Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021991 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 3.3e-193 678.3 372 100.0
CSS0022685 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 2.2e-189 665.6 372 97.6
CSS0018215 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 3.8e-109 399.1 387 66.7
Dinv40087 Davidia involucrata HOM05D003676 ORTHO05D004262 3.8e-109 399.1 377 65.8
Dinv33627 Davidia involucrata HOM05D003676 ORTHO05D004262 2.5e-108 396.4 384 63.5
Hma1.2p1_0956F.1_g241320 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 1.7e-104 383.6 417 60.7
Cc07_g10720 Coffea canephora HOM05D003676 ORTHO05D004262 6.6e-101 371.7 384 64.3
Lj2A468T73 Lonicera japonica HOM05D003676 ORTHO05D004262 4.3e-100 369.0 385 60.8
vmacro18414 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 4.3e-100 369.0 394 64.5
QL06p032755 Quercus lobata HOM05D003676 ORTHO05D004262 1.5e-97 360.5 387 60.5
Actinidia17444 Actinidia chinensis HOM05D003676 ORTHO05D004262 4.9e-96 355.5 383 60.1
Rhsim10G0212200 Rhododendron simsii HOM05D003676 ORTHO05D004262 1.1e-95 354.4 390 61.5
CiPaw.07G058500 Carya illinoinensis HOM05D003676 ORTHO05D004262 7.0e-95 351.7 393 62.8
Potri.005G114100 Populus trichocarpa HOM05D003676 ORTHO05D004262 4.6e-94 349.0 389 60.9
Cfa006972 Carpinus fangiana HOM05D003676 ORTHO05D004262 7.3e-92 341.7 380 62.1
Actinidia30997 Actinidia chinensis HOM05D003676 ORTHO05D004262 1.2e-91 340.9 381 59.3
Sabra05G0093400 Salix brachista HOM05D003676 ORTHO05D004262 8.1e-91 338.2 399 56.9
Sopen02g028680 Solanum pennellii HOM05D003676 ORTHO05D004262 1.4e-90 337.4 380 62.1
Hma1.2p1_0258F.1_g104145 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 4.0e-90 335.9 455 52.5
Solyc02g083890.4 Solanum lycopersicum HOM05D003676 ORTHO05D004262 7.5e-89 331.6 380 59.5
Duzib187G0981 Durio zibethinus HOM05D003676 ORTHO05D004262 9.8e-89 331.3 388 59.5
Rhsim08G0033700 Rhododendron simsii HOM05D003676 ORTHO05D004262 2.4e-87 326.6 394 58.9
Nn5g30150 Nelumbo nucifera HOM05D003676 ORTHO05D004262 3.2e-87 326.2 392 58.7
TAR381G0332 Trochodendron aralioides HOM05D003676 ORTHO05D004262 1.6e-86 323.9 378 59.8
Peaxi162Scf00083g00320 Petunia axillaris HOM05D003676 ORTHO05D004262 1.7e-85 320.5 377 57.3
CAN.G1671.14 Capsicum annuum HOM05D003676 ORTHO05D004262 8.6e-85 318.2 394 58.4
Ciclev10025949m.g Citrus clementina HOM05D003676 ORTHO05D004262 1.9e-84 317.0 377 56.0
Nitab4.5_0003382g0020 Nicotiana tabacum HOM05D003676 ORTHO05D004262 4.3e-84 315.8 379 60.4
DCAR_016607 Daucus carota HOM05D003676 ORTHO05D004262 9.5e-84 314.7 378 56.6
Nitab4.5_0005660g0010 Nicotiana tabacum HOM05D003676 ORTHO05D004262 2.1e-83 313.5 377 57.8
MD15G1246000 Malus domestica HOM05D003676 ORTHO05D004262 1.4e-82 310.8 398 55.8
PGSC0003DMG400003640 Solanum tuberosum HOM05D003676 ORTHO05D004262 2.3e-82 310.1 377 56.8
Thecc.01G019000 Theobroma cacao HOM05D003676 ORTHO05D004262 3.1e-82 309.7 385 58.7
MD02G1132500 Malus domestica HOM05D003676 ORTHO05D004262 4.0e-82 309.3 392 55.6
Manes.01G145700 Manihot esculenta HOM05D003676 ORTHO05D004262 7.6e-81 305.1 377 55.7
