Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021966 Camellia sinensis var. sinensis HOM05D002187 ORTHO05D002243 4.2e-40 167.5 82 100.0
CSS0008141 Camellia sinensis var. sinensis HOM05D002187 ORTHO05D002243 1.1e-19 99.8 74 74.3
CSS0031826 Camellia sinensis var. sinensis HOM05D002187 ORTHO05D002243 1.1e-19 99.8 59 84.7
Lj7A742T21 Lonicera japonica HOM05D002187 ORTHO05D002243 1.1e-19 99.8 59 84.7
Actinidia06442 Actinidia chinensis HOM05D002187 ORTHO05D002243 2.4e-19 98.6 59 83.1
Ah.10g025010 Amaranthus hybridus HOM05D002187 ORTHO05D002243 2.4e-19 98.6 59 83.1
MBI15_g22710_MAGBIO Magnolia biondii HOM05D002187 ORTHO05D002243 3.1e-19 98.2 59 83.1
Sc09g0010820 Simmondsia chinensis HOM05D002187 ORTHO05D002243 3.1e-19 98.2 70 71.4
Dinv06809 Davidia involucrata HOM05D002187 ORTHO05D002243 5.3e-19 97.4 59 81.4
Duzib187G1650 Durio zibethinus HOM05D002187 ORTHO05D002243 5.3e-19 97.4 59 81.4
Oeu019794.2 Olea europaea HOM05D002187 ORTHO05D002243 5.3e-19 97.4 66 74.2
Cfa013000 Carpinus fangiana HOM05D002187 ORTHO05D002243 6.9e-19 97.1 59 81.4
Ciclev10009111m.g Citrus clementina HOM05D002187 ORTHO05D002243 6.9e-19 97.1 59 81.4
COL.COLO4_19002 Corchorus olitorius HOM05D002187 ORTHO05D002243 6.9e-19 97.1 59 81.4
Duzib150G1169 Durio zibethinus HOM05D002187 ORTHO05D002243 6.9e-19 97.1 59 81.4
Lalb_Chr11g0063441 Lupinus albus HOM05D002187 ORTHO05D002243 6.9e-19 97.1 70 70.0
Prupe.1G399300 Prunus persica HOM05D002187 ORTHO05D002243 6.9e-19 97.1 59 79.7
Thecc.09G010800 Theobroma cacao HOM05D002187 ORTHO05D002243 9.0e-19 96.7 59 79.7
Zm00001eb132380 Zea mays HOM05D002187 ORTHO05D002243 9.0e-19 96.7 62 75.8
AL6G21270 Arabidopsis lyrata HOM05D002187 ORTHO05D002243 1.2e-18 96.3 59 79.7
AT5G10730 Arabidopsis thaliana HOM05D002187 ORTHO05D002243 1.2e-18 96.3 59 79.7
CiPaw.07G234000 Carya illinoinensis HOM05D002187 ORTHO05D002243 1.2e-18 96.3 59 79.7
AUR62020302 Chenopodium quinoa HOM05D002187 ORTHO05D002243 1.2e-18 96.3 62 77.4
Glyma.04G058600 Glycine max HOM05D002187 ORTHO05D002243 1.2e-18 96.3 59 79.7
Gohir.A05G062800 Gossypium hirsutum HOM05D002187 ORTHO05D002243 1.2e-18 96.3 59 79.7
Gohir.A05G062866 Gossypium hirsutum HOM05D002187 ORTHO05D002243 1.2e-18 96.3 59 79.7
Oeu014157.2 Olea europaea HOM05D002187 ORTHO05D002243 1.2e-18 96.3 59 81.4
HPP92_027402 Vanilla planifolia HOM05D002187 ORTHO05D002243 1.2e-18 96.3 62 79.0
GSVIVG01036044001 Vitis vinifera HOM05D002187 ORTHO05D002243 1.2e-18 96.3 59 81.4
arahy.Tifrunner.gnm1.ann1.MVX6LJ Arachis hypogaea HOM05D002187 ORTHO05D002243 1.5e-18 95.9 59 79.7
arahy.Tifrunner.gnm1.ann1.Z7V5PV Arachis hypogaea HOM05D002187 ORTHO05D002243 1.5e-18 95.9 59 79.7
Lj1g0003178 Lotus japonicus HOM05D002187 ORTHO05D002243 1.5e-18 95.9 59 79.7
MD08G1049300 Malus domestica HOM05D002187 ORTHO05D002243 1.5e-18 95.9 59 79.7
Nn4g23625 Nelumbo nucifera HOM05D002187 ORTHO05D002243 1.5e-18 95.9 59 79.7
