Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021951 Camellia sinensis var. sinensis HOM05D003563 ORTHO05D005325 6.6e-84 313.9 151 100.0
Dinv39412 Davidia involucrata HOM05D003563 ORTHO05D005325 3.5e-45 185.3 158 66.5
vmacro21635 Vaccinium macrocarpon HOM05D003563 ORTHO05D005325 6.7e-44 181.0 160 62.5
CSS0002435 Camellia sinensis var. sinensis HOM05D003563 ORTHO05D005325 5.7e-43 177.9 163 63.2
Glyma.19G017200 Glycine max HOM05D003563 ORTHO05D005325 1.6e-42 176.4 160 61.2
Nitab4.5_0009269g0010 Nicotiana tabacum HOM05D003563 ORTHO05D005325 2.1e-42 176.0 163 62.0
arahy.Tifrunner.gnm1.ann1.7JQX15 Arachis hypogaea HOM05D003563 ORTHO05D005325 3.7e-42 175.3 160 61.9
arahy.Tifrunner.gnm1.ann1.UW0ZL7 Arachis hypogaea HOM05D003563 ORTHO05D005325 3.7e-42 175.3 160 61.9
VMungo0464G1044 Vigna mungo HOM05D003563 ORTHO05D005325 4.8e-42 174.9 160 60.0
Rhsim06G0034400 Rhododendron simsii HOM05D003563 ORTHO05D005325 8.2e-42 174.1 160 60.6
COL.COLO4_26329 Corchorus olitorius HOM05D003563 ORTHO05D005325 1.1e-41 173.7 149 64.4
Dinv36074 Davidia involucrata HOM05D003563 ORTHO05D005325 1.1e-41 173.7 160 60.0
Medtr6g009330 Medicago truncatula HOM05D003563 ORTHO05D005325 1.1e-41 173.7 160 60.6
Nitab4.5_0000194g0210 Nicotiana tabacum HOM05D003563 ORTHO05D005325 1.1e-41 173.7 163 62.0
Atru.chr13.492 Acer truncatum HOM05D003563 ORTHO05D005325 1.4e-41 173.3 150 65.3
MD15G1031400 Malus domestica HOM05D003563 ORTHO05D005325 1.4e-41 173.3 160 61.2
Phvul.004G023500 Phaseolus vulgaris HOM05D003563 ORTHO05D005325 1.4e-41 173.3 160 59.4
CANSAT21G1125 Cannabis sativa HOM05D003563 ORTHO05D005325 1.8e-41 172.9 160 61.2
Phvul.009G057500 Phaseolus vulgaris HOM05D003563 ORTHO05D005325 1.8e-41 172.9 160 61.2
Prupe.1G380500 Prunus persica HOM05D003563 ORTHO05D005325 1.8e-41 172.9 160 61.2
Oeu049958.2 Olea europaea HOM05D003563 ORTHO05D005325 2.4e-41 172.6 160 60.6
Peaxi162Scf00333g00512 Petunia axillaris HOM05D003563 ORTHO05D005325 2.4e-41 172.6 156 60.9
MSTRG.1282 Avicennia marina HOM05D003563 ORTHO05D005325 3.1e-41 172.2 160 60.0
Gohir.A01G116000 Gossypium hirsutum HOM05D003563 ORTHO05D005325 3.1e-41 172.2 160 60.0
Gohir.D01G104300 Gossypium hirsutum HOM05D003563 ORTHO05D005325 3.1e-41 172.2 160 60.0
Gorai.002G128400 Gossypium raimondii HOM05D003563 ORTHO05D005325 3.1e-41 172.2 160 60.0
Sed0018414 Sechium edule HOM05D003563 ORTHO05D005325 4.1e-41 171.8 160 61.2
VMungo1309G1719 Vigna mungo HOM05D003563 ORTHO05D005325 4.1e-41 171.8 160 60.6
Sed0015721 Sechium edule HOM05D003563 ORTHO05D005325 5.3e-41 171.4 160 61.2
Lalb_Chr23g0266621 Lupinus albus HOM05D003563 ORTHO05D005325 6.9e-41 171.0 160 59.4
QL02p008438 Quercus lobata HOM05D003563 ORTHO05D005325 6.9e-41 171.0 160 61.2
TWI56G0595 Tripterygium wilfordii HOM05D003563 ORTHO05D005325 6.9e-41 171.0 160 61.2
Eucgr.F01561 Eucalyptus grandis HOM05D003563 ORTHO05D005325 9.0e-41 170.6 160 60.6
RcHm_v2.0_Chr6g0300881 Rosa chinensis HOM05D003563 ORTHO05D005325 9.0e-41 170.6 160 60.6