TAR376G0994 Trochodendron aralioides HOM05D003676 ORTHO05D004262 9.9e-81 304.7 376 55.3
RcHm_v2.0_Chr2g0099451 Rosa chinensis HOM05D003676 ORTHO05D004262 2.2e-80 303.5 393 55.2
MSTRG.2714 Avicennia marina HOM05D003676 ORTHO05D004262 2.9e-80 303.1 404 52.7
Prupe.7G168100 Prunus persica HOM05D003676 ORTHO05D004262 3.8e-80 302.8 406 53.2
arahy.Tifrunner.gnm1.ann1.3LB61T Arachis hypogaea HOM05D003676 ORTHO05D004262 1.9e-79 300.4 380 57.4
TAR628G0168 Trochodendron aralioides HOM05D003676 ORTHO05D004262 3.2e-79 299.7 367 58.0
arahy.Tifrunner.gnm1.ann1.CCI0LY Arachis hypogaea HOM05D003676 ORTHO05D004262 4.1e-79 299.3 382 57.1
CANSAT01G0038 Cannabis sativa HOM05D003676 ORTHO05D004262 9.2e-79 298.1 378 55.3
Eucgr.I02350 Eucalyptus grandis HOM05D003676 ORTHO05D004262 1.6e-78 297.4 388 57.5
Atru.chr3.798 Acer truncatum HOM05D003676 ORTHO05D004262 3.5e-78 296.2 408 53.2
Lj4g0000664 Lotus japonicus HOM05D003676 ORTHO05D004262 3.5e-78 296.2 374 54.3
Cpa.g.sc6.251 Carica papaya HOM05D003676 ORTHO05D004262 1.3e-77 294.3 407 51.8
MBI05_g37447_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 8.6e-77 291.6 375 51.7
Hund16490 Selenicereus undatus HOM05D003676 ORTHO05D004262 1.9e-76 290.4 399 53.1
Actinidia22976 Actinidia chinensis HOM05D003676 ORTHO05D004262 4.3e-76 289.3 304 61.5
Duzib264G0036 Durio zibethinus HOM05D003676 ORTHO05D004262 4.3e-76 289.3 385 55.8
PGR119G1864 Punica granatum HOM05D003676 ORTHO05D004262 4.3e-76 289.3 401 54.6
Oeu063192.2 Olea europaea HOM05D003676 ORTHO05D004262 7.6e-73 278.5 356 53.4
FvH4_1g11840 Fragaria vesca HOM05D003676 ORTHO05D004262 1.3e-72 277.7 403 52.6
FAN26G1220 Fragaria x ananassa HOM05D003676 ORTHO05D004262 3.8e-72 276.2 389 53.0
ClCG10G000750 Citrullus lanatus HOM05D003676 ORTHO05D004262 8.4e-72 275.0 389 52.2
PSO541G5658 Papaver somniferum HOM05D003676 ORTHO05D004262 1.4e-71 274.2 375 53.1
MELO3C013767.2 Cucumis melo HOM05D003676 ORTHO05D004262 2.4e-71 273.5 392 51.8
FAN19G1818 Fragaria x ananassa HOM05D003676 ORTHO05D004262 2.4e-71 273.5 394 53.0
FAN23G0443 Fragaria x ananassa HOM05D003676 ORTHO05D004262 2.4e-71 273.5 383 53.5
Lalb_Chr05g0212401 Lupinus albus HOM05D003676 ORTHO05D004262 9.3e-71 271.6 385 51.4
CsaV3_3G000800 Cucumis sativus L. HOM05D003676 ORTHO05D004262 2.7e-70 270.0 391 51.7
Manes.02G104500 Manihot esculenta HOM05D003676 ORTHO05D004262 4.6e-70 269.2 354 55.1
Nn1g05889 Nelumbo nucifera HOM05D003676 ORTHO05D004262 6.0e-70 268.9 372 52.7
PSO675G7127 Papaver somniferum HOM05D003676 ORTHO05D004262 6.0e-70 268.9 380 51.8
Oeu048461.1 Olea europaea HOM05D003676 ORTHO05D004262 7.8e-70 268.5 345 56.8
Psat4g099080 Pisum sativum HOM05D003676 ORTHO05D004262 1.3e-69 267.7 386 51.6
Oeu012589.1 Olea europaea HOM05D003676 ORTHO05D004262 8.7e-69 265.0 358 54.7
Glyma.01G166300 Glycine max HOM05D003676 ORTHO05D004262 1.1e-68 264.6 377 52.0
TPR.G30058 Trifolium pratense HOM05D003676 ORTHO05D004262 4.8e-67 259.2 381 51.7
Gohir.A11G175400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 8.1e-67 258.5 381 50.1
Medtr8g075950 Medicago truncatula HOM05D003676 ORTHO05D004262 1.4e-66 257.7 382 51.6