TAR622G0938 Trochodendron aralioides HOM05D002187 ORTHO05D002243 1.5e-18 95.9 59 81.4
MSTRG.25813 Avicennia marina HOM05D002187 ORTHO05D002243 2.0e-18 95.5 66 74.2
BcaC03g13327 Brassica carinata HOM05D002187 ORTHO05D002243 2.0e-18 95.5 59 79.7
BraA02t05045Z Brassica rapa HOM05D002187 ORTHO05D002243 2.0e-18 95.5 59 79.7
CANSAT25G0833 Cannabis sativa HOM05D002187 ORTHO05D002243 2.0e-18 95.5 55 83.6
Carub.0006s0920 Capsella rubella HOM05D002187 ORTHO05D002243 2.0e-18 95.5 59 79.7
Ca_15795_v3 Cicer arietinum L. HOM05D002187 ORTHO05D002243 2.0e-18 95.5 59 78.0
Cc08_g06340 Coffea canephora HOM05D002187 ORTHO05D002243 2.0e-18 95.5 74 64.9
Gohir.D05G065300 Gossypium hirsutum HOM05D002187 ORTHO05D002243 2.0e-18 95.5 59 78.0
Gorai.009G066100 Gossypium raimondii HOM05D002187 ORTHO05D002243 2.0e-18 95.5 59 78.0
Sp6g32730 Schrenkiella parvula HOM05D002187 ORTHO05D002243 2.0e-18 95.5 59 79.7
THA.LOC104814977 Tarenaya hassleriana HOM05D002187 ORTHO05D002243 2.0e-18 95.5 59 79.7
TPR.G6775 Trifolium pratense HOM05D002187 ORTHO05D002243 2.0e-18 95.5 59 78.0
Atru.chr7.2605 Acer truncatum HOM05D002187 ORTHO05D002243 2.6e-18 95.1 59 79.7
CARHR202590 Cardamine hirsuta HOM05D002187 ORTHO05D002243 2.6e-18 95.1 59 78.0
HanXRQChr13g0412511 Helianthus annuus HOM05D002187 ORTHO05D002243 2.6e-18 95.1 59 76.3
MD15G1045600 Malus domestica HOM05D002187 ORTHO05D002243 2.6e-18 95.1 59 79.7
RcHm_v2.0_Chr6g0299041 Rosa chinensis HOM05D002187 ORTHO05D002243 2.6e-18 95.1 59 78.0
VMungo1309G0795 Vigna mungo HOM05D002187 ORTHO05D002243 2.6e-18 95.1 55 83.6
Lsat_1_v5_gn_5_62121 Lactuca sativa HOM05D002187 ORTHO05D002243 3.4e-18 94.7 59 74.6
Nitab4.5_0000989g0040 Nicotiana tabacum HOM05D002187 ORTHO05D002243 3.4e-18 94.7 66 71.2
Prupe.8G025300 Prunus persica HOM05D002187 ORTHO05D002243 3.4e-18 94.7 55 81.8
TAR629G0047 Trochodendron aralioides HOM05D002187 ORTHO05D002243 3.4e-18 94.7 55 81.8
BcaB05g21501 Brassica carinata HOM05D002187 ORTHO05D002243 4.5e-18 94.4 59 78.0
Cpa.g.sc23.48 Carica papaya HOM05D002187 ORTHO05D002243 4.5e-18 94.4 55 80.0
Manes.16G133500 Manihot esculenta HOM05D002187 ORTHO05D002243 4.5e-18 94.4 62 75.8
Potri.006G268000 Populus trichocarpa HOM05D002187 ORTHO05D002243 4.5e-18 94.4 55 83.6
Sabra04G0075900 Salix brachista HOM05D002187 ORTHO05D002243 4.5e-18 94.4 55 83.6
SGA_v2.0_scaffold193G40698 Striga asiatica HOM05D002187 ORTHO05D002243 4.5e-18 94.4 66 72.7
vmacro05593 Vaccinium macrocarpon HOM05D002187 ORTHO05D002243 4.5e-18 94.4 59 76.3
Aqoxy3G03813 Aquilegia oxysepala HOM05D002187 ORTHO05D002243 5.8e-18 94.0 59 78.0
EL10Ac2g02433 Beta vulgaris HOM05D002187 ORTHO05D002243 5.8e-18 94.0 59 79.7
Os02g0556100 Oryza sativa ssp. japonica HOM05D002187 ORTHO05D002243 5.8e-18 94.0 66 69.7
Aa31LG3G16380 Aethionema arabicum HOM05D002187 ORTHO05D002243 7.6e-18 93.6 59 76.3
