Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021953 Camellia sinensis var. sinensis HOM05D003830 ORTHO05D004446 9.5e-104 380.6 249 100.0
CSS0032396 Camellia sinensis var. sinensis HOM05D003830 ORTHO05D004446 4.9e-92 341.7 249 92.8
Actinidia25761 Actinidia chinensis HOM05D003830 ORTHO05D004446 7.3e-72 274.6 250 79.2
Nn3g16538 Nelumbo nucifera HOM05D003830 ORTHO05D004446 5.4e-67 258.5 250 75.6
GSVIVG01010345001 Vitis vinifera HOM05D003830 ORTHO05D004446 7.1e-67 258.1 250 72.4
Cfa009315 Carpinus fangiana HOM05D003830 ORTHO05D008363 7.8e-66 254.6 250 69.6
Prupe.1G233200 Prunus persica HOM05D003830 ORTHO05D004446 2.3e-65 253.1 257 72.8
Dinv14800 Davidia involucrata HOM05D003830 ORTHO05D004446 3.0e-65 252.7 250 72.4
Hma1.2p1_0167F.1_g073780 Hydrangea macrophylla HOM05D003830 ORTHO05D004446 5.1e-65 251.9 249 72.7
Actinidia33257 Actinidia chinensis HOM05D003830 ORTHO05D004446 9.6e-64 247.7 249 75.5
CSS0000134 Camellia sinensis var. sinensis HOM05D003830 ORTHO05D004446 1.6e-63 246.9 250 74.0
TAR629G0808 Trochodendron aralioides HOM05D003830 ORTHO05D004446 6.2e-63 245.0 250 66.0
Cpa.g.c26951.1 Carica papaya HOM05D003830 ORTHO05D004446 8.1e-63 244.6 249 69.9
COL.COLO4_23621 Corchorus olitorius HOM05D003830 ORTHO05D004446 2.4e-62 243.0 249 69.1
VMungo0251G0774 Vigna mungo HOM05D003830 ORTHO05D004446 4.0e-62 242.3 250 65.2
CiPaw.05G115100 Carya illinoinensis HOM05D003830 ORTHO05D004446 5.3e-62 241.9 249 69.1
Duzib251G0504 Durio zibethinus HOM05D003830 ORTHO05D004446 9.0e-62 241.1 249 67.1
TAR374G0580 Trochodendron aralioides HOM05D003830 ORTHO05D004446 9.0e-62 241.1 250 74.0
Thecc.02G274300 Theobroma cacao HOM05D003830 ORTHO05D004446 2.6e-61 239.6 249 68.7
DCAR_024085 Daucus carota HOM05D003830 ORTHO05D004446 5.8e-61 238.4 250 63.6
Phvul.001G259600 Phaseolus vulgaris HOM05D003830 ORTHO05D004446 1.3e-60 237.3 250 59.2
Lalb_Chr08g0230701 Lupinus albus HOM05D003830 ORTHO05D004446 2.9e-60 236.1 249 59.8
Ciclev10030548m.g Citrus clementina HOM05D003830 ORTHO05D004446 6.4e-60 235.0 252 71.4
Nn4g22404 Nelumbo nucifera HOM05D003830 ORTHO05D004446 8.4e-60 234.6 258 66.7
Duzib248G1684 Durio zibethinus HOM05D003830 ORTHO05D004446 2.4e-59 233.0 249 57.4
Atru.chr11.2246 Acer truncatum HOM05D003830 ORTHO05D004446 7.1e-59 231.5 260 66.2
Atru.chr11.2261 Acer truncatum HOM05D003830 ORTHO05D004446 7.1e-59 231.5 260 66.2
Glyma.11G248200 Glycine max HOM05D003830 ORTHO05D004446 9.3e-59 231.1 250 68.0
Nitab4.5_0000240g0070 Nicotiana tabacum HOM05D003830 ORTHO05D004446 2.7e-58 229.6 249 65.1