Sed0017342 Sechium edule HOM05D003676 ORTHO05D004262 1.2e-65 254.6 402 46.3
Lj4A218T52 Lonicera japonica HOM05D003676 ORTHO05D004262 2.6e-65 253.4 384 48.4
Hund14045 Selenicereus undatus HOM05D003676 ORTHO05D004262 3.4e-65 253.1 392 46.2
Aa31LG1G14730 Aethionema arabicum HOM05D003676 ORTHO05D004262 1.7e-64 250.8 366 47.8
Phvul.003G262100 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 6.4e-64 248.8 379 54.1
VMungo0251G0225 Vigna mungo HOM05D003676 ORTHO05D004262 1.1e-63 248.1 401 49.4
AUR62029464 Chenopodium quinoa HOM05D003676 ORTHO05D004262 4.2e-63 246.1 357 49.0
CARHR281500 Cardamine hirsuta HOM05D003676 ORTHO05D004262 5.4e-63 245.7 372 51.1
Glyma.11G077200 Glycine max HOM05D003676 ORTHO05D004262 3.5e-62 243.0 374 50.8
GSVIVG01018782001 Vitis vinifera HOM05D003676 ORTHO05D004262 6.0e-62 242.3 263 59.7
AT5G66230 Arabidopsis thaliana HOM05D003676 ORTHO05D003783 7.9e-62 241.9 379 50.7
Gohir.D11G182900 Gossypium hirsutum HOM05D003676 ORTHO05D004262 7.9e-62 241.9 381 49.1
SalBow3G1193 Salvia bowleyana HOM05D003676 ORTHO05D004262 2.3e-61 240.4 340 53.2
COL.COLO4_21910 Corchorus olitorius HOM05D003676 ORTHO05D004262 1.5e-60 237.7 391 47.1
Gorai.008G063100 Gossypium raimondii HOM05D003676 ORTHO05D004262 5.6e-60 235.7 375 52.0
Glyma.16G128800 Glycine max HOM05D003676 ORTHO05D004262 1.3e-59 234.6 400 47.5
Gohir.D12G060000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.3e-59 234.6 376 51.9
Gohir.A12G059600 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.1e-59 233.8 380 51.8
MBI05_g30743_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 2.1e-59 233.8 379 43.5
TWI09G1351 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 2.4e-58 230.3 382 46.3
Glyma.02G048700 Glycine max HOM05D003676 ORTHO05D004262 4.0e-58 229.6 393 48.6
FAN28G1902 Fragaria x ananassa HOM05D003676 ORTHO05D004262 6.9e-58 228.8 382 47.6
Gorai.007G194900 Gossypium raimondii HOM05D003676 ORTHO05D004262 6.9e-58 228.8 428 43.9
Potri.007G057800 Populus trichocarpa HOM05D003676 ORTHO05D004262 9.0e-58 228.4 385 50.6
Sc07g0000980 Simmondsia chinensis HOM05D003676 ORTHO05D004262 1.2e-57 228.0 338 52.4
Ca_22374_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 1.5e-57 227.6 382 45.3
Ca_25824_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 4.5e-57 226.1 374 49.7
Carub.0008s2827 Capsella rubella HOM05D003676 ORTHO05D004262 9.9e-57 224.9 379 46.2
Thhalv10004614m.g Eutrema salsugineum HOM05D003676 ORTHO05D004262 9.9e-57 224.9 373 46.4
ECA232G1625 Erigeron canadensis HOM05D003676 ORTHO05D004262 1.7e-56 224.2 379 43.5
Gohir.A02G170700 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.7e-56 224.2 439 43.7
Aqoxy6G02292 Aquilegia oxysepala HOM05D003676 ORTHO05D004262 2.4e-55 220.3 381 45.1
C09p11980 Brassica napus HOM05D003676 ORTHO05D004262 5.5e-55 219.2 380 48.2
A09p10110 Brassica napus HOM05D003676 ORTHO05D004262 9.3e-55 218.4 382 48.7
AUR62003369 Chenopodium quinoa HOM05D003676 ORTHO05D004262 3.5e-54 216.5 371 46.4
Gohir.D03G009400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 4.6e-54 216.1 452 43.6
