Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021997 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 4.3e-127 458.0 229 100.0
CSS0045485 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 3.6e-126 454.9 229 99.6
Rhsim12G0077600 Rhododendron simsii HOM05D004550 ORTHO05D005340 7.4e-103 377.5 225 84.0
Dinv34106 Davidia involucrata HOM05D004550 ORTHO05D005340 1.6e-102 376.3 227 81.9
Actinidia31956 Actinidia chinensis HOM05D004550 ORTHO05D005340 1.9e-95 352.8 228 79.4
Hma1.2p1_0354F.1_g133690 Hydrangea macrophylla HOM05D004550 ORTHO05D005340 6.3e-94 347.8 228 77.2
Cc11_g12470 Coffea canephora HOM05D004550 ORTHO05D005340 9.0e-93 344.0 228 74.6
Cfa008917 Carpinus fangiana HOM05D004550 ORTHO05D005340 1.5e-92 343.2 227 76.2
QL03p070023 Quercus lobata HOM05D004550 ORTHO05D005340 2.0e-92 342.8 227 75.8
Nitab4.5_0000334g0090 Nicotiana tabacum HOM05D004550 ORTHO05D005340 2.6e-92 342.4 228 74.6
Nitab4.5_0011843g0010 Nicotiana tabacum HOM05D004550 ORTHO05D005340 1.0e-91 340.5 228 74.1
CAN.G1200.3 Capsicum annuum HOM05D004550 ORTHO05D005340 1.3e-91 340.1 228 73.7
vmacro01339 Vaccinium macrocarpon HOM05D004550 ORTHO05D005340 5.0e-91 338.2 309 59.9
CiPaw.06G089400 Carya illinoinensis HOM05D004550 ORTHO05D005340 1.1e-90 337.0 226 73.9
TAR629G0577 Trochodendron aralioides HOM05D004550 ORTHO05D005340 3.2e-90 335.5 227 72.7
PGSC0003DMG400028333 Solanum tuberosum HOM05D004550 ORTHO05D005340 7.2e-90 334.3 228 72.4
Solyc05g012710.4 Solanum lycopersicum HOM05D004550 ORTHO05D005340 9.4e-90 334.0 228 71.9
Sopen05g007540 Solanum pennellii HOM05D004550 ORTHO05D005340 2.7e-89 332.4 228 71.5
Migut.L01230 Erythranthe guttata HOM05D004550 ORTHO05D005340 7.9e-89 330.9 229 73.8
Peaxi162Scf00364g00223 Petunia axillaris HOM05D004550 ORTHO05D005340 1.8e-88 329.7 228 71.5
Atru.chr11.1702 Acer truncatum HOM05D004550 ORTHO05D005340 8.8e-88 327.4 227 72.2
Duzib268G1083 Durio zibethinus HOM05D004550 ORTHO05D005340 1.1e-87 327.0 227 71.4
CiPaw.05G128700 Carya illinoinensis HOM05D004550 ORTHO05D005340 2.2e-86 322.8 226 71.2
Gohir.D12G165500 Gossypium hirsutum HOM05D004550 ORTHO05D005340 3.7e-86 322.0 227 71.4
Gorai.008G178200 Gossypium raimondii HOM05D004550 ORTHO05D005340 3.7e-86 322.0 227 71.4
GSVIVG01001334001 Vitis vinifera HOM05D004550 ORTHO05D005340 3.7e-86 322.0 226 71.7
Nn3g17356 Nelumbo nucifera HOM05D004550 ORTHO05D005340 2.4e-85 319.3 227 68.7
Ciclev10032704m.g Citrus clementina HOM05D004550 ORTHO05D005340 6.9e-85 317.8 227 73.1
Gohir.A12G162200 Gossypium hirsutum HOM05D004550 ORTHO05D005340 1.5e-84 316.6 227 70.5
Nn4g23307 Nelumbo nucifera HOM05D004550 ORTHO05D005340 2.0e-84 316.2 229 69.4
Duzib251G0963 Durio zibethinus HOM05D004550 ORTHO05D005340 4.5e-84 315.1 228 71.9
