Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021968 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D018822 3.0e-85 318.5 167 100.0
CSS0015807 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D018822 6.8e-82 307.4 167 97.0
CSS0019330 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D018822 9.0e-74 280.4 171 88.3
CSS0027714 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D018822 9.9e-65 250.4 164 82.9
CSS0033952 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D018822 9.0e-58 227.3 164 76.8
CSS0045520 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001724 1.5e-57 226.5 158 81.6
CSS0044546 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001724 7.1e-55 217.6 158 79.7
Actinidia06738 Actinidia chinensis HOM05D000108 ORTHO05D001724 2.5e-47 192.6 158 69.6
Dinv36392 Davidia involucrata HOM05D000108 ORTHO05D001724 1.2e-46 190.3 158 67.1
Cfa001680 Carpinus fangiana HOM05D000108 ORTHO05D001724 6.7e-37 157.9 158 58.2
Ciclev10030573m.g Citrus clementina HOM05D000108 ORTHO05D001724 7.4e-36 154.5 158 56.3
CiPaw.01G268600 Carya illinoinensis HOM05D000108 ORTHO05D001724 6.9e-34 147.9 158 56.3
GSVIVG01016220001 Vitis vinifera HOM05D003228 ORTHO05D001724 3.8e-32 142.1 158 55.1
Gohir.D10G210800 Gossypium hirsutum HOM05D000108 ORTHO05D001724 8.5e-32 141.0 153 52.3
Gorai.011G236400 Gossypium raimondii HOM05D000108 ORTHO05D001724 4.2e-31 138.7 153 51.6
QL08p054367 Quercus lobata HOM05D000108 ORTHO05D001724 5.5e-31 138.3 150 54.7
QL08p054496 Quercus lobata HOM05D000108 ORTHO05D001724 5.5e-31 138.3 150 54.7
TWI63G0200 Tripterygium wilfordii HOM05D000108 ORTHO05D001724 9.4e-31 137.5 158 52.5
MD01G1103200 Malus domestica HOM05D000108 ORTHO05D001724 7.9e-30 134.4 156 51.9
MD07G1169900 Malus domestica HOM05D000108 ORTHO05D001724 2.3e-29 132.9 156 53.2
Cpa.g.sc53.131 Carica papaya HOM05D000108 ORTHO05D001724 1.5e-28 130.2 155 52.9
RcHm_v2.0_Chr1g0362591 Rosa chinensis HOM05D000108 ORTHO05D001724 2.0e-28 129.8 157 49.7
HanXRQChr08g0218531 Helianthus annuus HOM05D000108 ORTHO05D001724 1.7e-27 126.7 158 47.5
FAN03G2395 Fragaria x ananassa HOM05D000108 ORTHO05D001724 3.7e-27 125.6 158 48.7
Cc02_g10930 Coffea canephora HOM05D000108 ORTHO05D001724 4.8e-27 125.2 161 46.6
ECA233G5278 Erigeron canadensis HOM05D000108 ORTHO05D001724 6.3e-27 124.8 158 45.6
FvH4_7g18790 Fragaria vesca HOM05D000108 ORTHO05D001724 6.3e-27 124.8 158 48.7
FAN06G1146 Fragaria x ananassa HOM05D000108 ORTHO05D001724 6.3e-27 124.8 158 48.7
FAN06G2234 Fragaria x ananassa HOM05D000108 ORTHO05D001724 6.3e-27 124.8 158 48.7
FAN10G1740 Fragaria x ananassa HOM05D000108 ORTHO05D001724 1.1e-26 124.0 158 47.5
FAN10G3052 Fragaria x ananassa HOM05D000108 ORTHO05D001724 1.1e-26 124.0 158 47.5
Oeu007409.1 Olea europaea HOM05D000108 ORTHO05D001724 1.4e-26 123.6 156 47.4
PSO063G0754 Papaver somniferum HOM05D000108 ORTHO05D001724 5.3e-26 121.7 148 45.3
MBI18_g01552_MAGBIO Magnolia biondii HOM05D000108 ORTHO05D001724 6.9e-26 121.3 136 52.2
FAN01G0155 Fragaria x ananassa HOM05D000108 ORTHO05D001724 1.2e-25 120.6 158 48.1
PSO339G0808 Papaver somniferum HOM05D000108 ORTHO05D001724 1.2e-25 120.6 148 44.6
Prupe.2G208800 Prunus persica HOM05D000108 ORTHO05D001724 1.7e-24 116.7 158 48.1
Potri.010G227000 Populus trichocarpa HOM05D000108 ORTHO05D001724 2.9e-24 115.9 141 49.6
CANSAT56G2924 Cannabis sativa HOM05D000108 ORTHO05D001724 6.5e-24 114.8 165 44.2
ClCG08G007710 Citrullus lanatus HOM05D000108 ORTHO05D001724 8.5e-24 114.4 179 43.0
Solyc11g008350.2 Solanum lycopersicum HOM05D000108 ORTHO05D001724 7.2e-23 111.3 154 43.5
Gohir.A10G202600 Gossypium hirsutum HOM05D000108 ORTHO05D001724 6.1e-22 108.2 192 39.1
TAR636G1445 Trochodendron aralioides HOM05D000108 ORTHO05D001724 6.1e-22 108.2 107 56.1