Gohir.D11G183000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 4.6e-54 216.1 324 49.7
Sc16g0002190 Simmondsia chinensis HOM05D003676 ORTHO05D004262 7.9e-54 215.3 372 43.5
TWI53G0168 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 1.0e-53 214.9 404 46.0
Gorai.007G195000 Gossypium raimondii HOM05D003676 ORTHO05D004262 5.1e-53 212.6 324 49.1
BolC9t54086H Brassica oleracea HOM05D003676 ORTHO05D004262 8.7e-53 211.8 380 46.8
BraA09t36654Z Brassica rapa HOM05D003676 ORTHO05D004262 1.9e-52 210.7 383 46.5
Lsat_1_v5_gn_4_146360 Lactuca sativa HOM05D003676 ORTHO05D004262 3.3e-52 209.9 334 48.8
Haze_03763 Corylus avellana HOM05D003676 ORTHO05D004262 2.8e-51 206.8 192 67.2
TPR.G18183 Trifolium pratense HOM05D003676 ORTHO05D004262 1.1e-50 204.9 374 46.8
Gorai.003G009600 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.4e-50 204.5 457 42.2
SGA_v2.0_scaffold78G25382 Striga asiatica HOM05D003676 ORTHO05D004262 3.1e-50 203.4 379 42.7
Ah.03g148760 Amaranthus hybridus HOM05D003676 ORTHO05D004262 5.3e-50 202.6 347 45.8
THA.LOC104819178 Tarenaya hassleriana HOM05D003676 ORTHO05D004262 5.3e-50 202.6 387 42.1
Sp2g30470 Schrenkiella parvula HOM05D003676 ORTHO05D004262 2.6e-49 200.3 374 45.7
unitig_736.g22721 Utricularia gibba HOM05D003676 ORTHO05D004262 2.6e-49 200.3 358 47.2
Phvul.002G108800 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 5.8e-49 199.1 347 46.4
HanXRQChr09g0256601 Helianthus annuus HOM05D003676 ORTHO05D004262 6.5e-48 195.7 337 43.9
HanXRQChr15g0487251 Helianthus annuus HOM05D003676 ORTHO05D004262 1.9e-47 194.1 335 41.8
HPP92_020902 Vanilla planifolia HOM05D003676 ORTHO05D004262 3.2e-47 193.4 379 44.6
Nn1g05888 Nelumbo nucifera HOM05D003676 ORTHO05D004262 4.6e-46 189.5 379 39.8
Medtr5g022010 Medicago truncatula HOM05D003676 ORTHO05D004262 6.0e-46 189.1 371 42.9
CDE05G2608 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 3.7e-43 179.9 359 42.1
Lsat_1_v5_gn_3_74521 Lactuca sativa HOM05D003676 ORTHO05D004262 2.0e-41 174.1 339 44.0
AL8G45300 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 5.9e-41 172.6 234 53.0
Psat2g154560 Pisum sativum HOM05D003676 ORTHO05D004262 1.3e-40 171.4 367 42.8
AL5G31630 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 1.7e-40 171.0 375 37.1
unitig_899.g14713 Utricularia gibba HOM05D003676 ORTHO05D004262 8.5e-40 168.7 335 40.3
Zm00001eb224920 Zea mays HOM05D003676 ORTHO05D004262 5.5e-39 166.0 399 40.1
ECA246G1385 Erigeron canadensis HOM05D003676 ORTHO05D004262 2.7e-38 163.7 317 42.6
Lalb_Chr09g0321731 Lupinus albus HOM05D003676 ORTHO05D004262 3.6e-38 163.3 369 39.3
SHI32179 Sapria himalayana HOM05D003676 ORTHO05D004262 4.6e-38 162.9 351 38.2
SEGI_09532 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 2.3e-37 160.6 353 38.2
SEGI_21114 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 2.3e-37 160.6 353 38.2
Migut.H01153 Erythranthe guttata HOM05D003676 ORTHO05D004262 1.9e-36 157.5 343 44.9
vmacro23249 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 1.1e-34 151.8 342 43.0
vmacro23473 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 1.1e-34 151.8 342 43.0