FAN17G0531 Fragaria x ananassa HOM05D004550 ORTHO05D005340 5.9e-84 314.7 227 70.9
RcHm_v2.0_Chr4g0438981 Rosa chinensis HOM05D004550 ORTHO05D005340 7.7e-84 314.3 227 71.8
FAN07G0354 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.0e-83 313.9 227 70.9
FvH4_4g30590 Fragaria vesca HOM05D004550 ORTHO05D005340 1.7e-83 313.2 227 70.9
Eucgr.B03186 Eucalyptus grandis HOM05D004550 ORTHO05D005340 5.0e-83 311.6 230 68.7
MSTRG.7770 Avicennia marina HOM05D004550 ORTHO05D005340 1.9e-82 309.7 229 69.4
Thecc.02G338200 Theobroma cacao HOM05D004550 ORTHO05D005340 7.2e-82 307.8 228 70.2
Prupe.1G281100 Prunus persica HOM05D004550 ORTHO05D005340 1.6e-81 306.6 226 69.5
Aqoxy3G03523 Aquilegia oxysepala HOM05D004550 ORTHO05D005340 2.7e-81 305.8 231 66.7
TWI31G0520 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 4.7e-81 305.1 227 69.2
DCAR_030983 Daucus carota HOM05D004550 ORTHO05D005340 1.0e-80 303.9 227 67.8
Actinidia19927 Actinidia chinensis HOM05D004550 ORTHO05D005340 1.4e-80 303.5 202 77.7
Manes.05G107100 Manihot esculenta HOM05D004550 ORTHO05D005340 1.8e-80 303.1 229 67.7
GSVIVG01011473001 Vitis vinifera HOM05D004550 ORTHO05D005340 8.8e-80 300.8 231 66.2
PGR102G3210 Punica granatum HOM05D004550 ORTHO05D005340 2.6e-79 299.3 230 67.4
MBI19_g03106_MAGBIO Magnolia biondii HOM05D004550 ORTHO05D005340 5.7e-79 298.1 229 66.8
ClCG09G021950 Citrullus lanatus HOM05D004550 ORTHO05D005340 7.4e-79 297.7 225 67.6
Potri.010G162600 Populus trichocarpa HOM05D004550 ORTHO05D005340 9.7e-79 297.4 229 68.1
CsaV3_5G025150 Cucumis sativus L. HOM05D004550 ORTHO05D005340 1.7e-78 296.6 226 66.8
TWI79G1514 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 1.7e-78 296.6 227 68.7
FAN12G3802 Fragaria x ananassa HOM05D004550 ORTHO05D005340 4.8e-78 295.0 218 70.2
Lsat_1_v5_gn_8_46800 Lactuca sativa HOM05D004550 ORTHO05D005340 8.2e-78 294.3 226 65.5
FAN22G1576 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.1e-77 293.9 225 67.1
Phvul.002G090800 Phaseolus vulgaris HOM05D004550 ORTHO05D005340 5.3e-77 291.6 232 68.1
HanXRQChr12g0362721 Helianthus annuus HOM05D004550 ORTHO05D005340 9.1e-77 290.8 228 64.0
Sed0017620 Sechium edule HOM05D004550 ORTHO05D005340 9.1e-77 290.8 226 66.4
PSO063G5570 Papaver somniferum HOM05D004550 ORTHO05D005340 1.2e-76 290.4 227 65.2
VMungo1215G2831 Vigna mungo HOM05D004550 ORTHO05D005340 1.2e-76 290.4 232 68.5
COL.COLO4_27949 Corchorus olitorius HOM05D004550 ORTHO05D005340 1.5e-76 290.0 199 73.4
PSO063G6186 Papaver somniferum HOM05D004550 ORTHO05D005340 1.5e-76 290.0 227 65.6
CANSAT64G2188 Cannabis sativa HOM05D004550 ORTHO05D005340 3.5e-76 288.9 233 64.4
ECA233G5814 Erigeron canadensis HOM05D004550 ORTHO05D005340 3.5e-76 288.9 217 68.2