BcaB08g37313 Brassica carinata HOM05D002187 ORTHO05D002243 1.0e-17 93.2 59 78.0
BcaC04g19289 Brassica carinata HOM05D002187 ORTHO05D002243 1.0e-17 93.2 59 78.0
Dinv34872 Davidia involucrata HOM05D002187 ORTHO05D002243 1.0e-17 93.2 59 78.0
Eucgr.C01875 Eucalyptus grandis HOM05D002187 ORTHO05D002243 1.0e-17 93.2 59 78.0
Thhalv10014285m.g Eutrema salsugineum HOM05D002187 ORTHO05D002243 1.0e-17 93.2 59 78.0
Medtr3g105660 Medicago truncatula HOM05D002187 ORTHO05D002243 1.0e-17 93.2 59 78.0
Rhsim10G0066000 Rhododendron simsii HOM05D002187 ORTHO05D002243 1.0e-17 93.2 59 78.0
THA.LOC104820963 Tarenaya hassleriana HOM05D002187 ORTHO05D002243 1.0e-17 93.2 59 74.6
Migut.A00404 Erythranthe guttata HOM05D002187 ORTHO05D002243 1.3e-17 92.8 66 71.2
Manes.02G064300 Manihot esculenta HOM05D002187 ORTHO05D002243 1.3e-17 92.8 59 72.9
Peaxi162Scf00045g01833 Petunia axillaris HOM05D002187 ORTHO05D002243 1.3e-17 92.8 66 69.7
Potri.004G106300 Populus trichocarpa HOM05D002187 ORTHO05D002243 1.3e-17 92.8 55 81.8
PGR083G2273 Punica granatum HOM05D002187 ORTHO05D002243 1.3e-17 92.8 59 76.3
QL02p017682 Quercus lobata HOM05D002187 ORTHO05D002243 1.3e-17 92.8 59 76.3
CAN.G396.12 Capsicum annuum HOM05D002187 ORTHO05D002243 1.7e-17 92.4 66 71.2
ECA240G0785 Erigeron canadensis HOM05D002187 ORTHO05D002243 1.7e-17 92.4 59 76.3
FAN15G1687 Fragaria x ananassa HOM05D002187 ORTHO05D002243 1.7e-17 92.4 77 58.4
FAN27G0807 Fragaria x ananassa HOM05D002187 ORTHO05D002243 1.7e-17 92.4 77 58.4
Hma1.2p1_0588F.1_g184435 Hydrangea macrophylla HOM05D002187 ORTHO05D002243 1.7e-17 92.4 55 81.8
Lsat_1_v5_gn_6_15660 Lactuca sativa HOM05D002187 ORTHO05D002243 1.7e-17 92.4 55 81.8
Sed0019319 Sechium edule HOM05D002187 ORTHO05D002243 1.7e-17 92.4 59 72.9
Sopen08g002470 Solanum pennellii HOM05D002187 ORTHO05D002243 1.7e-17 92.4 66 68.2
TWI60G0353 Tripterygium wilfordii HOM05D002187 ORTHO05D002243 1.7e-17 92.4 59 76.3
Ciclev10012367m.g Citrus clementina HOM05D002187 ORTHO05D002243 2.2e-17 92.0 59 72.9
FvH4_2g41440 Fragaria vesca HOM05D002187 ORTHO05D002243 2.2e-17 92.0 59 72.9
Phvul.009G085100 Phaseolus vulgaris HOM05D002187 ORTHO05D002243 2.2e-17 92.0 55 80.0
Solyc08g006510.3 Solanum lycopersicum HOM05D002187 ORTHO05D002243 2.2e-17 92.0 62 71.0
Actinidia36295 Actinidia chinensis HOM05D002187 ORTHO05D002243 2.9e-17 91.7 55 78.2
CARHR197400 Cardamine hirsuta HOM05D002187 ORTHO05D002243 2.9e-17 91.7 59 72.9
Potri.018G013400 Populus trichocarpa HOM05D002187 ORTHO05D002243 2.9e-17 91.7 55 80.0
Sabra18G0017300 Salix brachista HOM05D002187 ORTHO05D002243 2.9e-17 91.7 55 81.8
ATR0691G165 Amborella trichopoda HOM05D002187 ORTHO05D002243 4.9e-17 90.9 55 78.2
A02p00620 Brassica napus HOM05D002187 ORTHO05D002243 4.9e-17 90.9 60 78.3
BolC2t06421H Brassica oleracea HOM05D002187 ORTHO05D002243 4.9e-17 90.9 60 78.3
Cfa007987 Carpinus fangiana HOM05D002187 ORTHO05D002243 4.9e-17 90.9 78 59.0