Nitab4.5_0011772g0020 Nicotiana tabacum HOM05D003830 ORTHO05D004446 3.5e-58 229.2 249 64.7
Phvul.002G176100 Phaseolus vulgaris HOM05D003830 ORTHO05D004446 3.5e-58 229.2 250 66.0
Solyc05g014640.3 Solanum lycopersicum HOM05D003830 ORTHO05D004446 3.5e-58 229.2 249 65.9
PGSC0003DMG400017461 Solanum tuberosum HOM05D003830 ORTHO05D004446 3.5e-58 229.2 249 65.5
Sabra10G0048900 Salix brachista HOM05D003830 ORTHO05D004446 1.8e-57 226.9 250 70.8
Sopen05g009770 Solanum pennellii HOM05D003830 ORTHO05D004446 3.0e-57 226.1 249 65.5
Dinv10992 Davidia involucrata HOM05D003830 ORTHO05D004446 5.1e-57 225.3 250 68.8
Manes.13G015800 Manihot esculenta HOM05D003830 ORTHO05D004446 5.1e-57 225.3 250 69.6
TAR622G0818 Trochodendron aralioides HOM05D003830 ORTHO05D004446 6.7e-57 224.9 250 67.6
Gohir.D02G152400 Gossypium hirsutum HOM05D003830 ORTHO05D004446 1.1e-56 224.2 249 62.7
Gohir.A03G128600 Gossypium hirsutum HOM05D003830 ORTHO05D004446 2.5e-56 223.0 249 65.5
Psat5g094600 Pisum sativum HOM05D003830 ORTHO05D004446 2.5e-56 223.0 250 56.4
Hma1.2p1_1340F.1_g276740 Hydrangea macrophylla HOM05D003830 ORTHO05D004446 3.3e-56 222.6 253 68.8
Actinidia30674 Actinidia chinensis HOM05D003830 ORTHO05D004446 5.6e-56 221.9 220 73.2
Ca_16482_v3 Cicer arietinum L. HOM05D003830 ORTHO05D004446 5.6e-56 221.9 250 60.4
Gorai.005G171400 Gossypium raimondii HOM05D003830 ORTHO05D004446 5.6e-56 221.9 249 65.9
vmacro01085 Vaccinium macrocarpon HOM05D003830 ORTHO05D004446 9.6e-56 221.1 250 66.0
SalBow2G2689 Salvia bowleyana HOM05D003830 ORTHO05D004446 1.6e-55 220.3 249 59.4
EL10Ac6g13438 Beta vulgaris HOM05D003830 ORTHO05D004446 4.8e-55 218.8 252 65.1
Cc11_g16600 Coffea canephora HOM05D003830 ORTHO05D004446 8.1e-55 218.0 248 64.1
PSO063G3359 Papaver somniferum HOM05D003830 ORTHO05D004446 6.9e-54 214.9 247 66.0
TPR.G22439 Trifolium pratense HOM05D003830 ORTHO05D004446 6.9e-54 214.9 251 61.8
Glyma.18G009000 Glycine max HOM05D003830 ORTHO05D004446 1.2e-53 214.2 250 64.8
Aqoxy3G01454 Aquilegia oxysepala HOM05D003830 ORTHO05D004446 1.5e-53 213.8 278 55.0
MSTRG.524 Avicennia marina HOM05D003830 ORTHO05D004446 2.0e-53 213.4 249 65.1
Oeu041685.1 Olea europaea HOM05D003830 ORTHO05D004446 3.4e-53 212.6 247 64.0
MSTRG.7981 Avicennia marina HOM05D003830 ORTHO05D004446 9.9e-53 211.1 248 55.6
Oeu038669.1 Olea europaea HOM05D003830 ORTHO05D004446 9.9e-53 211.1 249 63.9
PSO782G2541 Papaver somniferum HOM05D003830 ORTHO05D004446 9.9e-53 211.1 247 65.6
Migut.K00697 Erythranthe guttata HOM05D003830 ORTHO05D004446 1.3e-52 210.7 249 61.0