Lalb_Chr17g0340931 Lupinus albus HOM05D004550 ORTHO05D005340 1.0e-75 287.3 232 67.7
Potri.008G092300 Populus trichocarpa HOM05D004550 ORTHO05D005340 1.0e-75 287.3 229 66.8
Glyma.02G112600 Glycine max HOM05D004550 ORTHO05D005340 1.7e-75 286.6 230 67.8
Haze_11945 Corylus avellana HOM05D004550 ORTHO05D005340 1.1e-74 283.9 183 77.0
Glyma.01G054200 Glycine max HOM05D004550 ORTHO05D005340 1.4e-74 283.5 231 67.1
Medtr5g043020 Medicago truncatula HOM05D004550 ORTHO05D005340 4.2e-74 282.0 229 65.5
MELO3C002974.2 Cucumis melo HOM05D004550 ORTHO05D005340 1.2e-73 280.4 256 59.0
Ca_27938_v3 Cicer arietinum L. HOM05D004550 ORTHO05D005340 2.1e-73 279.6 229 67.2
HanXRQChr08g0210541 Helianthus annuus HOM05D004550 ORTHO05D005340 2.7e-73 279.3 227 64.3
HanXRQChr08g0211031 Helianthus annuus HOM05D004550 ORTHO05D005340 2.7e-73 279.3 227 64.3
arahy.Tifrunner.gnm1.ann1.M1L69X Arachis hypogaea HOM05D004550 ORTHO05D005340 8.0e-73 277.7 231 64.9
Sabra08G0069100 Salix brachista HOM05D004550 ORTHO05D005340 8.0e-73 277.7 278 55.4
SGA_v2.0_scaffold36G14423 Striga asiatica HOM05D004550 ORTHO05D005340 1.8e-72 276.6 232 63.8
TAR371G1135 Trochodendron aralioides HOM05D004550 ORTHO05D005340 2.3e-72 276.2 204 69.1
CARHR062270 Cardamine hirsuta HOM05D004550 ORTHO05D005340 3.9e-72 275.4 225 67.6
SGA_v2.0_scaffold16G07747 Striga asiatica HOM05D004550 ORTHO05D005340 3.9e-72 275.4 237 63.7
Cpa.g.sc1.80 Carica papaya HOM05D004550 ORTHO05D005340 8.8e-72 274.2 197 69.5
DCAR_007179 Daucus carota HOM05D004550 ORTHO05D005340 2.6e-71 272.7 228 61.4
Oeu021093.1 Olea europaea HOM05D004550 ORTHO05D005340 3.3e-71 272.3 180 75.0
Sp5g24440 Schrenkiella parvula HOM05D004550 ORTHO05D005340 2.2e-70 269.6 227 66.1
Thhalv10019103m.g Eutrema salsugineum HOM05D004550 ORTHO05D005340 2.8e-70 269.2 228 64.9
Lj2g0016497 Lotus japonicus HOM05D004550 ORTHO05D005340 2.8e-70 269.2 231 63.2
Sc04g0007790 Simmondsia chinensis HOM05D004550 ORTHO05D005340 8.2e-70 267.7 228 61.8
TAR374G1091 Trochodendron aralioides HOM05D004550 ORTHO05D005340 8.2e-70 267.7 177 72.9
Ah.02g129300 Amaranthus hybridus HOM05D004550 ORTHO05D005340 1.8e-69 266.5 249 59.0
TPR.G30749 Trifolium pratense HOM05D004550 ORTHO05D005340 3.1e-69 265.8 224 64.3
Aa31LG4G11470 Aethionema arabicum HOM05D004550 ORTHO05D005340 4.1e-69 265.4 219 66.2
unitig_21.g20859 Utricularia gibba HOM05D004550 ORTHO05D005340 7.0e-69 264.6 233 61.8
EL10Ac6g13282 Beta vulgaris HOM05D004550 ORTHO05D005340 1.2e-68 263.8 261 54.8
Sabra10G0123800 Salix brachista HOM05D001252 ORTHO05D005340 2.0e-68 263.1 315 48.9
AL2G28500 Arabidopsis lyrata HOM05D004550 ORTHO05D005340 3.5e-68 262.3 226 63.3