DCAR_032011 Daucus carota HOM05D002187 ORTHO05D002243 4.9e-17 90.9 59 74.6
HanXRQChr05g0135621 Helianthus annuus HOM05D002187 ORTHO05D002243 4.9e-17 90.9 55 78.2
Psat0s4637g0040 Pisum sativum HOM05D002187 ORTHO05D002243 4.9e-17 90.9 59 74.6
C02p04610 Brassica napus HOM05D002187 ORTHO05D002243 6.5e-17 90.5 61 77.0
CDE04G0777 Ceratophyllum demersum HOM05D002187 ORTHO05D002243 6.5e-17 90.5 55 78.2
Atru.chr8.793 Acer truncatum HOM05D002187 ORTHO05D002243 8.4e-17 90.1 59 71.2
COL.COLO4_38266 Corchorus olitorius HOM05D002187 ORTHO05D002243 8.4e-17 90.1 59 71.2
SalBow4G2070 Salvia bowleyana HOM05D002187 ORTHO05D002243 8.4e-17 90.1 66 69.7
ClCG08G013880 Citrullus lanatus HOM05D002187 ORTHO05D002243 1.1e-16 89.7 59 72.9
MELO3C011320.2 Cucumis melo HOM05D002187 ORTHO05D002243 1.1e-16 89.7 59 72.9
CsaV3_2G032660 Cucumis sativus L. HOM05D002187 ORTHO05D002243 1.1e-16 89.7 59 72.9
TWI63G1524 Tripterygium wilfordii HOM05D002187 ORTHO05D002243 1.1e-16 89.7 55 78.2
Aa31LG11G13690 Aethionema arabicum HOM05D002187 ORTHO05D002243 2.5e-16 88.6 55 74.5
PSO478G3368 Papaver somniferum HOM05D002187 ORTHO05D002243 2.5e-16 88.6 66 68.2
CDE02G2218 Ceratophyllum demersum HOM05D002187 ORTHO05D002243 3.2e-16 88.2 55 76.4
ECA233G0933 Erigeron canadensis HOM05D002187 ORTHO05D002243 3.2e-16 88.2 55 76.4
PSO017G1282 Papaver somniferum HOM05D002187 ORTHO05D002243 3.2e-16 88.2 66 68.2
Sed0019494 Sechium edule HOM05D002187 ORTHO05D002243 3.2e-16 88.2 59 67.8
Thhalv10014393m.g Eutrema salsugineum HOM05D002187 ORTHO05D002243 4.2e-16 87.8 55 74.5
unitig_747.g21899 Utricularia gibba HOM05D002187 ORTHO05D002243 4.2e-16 87.8 66 65.2
Carub.0006s1410 Capsella rubella HOM05D002187 ORTHO05D002243 5.5e-16 87.4 59 69.5
CSS0022441 Camellia sinensis var. sinensis HOM05D002187 ORTHO05D002243 7.1e-16 87.0 55 72.7
BcaNung02213 Brassica carinata HOM05D002187 ORTHO05D002243 9.3e-16 86.7 59 67.8
A02p03300 Brassica napus HOM05D002187 ORTHO05D002243 9.3e-16 86.7 59 71.2
AT5G15910 Arabidopsis thaliana HOM05D002187 ORTHO05D002243 1.2e-15 86.3 59 69.5
Sp6g28200 Schrenkiella parvula HOM05D002187 ORTHO05D002243 1.2e-15 86.3 59 69.5
BcaC03g18459 Brassica carinata HOM05D002187 ORTHO05D002243 2.7e-15 85.1 59 69.5
C02p08060 Brassica napus HOM05D002187 ORTHO05D002243 2.7e-15 85.1 59 69.5
BolC2t06728H Brassica oleracea HOM05D002187 ORTHO05D002243 2.7e-15 85.1 59 69.5
BraA02t05300Z Brassica rapa HOM05D002187 ORTHO05D002243 2.7e-15 85.1 59 69.5
Nitab4.5_0000502g0190 Nicotiana tabacum HOM05D002187 ORTHO05D002243 3.5e-15 84.7 51 80.4
AL6G26790 Arabidopsis lyrata HOM05D002187 ORTHO05D002243 4.6e-15 84.3 59 67.8
Thecc.04G145200 Theobroma cacao HOM05D002187 ORTHO05D002243 6.0e-15 84.0 66 62.1
Peaxi162Scf00288g01015 Petunia axillaris HOM05D002187 ORTHO05D002243 1.5e-13 79.3 54 74.1
Haze_14087 Corylus avellana HOM05D002187 ORTHO05D002243 3.3e-13 78.2 60 65.0