Solyc12g014380.3 Solanum lycopersicum HOM05D003563 ORTHO05D005325 9.0e-41 170.6 160 61.9
Sopen12g006150 Solanum pennellii HOM05D003563 ORTHO05D005325 9.0e-41 170.6 160 61.9
CiPaw.15G077500 Carya illinoinensis HOM05D003563 ORTHO05D005325 1.2e-40 170.2 159 61.6
Cc10_g02960 Coffea canephora HOM05D003563 ORTHO05D005325 1.2e-40 170.2 163 61.3
MBI16_g36556_MAGBIO Magnolia biondii HOM05D003563 ORTHO05D005325 1.2e-40 170.2 160 60.0
MD08G1034600 Malus domestica HOM05D003563 ORTHO05D005325 1.2e-40 170.2 160 60.0
SalBow7G2312 Salvia bowleyana HOM05D003563 ORTHO05D005325 1.2e-40 170.2 160 60.6
MSTRG.25165 Avicennia marina HOM05D003563 ORTHO05D005325 1.5e-40 169.9 160 60.0
ClCG08G015170 Citrullus lanatus HOM05D003563 ORTHO05D005325 1.5e-40 169.9 160 60.6
Lj1g0022254 Lotus japonicus HOM05D003563 ORTHO05D005325 1.5e-40 169.9 160 60.0
Sc02g0006230 Simmondsia chinensis HOM05D003563 ORTHO05D005325 1.5e-40 169.9 160 58.8
Migut.C00716 Erythranthe guttata HOM05D003563 ORTHO05D005325 2.0e-40 169.5 163 59.5
Psat1g077120 Pisum sativum HOM05D003563 ORTHO05D005325 2.6e-40 169.1 160 59.4
PGR083G2760 Punica granatum HOM05D003563 ORTHO05D005325 2.6e-40 169.1 163 59.5
MELO3C010936.2 Cucumis melo HOM05D003563 ORTHO05D005325 3.4e-40 168.7 160 60.0
FAN15G3737 Fragaria x ananassa HOM05D003563 ORTHO05D005325 3.4e-40 168.7 160 60.0
FAN27G1814 Fragaria x ananassa HOM05D003563 ORTHO05D005325 3.4e-40 168.7 160 60.0
THA.LOC104798643 Tarenaya hassleriana HOM05D003563 ORTHO05D005325 4.5e-40 168.3 160 58.8
Thecc.08G025500 Theobroma cacao HOM05D003563 ORTHO05D005325 4.5e-40 168.3 160 60.0
unitig_37.g12990 Utricularia gibba HOM05D003563 ORTHO05D005325 4.5e-40 168.3 160 59.4
Aa31LG9G12790 Aethionema arabicum HOM05D003563 ORTHO05D005325 5.9e-40 167.9 160 58.8
ATR0057G040 Amborella trichopoda HOM05D003563 ORTHO05D005325 5.9e-40 167.9 160 58.1
Cpa.g.sc36.68 Carica papaya HOM05D003563 ORTHO05D005325 5.9e-40 167.9 159 60.4
Glyma.04G032600 Glycine max HOM05D003563 ORTHO05D005325 5.9e-40 167.9 160 59.4
Sp2g07360 Schrenkiella parvula HOM05D003563 ORTHO05D005325 5.9e-40 167.9 160 58.8
AUR62007425 Chenopodium quinoa HOM05D003563 ORTHO05D005325 7.6e-40 167.5 162 59.9
Haze_07269 Corylus avellana HOM05D003563 ORTHO05D005325 7.6e-40 167.5 160 60.0
CAN.G233.10 Capsicum annuum HOM05D003563 ORTHO05D005325 1.0e-39 167.2 162 62.3
Ciclev10000722m.g Citrus clementina HOM05D003563 ORTHO05D005325 1.0e-39 167.2 163 60.1
Carub.0008s0621 Capsella rubella HOM05D003563 ORTHO05D005325 1.3e-39 166.8 160 58.8
Manes.05G160800 Manihot esculenta HOM05D003563 ORTHO05D005325 1.3e-39 166.8 159 60.4
SGA_v2.0_scaffold54G19524 Striga asiatica HOM05D003563 ORTHO05D005325 1.3e-39 166.8 163 60.1
TPR.G32590 Trifolium pratense HOM05D003563 ORTHO05D005325 1.3e-39 166.8 160 58.8
CARHR181650 Cardamine hirsuta HOM05D003563 ORTHO05D005325 1.7e-39 166.4 158 59.5
AUR62027308 Chenopodium quinoa HOM05D003563 ORTHO05D005325 1.7e-39 166.4 162 59.3