Peaxi162Scf00128g00924 Petunia axillaris HOM05D003830 ORTHO05D004446 2.2e-52 209.9 249 64.7
AUR62024159 Chenopodium quinoa HOM05D003830 ORTHO05D004446 1.1e-51 207.6 250 63.6
Duzib268G1283 Durio zibethinus HOM05D003830 ORTHO05D004446 4.2e-51 205.7 249 64.7
Lalb_Chr11g0075691 Lupinus albus HOM05D003830 ORTHO05D004446 5.5e-51 205.3 250 60.8
MD13G1112200 Malus domestica HOM05D003830 ORTHO05D004446 5.5e-51 205.3 275 59.6
QL03p054734 Quercus lobata HOM05D003830 ORTHO05D004446 7.1e-51 204.9 250 66.0
VMungo1383G3029 Vigna mungo HOM05D003830 ORTHO05D004446 1.2e-50 204.1 250 56.0
AUR62005571 Chenopodium quinoa HOM05D003830 ORTHO05D004446 1.6e-50 203.8 250 61.2
MD16G1111800 Malus domestica HOM05D003830 ORTHO05D004446 1.6e-50 203.8 264 65.9
Lj4g0001101 Lotus japonicus HOM05D003830 ORTHO05D004446 2.1e-50 203.4 266 58.3
arahy.Tifrunner.gnm1.ann1.D6D033 Arachis hypogaea HOM05D003830 ORTHO05D004446 4.6e-50 202.2 281 52.0
arahy.Tifrunner.gnm1.ann1.ZS76EK Arachis hypogaea HOM05D003830 ORTHO05D004446 1.8e-49 200.3 281 50.9
Lalb_Chr23g0277961 Lupinus albus HOM05D003830 ORTHO05D004446 3.0e-49 199.5 250 55.6
Glyma.08G102200 Glycine max HOM05D003830 ORTHO05D004446 4.3e-48 195.7 248 63.3
Rhsim12G0030500 Rhododendron simsii HOM05D003830 ORTHO05D004446 5.6e-48 195.3 280 53.2
Rhsim12G0031400 Rhododendron simsii HOM05D003830 ORTHO05D004446 5.6e-48 195.3 280 53.2
TWI75G0226 Tripterygium wilfordii HOM05D003830 ORTHO05D004446 1.3e-47 194.1 251 61.4
DCAR_007014 Daucus carota HOM05D003830 ORTHO05D004446 3.7e-47 192.6 248 53.2
CAN.G692.1 Capsicum annuum HOM05D003830 ORTHO05D004446 1.1e-46 191.0 249 57.4
Lj6C822T9 Lonicera japonica HOM05D003830 ORTHO05D004446 1.1e-46 191.0 251 65.3
MBI08_g41743_MAGBIO Magnolia biondii HOM05D003830 ORTHO05D004446 1.8e-46 190.3 248 52.0
Oeu056685.2 Olea europaea HOM05D003830 ORTHO05D004446 4.0e-46 189.1 249 59.0
TWI36G0084 Tripterygium wilfordii HOM05D003830 ORTHO05D004446 6.9e-46 188.3 251 58.2
ECA233G0646 Erigeron canadensis HOM05D003830 ORTHO05D004446 2.6e-45 186.4 249 63.1
Potri.010G056200 Populus trichocarpa HOM05D003830 ORTHO05D004446 1.7e-44 183.7 250 65.6
THA.LOC104825519 Tarenaya hassleriana HOM05D003830 ORTHO05D004446 2.2e-44 183.3 248 63.7
ClCG08G017300 Citrullus lanatus HOM05D003830 ORTHO05D004446 2.9e-44 183.0 259 56.8
ATR0609G075 Amborella trichopoda HOM05D003830 ORTHO05D004446 1.1e-43 181.0 256 50.4
CARHR027310 Cardamine hirsuta HOM05D003830 ORTHO05D004446 1.1e-43 181.0 250 51.6
Manes.12G014700 Manihot esculenta HOM05D003830 ORTHO05D004446 1.1e-43 181.0 249 64.3
