 65.5 94 47.9
AT5G47455 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 4.0e-09 64.7 97 47.4
MSTRG.12104 Avicennia marina HOM05D006762 ORTHO05D003505 4.0e-09 64.7 97 49.5
SalBow6G1716 Salvia bowleyana HOM05D006762 ORTHO05D003505 4.0e-09 64.7 101 47.5
Aqoxy7G00783 Aquilegia oxysepala HOM05D006762 ORTHO05D003505 5.3e-09 64.3 100 45.0
ECA240G1429 Erigeron canadensis HOM05D006762 ORTHO05D003505 5.3e-09 64.3 95 49.5
Thhalv10015136m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 5.3e-09 64.3 93 49.5
FAN13G0097 Fragaria x ananassa HOM05D000502 ORTHO05D000356 5.3e-09 64.3 91 49.5
Glyma.18G109000 Glycine max HOM05D006762 ORTHO05D003505 5.3e-09 64.3 97 48.5
Manes.02G040300 Manihot esculenta HOM05D006762 ORTHO05D003505 5.3e-09 64.3 98 48.0
Duzib168G1390 Durio zibethinus HOM05D007429 ORTHO05D003505 6.9e-09 63.9 93 49.5
Migut.A01106 Erythranthe guttata HOM05D006762 ORTHO05D003505 6.9e-09 63.9 96 47.9
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 6.9e-09 63.9 87 47.1
FAN08G1018 Fragaria x ananassa HOM05D006762 ORTHO05D003505 6.9e-09 63.9 87 47.1
FAN18G2762 Fragaria x ananassa HOM05D006762 ORTHO05D003505 6.9e-09 63.9 87 47.1
SalBow6G0204 Salvia bowleyana HOM05D006762 ORTHO05D003505 6.9e-09 63.9 101 46.5
FvH4_2g35460 Fragaria vesca HOM05D007429 ORTHO05D003505 9.0e-09 63.5 91 48.4
Lj4g0004620 Lotus japonicus HOM05D006762 ORTHO05D003505 9.0e-09 63.5 90 50.0
Duzib084G1100 Durio zibethinus HOM05D006762 ORTHO05D003505 1.5e-08 62.8 98 48.0
Cc08_g09700 Coffea canephora HOM05D007429 ORTHO05D003505 2.0e-08 62.4 94 47.9
COL.COLO4_37166 Corchorus olitorius HOM05D006762 ORTHO05D003505 2.0e-08 62.4 98 49.0
Duzib205G1027 Durio zibethinus HOM05D006762 ORTHO05D003505 3.4e-08 61.6 99 47.5
CARHR201590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 4.4e-08 61.2 93 49.5
QL04p035820 Quercus lobata HOM05D006762 ORTHO05D003505 5.8e-08 60.8 91 48.4
Gorai.004G198000 Gossypium raimondii HOM05D006762 ORTHO05D003505 7.6e-08 60.5 96 47.9
Cc08_g12340 Coffea canephora HOM05D006762 ORTHO05D003505 1.3e-07 59.7 102 46.1
Gohir.A08G169800 Gossypium hirsutum HOM05D006762 ORTHO05D003505 1.3e-07 59.7 96 47.9
Gohir.D08G188100 Gossypium hirsutum HOM05D006762 ORTHO05D003505 1.3e-07 59.7 96 47.9
Sed0003359 Sechium edule HOM05D007429 ORTHO05D003505 1.3e-07 59.7 92 51.1
AUR62019952 Chenopodium quinoa HOM05D006762 ORTHO05D003505 1.7e-07 59.3 90 47.8
Solyc08g078560.3 Solanum lycopersicum HOM05D006762 ORTHO05D003505 1.7e-07 59.3 94 44.7
CANSAT25G2095 Cannabis sativa HOM05D007429 ORTHO05D003505 2.2e-07 58.9 92 44.6
Prupe.1G447500 Prunus persica HOM05D007429 ORTHO05D003505 2.2e-07 58.9 93 47.3
PSO173G0075 Papaver somniferum HOM05D007429 ORTHO05D003505 3.8e-07 58.2 93 49.5
PSO824G0083 Papaver somniferum HOM05D007429 ORTHO05D003505 4.9e-07 57.8 93 49.5
TWI60G1284 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 4.9e-07 57.8 100 45.0
AUR62007089 Chenopodium quinoa HOM05D006762 ORTHO05D003505 8.4e-07 57.0 90 46.7
ClCG10G002600 Citrullus lanatus HOM05D006762 ORTHO05D003505 8.4e-07 57.0 95 43.2
CDE12G0636 Ceratophyllum demersum HOM05D006762 ORTHO05D003505 1.1e-06 56.6 94 39.4
CDE04G0461 Ceratophyllum demersum HOM05D005822 ORTHO05D007267 1.4e-06 56.2 45 64.4
Ciclev10010039m.g Citrus clementina HOM05D007429 ORTHO05D003505 2.4e-06 55.5 92 45.7
MELO3C013933.2 Cucumis melo HOM05D006762 ORTHO05D003505 3.2e-06 55.1 91 42.9
CsaV3_3G002630 Cucumis sativus L. HOM05D006762 ORTHO05D003505 3.2e-06 55.1 91 42.9
Glyma.17G210100 Glycine max HOM05D006762 ORTHO05D003505 3.2e-06 55.1 94 47.9
Gohir.D05G048100 Gossypium hirsutum HOM05D007429 ORTHO05D003505 3.2e-06 55.1 78 44.9
TWI63G1379 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 3.2e-06 55.1 93 48.4
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 4.2e-06 54.7 84 45.2
Lalb_Chr23g0269661 Lupinus albus HOM05D007429 ORTHO05D003505 4.2e-06 54.7 88 44.3
Nn8g39115 Nelumbo nucifera HOM05D007429 ORTHO05D003505 4.2e-06 54.7 89 46.1
Nitab4.5_0000882g0040 Nicotiana tabacum HOM05D006762 ORTHO05D003505 4.2e-06 54.7 96 46.9
THA.LOC104812806 Tarenaya hassleriana HOM05D006762 ORTHO05D003505 4.2e-06 54.7 92 44.6
PGR031G3761 Punica granatum HOM05D007429 ORTHO05D003505 5.4e-06 54.3 92 43.5
Sed0021009 Sechium edule HOM05D006762 ORTHO05D003505 5.4e-06 54.3 95 43.2
GSVIVG01035615001 Vitis vinifera HOM05D007429 ORTHO05D003505 7.1e-06 53.9 92 44.6
Sp6g31990 Schrenkiella parvula HOM05D007429 ORTHO05D003505 9.3e-06 53.5 84 46.4


User provided reference genes

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