Aqoxy6G01090 Aquilegia oxysepala HOM05D003563 ORTHO05D005325 2.2e-39 166.0 163 59.5
A09p19900 Brassica napus HOM05D003563 ORTHO05D005325 2.2e-39 166.0 159 58.5
GSVIVG01009697001 Vitis vinifera HOM05D003563 ORTHO05D005325 2.2e-39 166.0 160 60.0
BraA09t37600Z Brassica rapa HOM05D003563 ORTHO05D005325 2.9e-39 165.6 159 58.5
CsaV3_2G028640 Cucumis sativus L. HOM05D003563 ORTHO05D005325 2.9e-39 165.6 194 54.6
FvH4_2g39910 Fragaria vesca HOM05D003563 ORTHO05D005325 2.9e-39 165.6 160 59.4
C09p25230 Brassica napus HOM05D003563 ORTHO05D005325 3.8e-39 165.2 159 58.5
Cfa018145 Carpinus fangiana HOM05D003563 ORTHO05D005325 3.8e-39 165.2 160 59.4
Ca_04241_v3 Cicer arietinum L. HOM05D003563 ORTHO05D005325 3.8e-39 165.2 160 58.1
Ah.02g117430 Amaranthus hybridus HOM05D003563 ORTHO05D005325 6.5e-39 164.5 169 57.4
AT5G42740 Arabidopsis thaliana HOM05D003563 ORTHO05D005325 6.5e-39 164.5 160 57.5
ECA232G1124 Erigeron canadensis HOM05D003563 ORTHO05D005325 1.1e-38 163.7 160 58.8
Lj4A41G56 Lonicera japonica HOM05D003563 ORTHO05D005325 1.1e-38 163.7 158 59.5
BcaC04g21978 Brassica carinata HOM05D003563 ORTHO05D005325 1.4e-38 163.3 159 57.9
FAN20G1254 Fragaria x ananassa HOM05D003563 ORTHO05D005325 1.4e-38 163.3 160 58.8
Potri.008G118900 Populus trichocarpa HOM05D003563 ORTHO05D005325 1.4e-38 163.3 162 59.9
BolC9t55419H Brassica oleracea HOM05D003563 ORTHO05D005325 1.9e-38 162.9 159 57.9
Lsat_1_v5_gn_4_119160 Lactuca sativa HOM05D003563 ORTHO05D005325 1.9e-38 162.9 160 58.8
Manes.18G027800 Manihot esculenta HOM05D003563 ORTHO05D005325 2.5e-38 162.5 162 59.9
HPP92_002698 Vanilla planifolia HOM05D003563 ORTHO05D005325 3.2e-38 162.2 163 58.9
HanXRQChr09g0268611 Helianthus annuus HOM05D003563 ORTHO05D005325 5.5e-38 161.4 163 58.9
Nn5g29576 Nelumbo nucifera HOM05D003563 ORTHO05D005325 5.5e-38 161.4 160 57.5
Nn1g05025 Nelumbo nucifera HOM05D003563 ORTHO05D005325 9.3e-38 160.6 160 57.5
SEGI_25229 Sequoiadendron giganteum HOM05D003563 ORTHO05D005325 9.3e-38 160.6 159 57.9
DCAR_020972 Daucus carota HOM05D003563 ORTHO05D005325 1.6e-37 159.8 163 57.7
Hund14325 Selenicereus undatus HOM05D003563 ORTHO05D005325 3.6e-37 158.7 187 51.9
PSO675G8753 Papaver somniferum HOM05D003563 ORTHO05D005325 6.1e-37 157.9 163 56.4
TAR381G1659 Trochodendron aralioides HOM05D003563 ORTHO05D005325 1.0e-36 157.1 160 56.9
Duzib093G1625 Durio zibethinus HOM05D003563 ORTHO05D005325 5.1e-36 154.8 143 60.8
PSO541G4717 Papaver somniferum HOM05D003563 ORTHO05D005325 5.1e-36 154.8 163 57.1
Zm00001eb059230 Zea mays HOM05D003563 ORTHO05D005325 5.7e-35 151.4 159 56.0
Thhalv10003173m.g Eutrema salsugineum HOM05D003563 ORTHO05D005325 9.7e-35 150.6 160 55.0
Os03g0776000 Oryza sativa ssp. japonica HOM05D003563 ORTHO05D005325 1.4e-33 146.7 160 53.8
Os06g0256500 Oryza sativa ssp. japonica HOM05D003563 ORTHO05D005325 1.4e-33 146.7 160 53.8
SHI08159 Sapria himalayana HOM05D003563 ORTHO05D005325 1.4e-33 146.7 159 54.1