AT1G27850 Arabidopsis thaliana HOM05D003830 ORTHO05D004446 1.4e-43 180.6 250 59.6
Sp1g24060 Schrenkiella parvula HOM05D003830 ORTHO05D004446 1.4e-43 180.6 250 50.4
BcaC05g26779 Brassica carinata HOM05D003830 ORTHO05D004446 2.5e-43 179.9 258 53.1
Hund06065 Selenicereus undatus HOM05D003830 ORTHO05D004446 6.0e-42 175.3 262 53.8
C05p26490 Brassica napus HOM05D003830 ORTHO05D004446 3.0e-41 172.9 252 58.3
BolC5t31369H Brassica oleracea HOM05D003830 ORTHO05D004446 3.0e-41 172.9 252 58.3
CDE07G1392 Ceratophyllum demersum HOM05D003830 ORTHO05D004446 5.1e-41 172.2 243 56.0
Sed0027794 Sechium edule HOM05D003830 ORTHO05D004446 5.1e-41 172.2 260 51.9
AL1G41340 Arabidopsis lyrata HOM05D003830 ORTHO05D004446 4.3e-40 169.1 250 60.0
Sc11g0000660 Simmondsia chinensis HOM05D003830 ORTHO05D004446 1.3e-39 167.5 251 56.2
unitig_699.g19949 Utricularia gibba HOM05D003830 ORTHO05D004446 2.2e-39 166.8 247 48.6
ECA234G2423 Erigeron canadensis HOM05D003830 ORTHO05D004446 4.8e-39 165.6 250 48.0
Potri.008G178600 Populus trichocarpa HOM05D003830 ORTHO05D004446 1.1e-38 164.5 250 57.2
HanXRQChr08g0207491 Helianthus annuus HOM05D003830 ORTHO05D004446 2.4e-38 163.3 253 59.3
Lsat_1_v5_gn_8_150260 Lactuca sativa HOM05D003830 ORTHO05D004446 4.1e-38 162.5 257 53.7
SalBow8G5205 Salvia bowleyana HOM05D003830 ORTHO05D004446 5.3e-38 162.2 243 47.7
TWI18G0501 Tripterygium wilfordii HOM05D003830 ORTHO05D004446 9.0e-38 161.4 251 57.0
Aa31sc109G20 Aethionema arabicum HOM05D003830 ORTHO05D004446 1.2e-37 161.0 248 50.0
Sabra08G0136300 Salix brachista HOM05D003830 ORTHO05D004446 1.2e-37 161.0 249 51.4
Cpa.g.c44110 Carica papaya HOM05D003830 ORTHO05D004446 2.6e-37 159.8 167 74.9
Carub.0001s2631 Capsella rubella HOM05D003830 ORTHO05D004446 4.5e-37 159.1 251 59.4
Thhalv10006616m.g Eutrema salsugineum HOM05D003830 ORTHO05D004446 2.2e-36 156.8 250 50.8
FAN12G3820 Fragaria x ananassa HOM05D003830 ORTHO05D004446 1.1e-35 154.5 270 53.3
CsaV3_2G025330 Cucumis sativus L. HOM05D003830 ORTHO05D004446 3.2e-35 152.9 259 52.5
FAN17G1537 Fragaria x ananassa HOM05D003830 ORTHO05D004446 3.2e-35 152.9 270 53.3
CANSAT01G2001 Cannabis sativa HOM05D003830 ORTHO05D004446 2.7e-34 149.8 290 53.1
RcHm_v2.0_Chr4g0431121 Rosa chinensis HOM05D003830 ORTHO05D004446 2.7e-34 149.8 270 53.0
FvH4_4g24320 Fragaria vesca HOM05D003830 ORTHO05D004446 7.9e-34 148.3 270 53.7
C03p74620 Brassica napus HOM05D003830 ORTHO05D004446 1.0e-33 147.9 249 45.0
HPP92_004598 Vanilla planifolia HOM05D003830 ORTHO05D004446 1.0e-33 147.9 265 50.6
A09p38310 Brassica napus HOM05D003830 ORTHO05D004446 1.4e-33 147.5 251 55.4
