Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021987 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 5.2e-40 167.2 79 100.0
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 7.8e-20 100.1 80 66.2
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 1.3e-19 99.4 80 65.0
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 1.7e-19 99.0 81 64.2
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 3.9e-19 97.8 80 65.0
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 1.1e-18 96.3 80 63.8
vmacro23481 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 1.1e-18 96.3 80 63.8
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 1.9e-18 95.5 80 62.5
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 2.5e-18 95.1 80 65.0
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 2.5e-18 95.1 80 63.8
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 2.5e-18 95.1 80 63.8
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 2.5e-18 95.1 80 63.8
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 4.3e-18 94.4 80 61.2
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 4.3e-18 94.4 80 63.8
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 4.3e-18 94.4 80 62.5
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 5.6e-18 94.0 80 63.8
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 5.6e-18 94.0 80 62.5
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 1.3e-17 92.8 60 75.0
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 1.6e-17 92.4 80 61.2
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 1.6e-17 92.4 80 61.2
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 1.6e-17 92.4 80 61.2
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 2.8e-17 91.7 80 63.8
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 2.8e-17 91.7 80 61.2
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 2.8e-17 91.7 80 60.0
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 2.8e-17 91.7 80 61.2
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 3.6e-17 91.3 80 61.2
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 3.6e-17 91.3 80 60.0
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 3.6e-17 91.3 80 58.8
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 4.8e-17 90.9 80 60.0
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 4.8e-17 90.9 80 60.0
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 4.8e-17 90.9 80 60.0
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 6.2e-17 90.5 80 58.8
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 8.1e-17 90.1 80 60.0
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 8.1e-17 90.1 80 60.0
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 1.1e-16 89.7 80 60.0
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 1.1e-16 89.7 80 60.0
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 1.1e-16 89.7 80 58.8
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 1.4e-16 89.4 79 57.0
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 1.4e-16 89.4 81 59.3
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 1.8e-16 89.0 80 57.5
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 1.8e-16 89.0 80 61.2
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 1.8e-16 89.0 78 61.5
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 2.4e-16 88.6 80 58.8
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 2.4e-16 88.6 80 57.5
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 3.1e-16 88.2 80 57.5
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 3.1e-16 88.2 80 57.5
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 3.1e-16 88.2 80 57.5
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 3.1e-16 88.2 80 57.5
Sc23g0002730 Simmondsia chinensis HOM05D004297 ORTHO05D005213 3.1e-16 88.2 80 55.0
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 3.1e-16 88.2 80 57.5
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 4.0e-16 87.8 80 60.0
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 4.0e-16 87.8 80 58.8
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 5.3e-16 87.4 82 57.3
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 5.3e-16 87.4 80 56.2
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 6.9e-16 87.0 80 55.0
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 6.9e-16 87.0 80 58.8
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 9.0e-16 86.7 80 58.8
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 9.0e-16 86.7 80 58.8
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 9.0e-16 86.7 80 56.2
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 9.0e-16 86.7 80 58.8
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 1.2e-15 86.3 80 56.2
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 1.2e-15 86.3 80 56.2
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 1.5e-15 85.9 80 55.0
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 1.5e-15 85.9 71 62.0
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 1.5e-15 85.9 80 55.0
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 2.6e-15 85.1 80 56.2
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 3.4e-15 84.7 81 56.8
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 3.4e-15 84.7 81 56.8
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 3.4e-15 84.7 80 57.5
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 3.4e-15 84.7 81 58.0
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 4.5e-15 84.3 78 56.4
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 4.5e-15 84.3 80 58.8
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 5.8e-15 84.0 80 57.5
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 5.8e-15 84.0 80 57.5
COL.COLO4_12743 Corchorus olitorius HOM05D004297 ORTHO05D005213 5.8e-15 84.0 78 60.3
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 5.8e-15 84.0 80 56.2
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 5.8e-15 84.0 80 58.8
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 5.8e-15 84.0 79 58.2
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 1.3e-14 82.8 80 55.0
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 1.3e-14 82.8 80 55.0
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 1.7e-14 82.4 80 56.2
BcaC07g42689 Brassica carinata HOM05D004297 ORTHO05D005213 1.7e-14 82.4 80 56.2
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 1.7e-14 82.4 80 56.2
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 1.7e-14 82.4 80 56.2
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 1.7e-14 82.4 80 56.2
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 1.7e-14 82.4 80 56.2
AT5G28442 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 2.2e-14 82.0 81 53.1
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 2.2e-14 82.0 80 55.0
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 2.2e-14 82.0 83 54.2
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 2.2e-14 82.0 80 55.0
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 2.9e-14 81.6 80 53.8
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 2.9e-14 81.6 80 57.5
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 2.9e-14 81.6 59 71.2
SEGI_01640 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 2.9e-14 81.6 71 56.3
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 4.9e-14 80.9 80 55.0
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 4.9e-14 80.9 80 55.0
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 4.2e-13 77.8 80 56.2
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 9.3e-13 76.6 79 51.9
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 1.2e-12 76.3 80 51.2
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 2.7e-12 75.1 80 52.5
CARHR057240 Cardamine hirsuta HOM05D004297 ORTHO05D005213 1.3e-11 72.8 67 58.2
Ah.05g180350 Amaranthus hybridus HOM05D004297 ORTHO05D005213 1.5e-10 69.3 124 37.1
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 7.4e-10 67.0 84 46.4
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 5.3e-08 60.8 78 48.7
AagrBONN_evm.TU.Sc2ySwM_344.3204 Anthoceros agrestis HOM05D004297 ORTHO05D005213 3.4e-07 58.2 60 46.7
Hma1.2p1_0733F.1_g210090 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 4.5e-07 57.8 53 56.6
CSS0028965 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 7.6e-07 57.0 43 72.1
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 7.6e-07 57.0 58 48.3
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 2.2e-06 55.5 58 46.6
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 3.8e-06 54.7 58 46.6


User provided reference genes

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