MCO02G104 Micromonas commoda HOM05D003563 ORTHO05D005325 6.9e-33 144.4 158 53.2
Sabra08G0090300 Salix brachista HOM05D003563 ORTHO05D005325 9.1e-33 144.1 186 47.3
Mapoly0034s0044 Marchantia polymorpha HOM05D003563 ORTHO05D005325 4.5e-32 141.7 162 52.5
AagrBONN_evm.TU.Sc2ySwM_228.405 Anthoceros agrestis HOM05D003563 ORTHO05D005325 1.3e-31 140.2 157 52.2
Pp3c25_1860 Physcomitrium patens HOM05D003563 ORTHO05D005325 1.4e-30 136.7 159 51.6
AagrBONN_evm.TU.Sc2ySwM_368.1410 Anthoceros agrestis HOM05D003563 ORTHO05D005325 5.5e-30 134.8 157 49.0
EL10Ac5g11903 Beta vulgaris HOM05D003563 ORTHO05D005325 7.2e-30 134.4 152 54.6
Pp3c16_6380 Physcomitrium patens HOM05D003563 ORTHO05D005325 9.4e-30 134.0 157 52.2
AagrBONN_evm.TU.Sc2ySwM_344.3288 Anthoceros agrestis HOM05D003563 ORTHO05D005325 1.2e-29 133.7 159 49.1
CBR_g52178 Chara braunii HOM05D003563 ORTHO05D005325 2.1e-29 132.9 158 51.3
CBR_g3932 Chara braunii HOM05D003563 ORTHO05D005325 2.7e-29 132.5 155 49.7
Cre03.g175400 Chlamydomonas reinhardtii HOM05D003563 ORTHO05D005325 1.8e-28 129.8 158 50.0
SMO119G0154 Selaginella moellendorffii HOM05D003563 ORTHO05D005325 2.3e-28 129.4 157 49.0
Pp3c5_3820 Physcomitrium patens HOM05D003563 ORTHO05D005325 3.9e-28 128.6 159 49.1
CDE05G1619 Ceratophyllum demersum HOM05D003563 ORTHO05D005325 3.7e-26 122.1 154 48.1
Lj7C352G3 Lonicera japonica HOM05D003563 ORTHO05D005325 3.7e-26 122.1 152 50.7
PRCOL_00005031 Prasinoderma coloniale HOM05D003563 ORTHO05D005325 6.9e-25 117.9 175 44.6
BcaB07g31058 Brassica carinata HOM05D003563 ORTHO05D005325 1.2e-24 117.1 129 50.4
Aqoxy508s001 Aquilegia oxysepala HOM05D003563 ORTHO05D005325 3.2e-22 109.0 69 75.4
Glyma.06G032451 Glycine max HOM05D003563 ORTHO05D005325 4.2e-22 108.6 68 76.5
SMO340G0102 Selaginella moellendorffii HOM05D003563 ORTHO05D005325 6.1e-21 104.8 135 44.4
CANSAT25G0144 Cannabis sativa HOM05D003563 ORTHO05D005325 2.6e-19 99.4 69 69.6
PRCOL_00005550 Prasinoderma coloniale HOM05D003563 ORTHO05D005325 5.9e-16 88.2 154 40.3
Cfa022173 Carpinus fangiana HOM05D003563 ORTHO05D005325 1.3e-15 87.0 153 37.9
Haze_26983 Corylus avellana HOM05D003563 ORTHO05D005325 8.5e-15 84.3 155 38.7
Hma1.2p1_0203F.1_g086416 Hydrangea macrophylla HOM05D003563 ORTHO05D025739 7.2e-14 81.3 44 93.2
Actinidia15322 Actinidia chinensis HOM05D003563 ORTHO05D005325 9.4e-14 80.9 44 93.2
CDE11G0237 Ceratophyllum demersum HOM05D003563 ORTHO05D005325 1.4e-12 77.0 44 84.1
GSVIVG01025961001 Vitis vinifera HOM05D003563 ORTHO05D011281 3.7e-10 68.9 51 64.7
Duzib041G0434 Durio zibethinus HOM05D003563 ORTHO05D005325 8.2e-10 67.8 44 79.5
PSO541G3367 Papaver somniferum HOM05D003563 ORTHO05D005325 1.1e-09 67.4 50 64.0
Gorai.009G203000 Gossypium raimondii HOM05D003563 ORTHO05D034044 1.5e-06 57.0 68 51.5
Rhsim08G0102600 Rhododendron simsii HOM05D003563 ORTHO05D339399 1.9e-06 56.6 44 63.6


User provided reference genes

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