Os10g0577400 Oryza sativa ssp. japonica HOM05D003676 ORTHO05D004262 1.4e-34 151.4 393 37.7
CDE05G0776 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 2.4e-34 150.6 273 48.0
Sp5g10990 Schrenkiella parvula HOM05D003676 ORTHO05D004262 5.3e-34 149.4 383 35.5
ATR0149G006 Amborella trichopoda HOM05D003676 ORTHO05D004262 5.0e-32 142.9 394 38.1
DCAR_025998 Daucus carota HOM05D003676 ORTHO05D004262 5.0e-32 142.9 254 44.1
Zm00001eb024930 Zea mays HOM05D003676 ORTHO05D004262 1.1e-31 141.7 378 38.1
Atru.chr1.3640 Acer truncatum HOM05D003676 ORTHO05D004262 1.6e-30 137.9 143 65.0
BcaNung04494 Brassica carinata HOM05D003676 ORTHO05D004262 3.9e-29 133.3 271 42.8
Nitab4.5_0000188g0110 Nicotiana tabacum HOM05D003676 ORTHO05D004262 7.4e-28 129.0 233 47.6
Carub.0005s1760 Capsella rubella HOM05D003676 ORTHO05D004262 1.7e-27 127.9 370 35.1
vmacro22131 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 1.7e-27 127.9 355 38.0
PGSC0003DMG400023891 Solanum tuberosum HOM05D003676 ORTHO05D004262 1.1e-26 125.2 293 38.6
Atru.chr1.3647 Acer truncatum HOM05D003676 ORTHO05D004262 3.1e-26 123.6 350 34.9
AT3G51230 Arabidopsis thaliana HOM05D003676 ORTHO05D004262 2.0e-25 120.9 215 41.4
Nitab4.5_0002337g0030 Nicotiana tabacum HOM05D003676 ORTHO05D004262 1.3e-24 118.2 337 36.2
CARHR160810 Cardamine hirsuta HOM05D003676 ORTHO05D004262 3.2e-23 113.6 221 43.4
A01p23560 Brassica napus HOM05D003676 ORTHO05D004262 4.7e-22 109.8 217 41.5
BraA01t02262Z Brassica rapa HOM05D003676 ORTHO05D004262 4.7e-22 109.8 217 41.5
Solyc02g062170.3 Solanum lycopersicum HOM05D003676 ORTHO05D004262 4.7e-22 109.8 293 36.2
Gorai.010G060700 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.0e-21 108.6 214 45.3
BcaNung00393 Brassica carinata HOM05D003676 ORTHO05D004262 1.8e-21 107.8 248 39.9
Sopen02g013140 Solanum pennellii HOM05D003676 ORTHO05D004262 1.8e-21 107.8 293 35.8
RcHm_v2.0_Chr6g0272671 Rosa chinensis HOM05D003676 ORTHO05D004262 3.9e-21 106.7 135 55.6
BcaC09g50089 Brassica carinata HOM05D003676 ORTHO05D004262 1.5e-20 104.8 226 42.9
C01p29220 Brassica napus HOM05D003676 ORTHO05D004262 1.5e-20 104.8 226 42.9
HanXRQChr16g0531461 Helianthus annuus HOM05D003676 ORTHO05D004262 4.8e-19 99.8 246 36.2
SEGI_24904 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 2.0e-17 94.4 299 30.8
Nn1g06616 Nelumbo nucifera HOM05D003676 ORTHO05D004262 4.7e-14 83.2 131 51.1
Nn8g38913 Nelumbo nucifera HOM05D003676 ORTHO05D004262 1.8e-10 71.2 67 53.7
SMO340G0107 Selaginella moellendorffii HOM05D003676 ORTHO05D004262 1.3e-08 65.1 371 28.6
TAR629G3197 Trochodendron aralioides HOM05D003676 ORTHO05D004262 2.9e-08 63.9 116 44.0
Pp3c2_17070 Physcomitrium patens HOM05D032375 ORTHO05D030105 1.1e-07 62.0 71 46.5
Gohir.D09G239350 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.2e-06 58.5 64 59.4
Gorai.006G262100 Gossypium raimondii HOM05D003676 ORTHO05D004262 2.7e-06 57.4 64 57.8
Zm00001eb167470 Zea mays HOM05D003676 ORTHO05D004262 8.0e-06 55.8 73 41.1


User provided reference genes

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