CAN.G321.63 Capsicum annuum HOM05D000108 ORTHO05D001724 1.4e-21 107.1 195 37.4
MELO3C019823.2 Cucumis melo HOM05D000108 ORTHO05D001724 1.8e-21 106.7 158 44.9
Lj2A20G44 Lonicera japonica HOM05D000108 ORTHO05D001724 5.2e-21 105.1 141 44.0
Peaxi162Scf00145g01216 Petunia axillaris HOM05D000108 ORTHO05D001724 6.7e-21 104.8 199 35.7
Eucgr.J01062 Eucalyptus grandis HOM05D000108 ORTHO05D001724 8.8e-21 104.4 149 43.6
MSTRG.9150 Avicennia marina HOM05D000108 ORTHO05D001724 2.6e-20 102.8 130 46.2
CsaV3_6G036700 Cucumis sativus L. HOM05D000108 ORTHO05D001724 2.6e-20 102.8 157 43.9
Manes.05G201200 Manihot esculenta HOM05D000108 ORTHO05D001724 3.3e-20 102.4 157 45.2
Sopen11g004160 Solanum pennellii HOM05D000108 ORTHO05D001724 3.7e-19 99.0 154 40.9
Aqoxy1G01143 Aquilegia oxysepala HOM05D000108 ORTHO05D001724 1.1e-18 97.4 99 52.5
Sed0027974 Sechium edule HOM05D000108 ORTHO05D001724 1.4e-18 97.1 158 41.1
CARHR164850 Cardamine hirsuta HOM05D000108 ORTHO05D001724 1.0e-16 90.9 153 40.5
ATR1126G033 Amborella trichopoda HOM05D000108 ORTHO05D001724 2.9e-16 89.4 153 39.9
Thhalv10010108m.g Eutrema salsugineum HOM05D000108 ORTHO05D001724 2.9e-16 89.4 153 40.5
Sp5g07550 Schrenkiella parvula HOM05D000108 ORTHO05D001724 6.5e-16 88.2 153 39.9
AT3G54870 Arabidopsis thaliana HOM05D000108 ORTHO05D001724 8.5e-16 87.8 162 37.7
BcaB01g00151 Brassica carinata HOM05D000108 ORTHO05D001724 1.5e-15 87.0 153 39.2
BcaC07g39771 Brassica carinata HOM05D000108 ORTHO05D001724 1.5e-15 87.0 153 39.2
A09p47810 Brassica napus HOM05D000108 ORTHO05D001724 1.5e-15 87.0 153 39.2
BolC8t50615H Brassica oleracea HOM05D000108 ORTHO05D001724 1.5e-15 87.0 153 39.2
BraA09t40238Z Brassica rapa HOM05D000108 ORTHO05D001724 1.5e-15 87.0 153 39.2
Duzib114G0930 Durio zibethinus HOM05D000108 ORTHO05D001724 3.2e-15 85.9 98 51.0
C08p30060 Brassica napus HOM05D000108 ORTHO05D001724 4.2e-15 85.5 153 38.6
Haze_16873 Corylus avellana HOM05D000108 ORTHO05D001724 4.2e-15 85.5 71 64.8
Gohir.A05G411200 Gossypium hirsutum HOM05D000108 ORTHO05D001724 9.4e-15 84.3 156 38.5
COL.COLO4_33386 Corchorus olitorius HOM05D000108 ORTHO05D001724 3.6e-14 82.4 93 51.6
AL5G35980 Arabidopsis lyrata HOM05D000108 ORTHO05D001724 8.0e-14 81.3 162 37.0
Aa31sc43G100 Aethionema arabicum HOM05D000108 ORTHO05D001724 3.0e-13 79.3 155 38.7
Nitab4.5_0001450g0060 Nicotiana tabacum HOM05D000108 ORTHO05D001724 3.0e-13 79.3 147 39.5
Nitab4.5_0001659g0160 Nicotiana tabacum HOM05D000108 ORTHO05D001724 1.2e-12 77.4 147 38.8
Haze_16855 Corylus avellana HOM05D000108 ORTHO05D001724 5.7e-12 75.1 102 45.1
SGA_v2.0_scaffold62G21388 Striga asiatica HOM05D000108 ORTHO05D001724 7.5e-12 74.7 86 50.0
Thecc.10G083400 Theobroma cacao HOM05D000108 ORTHO05D001724 9.7e-12 74.3 85 51.8
DCAR_006416 Daucus carota HOM05D000108 ORTHO05D001724 6.3e-11 71.6 98 43.9
Rhsim03G0115900 Rhododendron simsii HOM05D000108 ORTHO05D001724 2.4e-10 69.7 158 36.7
Sabra10G0175100 Salix brachista HOM05D000108 ORTHO05D001724 5.3e-10 68.6 123 43.1
Gohir.D04G004800 Gossypium hirsutum HOM05D000108 ORTHO05D001724 9.1e-10 67.8 158 33.5
THA.LOC104825220 Tarenaya hassleriana HOM05D000108 ORTHO05D001724 4.5e-09 65.5 129 35.7
Gorai.012G006000 Gossypium raimondii HOM05D000108 ORTHO05D001724 5.9e-09 65.1 158 32.3
Sc06g0001660 Simmondsia chinensis HOM05D000108 ORTHO05D001724 7.7e-09 64.7 207 27.5
Lsat_1_v5_gn_8_20800 Lactuca sativa HOM05D000108 ORTHO05D001724 1.7e-08 63.5 88 46.6
Lj2A20T48 Lonicera japonica HOM05D010180 ORTHO05D018822 2.9e-08 62.8 68 51.5
AUR62014259 Chenopodium quinoa HOM05D000108 ORTHO05D001724 3.8e-08 62.4 93 38.7
AUR62038481 Chenopodium quinoa HOM05D000108 ORTHO05D001724 1.1e-07 60.8 90 38.9
TAR636G0116 Trochodendron aralioides HOM05D000108 ORTHO05D001724 4.7e-06 55.5 59 52.5


User provided reference genes

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