HanXRQChr17g0569161 Helianthus annuus HOM05D003830 ORTHO05D004446 1.4e-33 147.5 253 56.5
BraA09t39341Z Brassica rapa HOM05D003830 ORTHO05D004446 5.1e-33 145.6 251 55.0
Lsat_1_v5_gn_4_2860 Lactuca sativa HOM05D003830 ORTHO05D004446 8.8e-33 144.8 250 56.0
A08p26030 Brassica napus HOM05D003830 ORTHO05D004446 1.9e-32 143.7 249 49.4
MELO3C010729.2 Cucumis melo HOM05D003830 ORTHO05D004446 1.9e-32 143.7 256 58.6
BraA08t34553Z Brassica rapa HOM05D003830 ORTHO05D004446 9.7e-32 141.4 250 52.4
Eucgr.H04665 Eucalyptus grandis HOM05D003830 ORTHO05D004446 1.7e-31 140.6 171 55.0
SHI17938 Sapria himalayana HOM05D003830 ORTHO05D004446 2.2e-31 140.2 250 44.8
arahy.Tifrunner.gnm1.ann1.MTFP9U Arachis hypogaea HOM05D003830 ORTHO05D004446 6.9e-30 135.2 175 57.1
FAN22G2024 Fragaria x ananassa HOM05D003830 ORTHO05D004446 9.1e-30 134.8 270 48.5
SGA_v2.0_scaffold391G50642 Striga asiatica HOM05D003830 ORTHO05D004446 7.7e-29 131.7 250 45.6
Os12g0239000 Oryza sativa ssp. japonica HOM05D003830 ORTHO05D004446 1.0e-28 131.3 250 48.4
arahy.Tifrunner.gnm1.ann1.JB8DT0 Arachis hypogaea HOM05D003830 ORTHO05D004446 2.9e-28 129.8 175 57.7
BolC3t19710H Brassica oleracea HOM05D003830 ORTHO05D004446 1.9e-27 127.1 249 51.8
unitig_747.g21131 Utricularia gibba HOM05D003830 ORTHO05D004446 5.5e-27 125.6 247 43.3
CDE04G3030 Ceratophyllum demersum HOM05D003830 ORTHO05D004446 1.2e-26 124.4 217 44.7
Migut.E00239 Erythranthe guttata HOM05D003830 ORTHO05D004446 1.6e-26 124.0 251 48.6
PSO063G5558 Papaver somniferum HOM05D003830 ORTHO05D004446 1.6e-26 124.0 194 46.4
Os12g0239200 Oryza sativa ssp. japonica HOM05D003830 ORTHO05D004446 7.9e-26 121.7 259 47.1
PGR102G1232 Punica granatum HOM05D003830 ORTHO05D004446 1.8e-25 120.6 251 48.2
Zm00001eb133500 Zea mays HOM05D003830 ORTHO05D004446 2.4e-22 110.2 249 43.0
Zm00001eb409890 Zea mays HOM05D003830 ORTHO05D004446 6.5e-20 102.1 156 44.2
Glyma.05G145400 Glycine max HOM05D003830 ORTHO05D004446 2.4e-14 83.6 91 57.1
SEGI_06277 Sequoiadendron giganteum HOM05D003830 ORTHO05D004446 9.1e-14 81.6 291 35.1
SGA_v2.0_scaffold87G27127 Striga asiatica HOM05D003830 ORTHO05D004446 3.8e-12 76.3 248 37.1
unitig_22.g6413 Utricularia gibba HOM05D003830 ORTHO05D004446 1.9e-11 73.9 174 37.4
Cpa.g.c26951.2 Carica papaya HOM05D003830 ORTHO05D004446 7.2e-11 72.0 64 60.9
CDE02G1696 Ceratophyllum demersum HOM05D003830 ORTHO05D004446 1.8e-09 67.4 151 35.8
Cpa.g.sc163.20 Carica papaya HOM05D001930 ORTHO05D001345 1.4e-06 57.8 89 47.2


User provided reference genes

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