Mapoly0114s0058 Marchantia polymorpha HOM05D002187 ORTHO05D002243 3.3e-13 78.2 62 61.3
SMO232G0026 Selaginella moellendorffii HOM05D002187 ORTHO05D002243 5.7e-13 77.4 62 59.7
Pp3c18_5720 Physcomitrium patens HOM05D002187 ORTHO05D002243 1.1e-11 73.2 58 56.9
BraA10t44740Z Brassica rapa HOM05D002187 ORTHO05D002243 2.6e-10 68.6 47 72.3
C09p66060 Brassica napus HOM05D002187 ORTHO05D002243 2.2e-09 65.5 43 74.4
Pp3c8_5120 Physcomitrium patens HOM05D002187 ORTHO05D002243 1.9e-08 62.4 55 50.9
CBR_g6602 Chara braunii HOM05D002187 ORTHO05D002243 2.5e-08 62.0 66 47.0
Glyma.U003033 Glycine max HOM05D002187 ORTHO05D002243 9.3e-08 60.1 57 57.9
CBR_g3776 Chara braunii HOM05D002187 ORTHO05D002243 2.1e-07 58.9 55 45.5
AUR62037697 Chenopodium quinoa HOM05D002187 ORTHO05D002243 6.1e-07 57.4 36 80.6
Glyma.06G059402 Glycine max HOM05D002187 ORTHO05D002243 1.3e-06 56.2 57 56.1
Nitab4.5_0001956g0030 Nicotiana tabacum HOM05D002187 ORTHO05D002243 1.3e-06 56.2 33 78.8
Lalb_Chr08g0244581 Lupinus albus HOM05D002187 ORTHO05D002243 2.3e-06 55.5 32 84.4
MELO3C003439.2 Cucumis melo HOM05D002187 ORTHO05D002243 3.0e-06 55.1 59 45.8
CsaV3_3G048850 Cucumis sativus L. HOM05D002187 ORTHO05D002243 3.9e-06 54.7 59 44.1
Phvul.002G136800 Phaseolus vulgaris HOM05D002187 ORTHO05D002243 3.9e-06 54.7 59 42.4
Sed0014736 Sechium edule HOM05D002187 ORTHO05D002243 3.9e-06 54.7 59 44.1
Glyma.06G059200 Glycine max HOM05D002187 ORTHO05D002243 5.1e-06 54.3 57 56.1
HanXRQChr03g0083261 Helianthus annuus HOM05D002187 ORTHO05D002243 5.1e-06 54.3 59 44.1
Lj2g0006141 Lotus japonicus HOM05D002187 ORTHO05D002243 5.1e-06 54.3 59 42.4
Mapoly0022s0160 Marchantia polymorpha HOM05D002187 ORTHO05D002243 5.1e-06 54.3 58 43.1
Medtr5g029260 Medicago truncatula HOM05D002187 ORTHO05D002243 5.1e-06 54.3 59 42.4
Sopen08g025030 Solanum pennellii HOM05D002187 ORTHO05D002243 5.1e-06 54.3 59 42.4
ECA240G4717 Erigeron canadensis HOM05D002187 ORTHO05D002243 6.7e-06 53.9 59 44.1
MBI04_g44374_MAGBIO Magnolia biondii HOM05D002187 ORTHO05D002243 6.7e-06 53.9 59 44.1
PSO063G3694 Papaver somniferum HOM05D002187 ORTHO05D002243 6.7e-06 53.9 59 44.1
Rhsim11G0021500 Rhododendron simsii HOM05D002187 ORTHO05D002243 6.7e-06 53.9 59 39.0
VMungo1215G1464 Vigna mungo HOM05D002187 ORTHO05D002243 6.7e-06 53.9 59 40.7
CDE02G2745 Ceratophyllum demersum HOM05D002187 ORTHO05D002243 8.7e-06 53.5 59 42.4
MBI04_g32201_MAGBIO Magnolia biondii HOM05D002187 ORTHO05D002243 8.7e-06 53.5 59 44.1
Nitab4.5_0000809g0060 Nicotiana tabacum HOM05D002187 ORTHO05D002243 8.7e-06 53.5 59 42.4
RcHm_v2.0_Chr7g0211771 Rosa chinensis HOM05D002187 ORTHO05D002243 8.7e-06 53.5 59 44.1
TPR.G19442 Trifolium pratense HOM05D002187 ORTHO05D002243 8.7e-06 53.5 59 44.1
unitig_748.g7541 Utricularia gibba HOM05D002187 ORTHO05D002243 8.7e-06 53.5 59 39.0


User provided reference genes

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