RcHm_v2.0_Chr2g0166971 Rosa chinensis HOM05D004550 ORTHO05D005340 7.7e-68 261.2 234 59.8
Psat2g127440 Pisum sativum HOM05D004550 ORTHO05D005340 1.0e-67 260.8 229 61.1
BolC2t08705H Brassica oleracea HOM05D004550 ORTHO05D005340 1.3e-67 260.4 232 62.9
arahy.Tifrunner.gnm1.ann1.F9ESEJ Arachis hypogaea HOM05D004550 ORTHO05D005340 1.1e-66 257.3 212 64.2
BcaB05g24446 Brassica carinata HOM05D004550 ORTHO05D005340 1.1e-66 257.3 229 62.9
C02p26330 Brassica napus HOM05D004550 ORTHO05D005340 1.1e-66 257.3 232 62.1
Ah.03g134600 Amaranthus hybridus HOM05D004550 ORTHO05D005340 1.5e-66 256.9 232 59.5
AT1G69390 Arabidopsis thaliana HOM05D004550 ORTHO05D005340 1.9e-66 256.5 226 63.3
Carub.0002s1599 Capsella rubella HOM05D004550 ORTHO05D005340 4.2e-66 255.4 226 63.3
Lalb_Chr04g0255821 Lupinus albus HOM05D004550 ORTHO05D005340 5.5e-66 255.0 231 61.5
Hund05856 Selenicereus undatus HOM05D004550 ORTHO05D005340 1.2e-65 253.8 233 59.7
A07p35690 Brassica napus HOM05D004550 ORTHO05D005340 1.6e-65 253.4 234 60.7
C06p40530 Brassica napus HOM05D004550 ORTHO05D005340 1.6e-65 253.4 229 62.0
BraA07t31157Z Brassica rapa HOM05D004550 ORTHO05D005340 1.6e-65 253.4 234 60.7
BolC6t39378H Brassica oleracea HOM05D004550 ORTHO05D005340 2.7e-65 252.7 230 62.2
FvH4_6g47773 Fragaria vesca HOM05D004550 ORTHO05D005340 2.7e-65 252.7 230 58.7
Prupe.3G261900 Prunus persica HOM05D004550 ORTHO05D005340 6.1e-65 251.5 224 62.5
THA.LOC104822027 Tarenaya hassleriana HOM05D004550 ORTHO05D005340 8.8e-64 247.7 229 60.3
Manes.05G087100 Manihot esculenta HOM05D004550 ORTHO05D005340 1.2e-63 247.3 175 69.7
HanXRQChr17g0545411 Helianthus annuus HOM05D004550 ORTHO05D005340 1.3e-62 243.8 228 57.9
Gohir.D02G127801 Gossypium hirsutum HOM05D004550 ORTHO05D005340 3.7e-62 242.3 227 57.7
Gorai.005G143600 Gossypium raimondii HOM05D004550 ORTHO05D005340 3.7e-62 242.3 227 57.7
BcaB03g15897 Brassica carinata HOM05D004550 ORTHO05D005340 4.8e-62 241.9 229 61.6
FAN05G1708 Fragaria x ananassa HOM05D004550 ORTHO05D005340 4.8e-62 241.9 224 58.9
MD09G1057200 Malus domestica HOM05D004550 ORTHO05D005340 2.4e-61 239.6 213 60.6
A02p15870 Brassica napus HOM05D004550 ORTHO05D005340 3.5e-60 235.7 156 76.3
PSO478G0019 Papaver somniferum HOM05D004550 ORTHO05D005340 2.9e-59 232.6 229 57.2
Os12g0498400 Oryza sativa ssp. japonica HOM05D004550 ORTHO05D005340 8.5e-59 231.1 217 57.1
CDE04G2021 Ceratophyllum demersum HOM05D004550 ORTHO05D005340 4.2e-58 228.8 247 52.2
AUR62005866 Chenopodium quinoa HOM05D004550 ORTHO05D005340 7.2e-58 228.0 231 54.1
FAN14G0263 Fragaria x ananassa HOM05D004550 ORTHO05D005340 7.2e-58 228.0 168 67.3
ATR0730G201 Amborella trichopoda HOM05D004550 ORTHO05D005340 1.8e-56 223.4 180 65.0
HPP92_018458 Vanilla planifolia HOM05D004550 ORTHO05D005340 3.0e-56 222.6 232 53.0
Actinidia33237 Actinidia chinensis HOM05D004550 ORTHO05D005340 1.2e-55 220.7 150 76.7
AUR62032858 Chenopodium quinoa HOM05D004550 ORTHO05D005340 1.5e-55 220.3 231 53.2
BcaC03g15080 Brassica carinata HOM05D004550 ORTHO05D005340 3.4e-55 219.2 154 73.4
MELO3C012132.2 Cucumis melo HOM05D004550 ORTHO05D005340 4.8e-54 215.3 224 54.9
MSTRG.729 Avicennia marina HOM05D004550 ORTHO05D005340 3.1e-53 212.6 134 79.1
CsaV3_5G033110 Cucumis sativus L. HOM05D004550 ORTHO05D005340 3.8e-51 205.7 226 54.0
Sed0010995 Sechium edule HOM05D004550 ORTHO05D005340 5.5e-50 201.8 223 54.7
Sabra04G0067200 Salix brachista HOM05D004550 ORTHO05D005340 8.0e-49 198.0 210 54.8
Potri.004G121000 Populus trichocarpa HOM05D004550 ORTHO05D005340 1.8e-48 196.8 192 58.9
SEGI_17925 Sequoiadendron giganteum HOM05D004550 ORTHO05D005340 1.8e-45 186.8 166 61.4
ClCG05G023910 Citrullus lanatus HOM05D004550 ORTHO05D005340 4.1e-45 185.7 202 55.0
Zm00001eb409620 Zea mays HOM05D004550 ORTHO05D005340 2.0e-44 183.3 129 70.5
Thecc.02G337600 Theobroma cacao HOM05D004550 ORTHO05D005340 7.5e-39 164.9 108 75.9
MD16G1066100 Malus domestica HOM05D004550 ORTHO05D005340 6.4e-38 161.8 99 80.8
Pp3c23_20800 Physcomitrium patens HOM05D004550 ORTHO05D005340 7.8e-36 154.8 149 57.7
Pp3c20_5010 Physcomitrium patens HOM05D004550 ORTHO05D005340 1.9e-34 150.2 153 55.6
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 3.3e-34 149.4 158 52.5
Mapoly0021s0017 Marchantia polymorpha HOM05D004550 ORTHO05D005340 5.6e-34 148.7 116 65.5
SMO141G0150 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 6.8e-32 141.7 99 68.7
Pp3c9_20530 Physcomitrium patens HOM05D004550 ORTHO05D005340 7.5e-31 138.3 176 46.0
SMO356G0701 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 2.2e-30 136.7 123 62.6
arahy.Tifrunner.gnm1.ann1.QAIU0T Arachis hypogaea HOM05D004550 ORTHO05D005340 1.1e-26 124.4 80 78.8
BcaC08g45895 Brassica carinata HOM05D004550 ORTHO05D005340 1.7e-22 110.5 68 82.4
C06p37000 Brassica napus HOM05D004550 ORTHO05D005340 3.0e-19 99.8 95 60.0
BolC6t38810H Brassica oleracea HOM05D004550 ORTHO05D005340 3.0e-19 99.8 95 60.0
Potri.017G088401 Populus trichocarpa HOM05D004550 ORTHO05D005340 9.6e-18 94.7 68 67.6
BcaB03g15467 Brassica carinata HOM05D004550 ORTHO05D005340 1.8e-16 90.5 64 70.3
PRCOL_00005365 Prasinoderma coloniale HOM05D004550 ORTHO05D005340 5.8e-15 85.5 135 34.8
Cre17.g720350 Chlamydomonas reinhardtii HOM05D004550 ORTHO05D005340 8.4e-14 81.6 103 41.7
MCO05G609 Micromonas commoda HOM05D004550 ORTHO05D005340 1.6e-12 77.4 104 40.4
RcHm_v2.0_Chr5g0013451 Rosa chinensis HOM05D004550 ORTHO05D005340 4.4e-07 59.3 66 45.5


User provided reference genes

Program Settings